ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet65c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (Rd... 31 1.0
2PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (... 28 6.6
3MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 ... 28 6.6
4AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) ... 28 6.6

>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA|
           replicase)
          Length = 1045

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 192 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 73
           S +QV +  +  G W   VW WC    D+GE    LYL+N
Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249



to top

>PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (EC 3.1.3.16)|
          Length = 691

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 125 HQAHTDRHHRPSSSAAH 175
           H +HT+R+H PSSS +H
Sbjct: 79  HSSHTNRYHFPSSSHSH 95



to top

>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor|
           (MAdCAM-1) (hMAdCAM-1)
          Length = 406

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 66  GFSFLNTREVPFLHDPISSYTKPTQIDTTGPHPP 167
           G    + + +P LH P    T P   DTT P PP
Sbjct: 212 GLELSHRQAIPVLHSP----TSPEPPDTTSPEPP 241



to top

>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) (Agglutinin)|
           (UDA)
          Length = 372

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 153 LWCRSVWAWCRS**DHGEMEP 91
           LWC S+W WC      G+ EP
Sbjct: 38  LWCCSIWGWC------GDSEP 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,834,054
Number of Sequences: 219361
Number of extensions: 650995
Number of successful extensions: 1808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top