ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet65a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene 291 3e-76
2emb|Z37115.1|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid tra... 159 3e-36
3emb|X68654.1|HVCW21 H.vulgare Cw-21 mRNA 90 2e-15
4emb|Z66529.1|HVGLTP4X9 H.vulgare Ltp4.2 gene 76 3e-11
5gb|U63993.1|HVU63993 Hordeum vulgare lipid transfer protein (blt... 76 3e-11
6emb|AJ784903.1| Triticum turgidum subsp. durum partial mRNA for ... 66 3e-08
7emb|AJ784901.1| Triticum aestivum mRNA for type 1 non-specific l... 66 3e-08
8gb|AF302788.1|AF302788 Triticum aestivum lipid transfer protein ... 60 2e-06
9emb|AJ852556.1| Triticum aestivum ltp9.2d gene for type 1 non sp... 58 8e-06
10emb|AJ852555.1| Triticum aestivum ltp9.2c gene for type 1 non sp... 58 8e-06
11emb|AL158158.14| Human DNA sequence from clone RP11-427L11 on ch... 42 0.45
12gb|AF548001.1| Homo sapiens thioredoxin (TXN) gene, complete cds 42 0.45
13gb|AF334185.1|AF334185 Triticum aestivum lipid transfer protein ... 42 0.45
14emb|X54541.1|HSTRXE4E5 H.sapiens Trx gene for thioredoxin, exon ... 42 0.45
15emb|X70288.1|HSTHDC H.sapiens gene for thioredoxin, exons 4 and 5 42 0.45
16gb|AC105067.8| Mus musculus chromosome 18, clone RP23-232D3, com... 40 1.8
17gb|AC141628.2| Mus musculus BAC clone RP24-358E15 from chromosom... 40 1.8
18gb|AC144402.2| Atelerix albiventris clone LBNL4-89B6, complete s... 40 1.8
19emb|AL356305.11| Human DNA sequence from clone RP11-109K20 on ch... 40 1.8
20gb|AC130187.4| Atelerix albiventris clone LB4-344F17, complete s... 40 1.8
21gb|AC110774.3| Homo sapiens BAC clone RP11-254A24 from 4, comple... 40 1.8
22gb|AC021183.6| Homo sapiens BAC clone RP11-737D22 from 4, comple... 40 1.8
23gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 40 1.8
24gb|AC148962.4| Atelerix albiventris clone LB4-372K23, complete s... 40 1.8
25gb|AC131741.4| Mus musculus BAC clone RP23-66E21 from 7, complet... 40 1.8
26gb|AC161108.2| Mus musculus chromosome 1, clone RP23-224G12, com... 38 7.0
27gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome... 38 7.0
28gb|AC113039.10| Mus musculus chromosome 1, clone RP23-229P20, co... 38 7.0
29gb|AC117780.5| Mus musculus chromosome 16, clone RP24-540H15, co... 38 7.0
30gb|AC186394.1| Pan troglodytes chromosome 7 clone CH251-302F10, ... 38 7.0
31gb|AC147922.2| Xenopus tropicalis clone CH216-98P3, complete seq... 38 7.0
32gb|AC153594.15| Mus musculus 10 BAC RP23-98N14 (Roswell Park Can... 38 7.0
33gb|AC144530.11| Homo sapiens 3 BAC RP11-237O3 (Roswell Park Canc... 38 7.0
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.0
35gb|AC135501.4| Oryza sativa chromosome 3 BAC OSJNBb0011J16 genom... 38 7.0
36gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, comp... 38 7.0
37emb|BX927092.21| Zebrafish DNA sequence from clone CH211-69I15 i... 38 7.0
38gb|AF094425.1| Sium latifolium ribosomal protein L16 (rpl16) gen... 38 7.0
39gb|AF094355.1| Chaerophyllum khorassanicum ribosomal protein L16... 38 7.0
40gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome... 38 7.0
41gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosom... 38 7.0
42ref|XM_646379.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 38 7.0
43gb|AC006463.4| Homo sapiens BAC clone RP11-395G17 from 7, comple... 38 7.0
44gb|AC072063.5| Homo sapiens BAC clone RP11-697B15 from 7, comple... 38 7.0
45gb|AC092485.6| Homo sapiens BAC clone RP11-272P13 from 7, comple... 38 7.0
46emb|AL596323.10| Human DNA sequence from clone RP11-83O12 on chr... 38 7.0
47emb|AL445489.10| Human DNA sequence from clone RP11-230L22 on ch... 38 7.0
48emb|AL359915.14| Human DNA sequence from clone RP11-418J17 on ch... 38 7.0
49emb|AL359762.24| Human DNA sequence from clone RP11-118B23 on ch... 38 7.0
50gb|AC164610.3| Mus musculus BAC clone RP23-422D16 from chromosom... 38 7.0
51emb|CR937025.1|PT027O15 Pan troglodytes chromosome 11 BAC PTB-02... 38 7.0
52gb|AC011722.6| Homo sapiens chromosome 18, clone RP11-217N19, co... 38 7.0
53gb|AC145456.1| Cicer arietinum strain FLIP84-92C clone gl1-15o9,... 38 7.0
54gb|AC145766.1| Cicer arietinum strain FLIP84-92C clone gl1-4m10,... 38 7.0
55gb|AC114688.3| Homo sapiens chromosome 18, clone RP11-316J22, co... 38 7.0
56gb|AC073174.5| Homo sapiens chromosome 10 clone RP11-319F12, com... 38 7.0
57gb|AC007542.3| Homo sapiens 12p12 BAC RPCI11-320J20 (Roswell Par... 38 7.0
58gb|AC092183.6| Homo sapiens 12p BAC RP11-6K23 (Roswell Park Canc... 38 7.0
59gb|AC010414.8| Homo sapiens chromosome 5 clone CTD-2169P11, comp... 38 7.0
60dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
61dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
62dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
63gb|AF150037.1|AF150037 Dermacentor variabilis 12S small ribosoma... 38 7.0
64gb|AC157095.9| Mus musculus 6 BAC RP24-350P11 (Roswell Park Canc... 38 7.0
65gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C... 38 7.0
66gb|AC009474.4| Homo sapiens BAC clone RP11-179G23 from 2, comple... 38 7.0
67dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
68gb|AC154777.2| Mus musculus BAC clone RP24-459H24 from 14, compl... 38 7.0
69dbj|AP002748.4| Homo sapiens genomic DNA, chromosome 11 clone:CT... 38 7.0
70gb|U95869.1|DVU95869 Dermacentor variabilis 12S ribosomal RNA ge... 38 7.0
71gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 7.0
72emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa... 38 7.0
73gb|AC132589.4| Mus musculus BAC clone RP24-258M24 from 1, comple... 38 7.0
74emb|AL450269.10| Human DNA sequence from clone RP11-131I7 on chr... 38 7.0
75gb|AC159470.17| Mus musculus 10 BAC RP24-462C5 (Roswell Park Can... 38 7.0
76gb|AC167231.12| Mus musculus BAC RP23-416P12 (Roswell Park Canc... 38 7.0
77emb|AL714026.13| Mouse DNA sequence from clone RP23-322I11 on ch... 38 7.0
78dbj|AP001157.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 7.0 
>emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene
          Length = 1862

 Score =  291 bits (147), Expect = 3e-76
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaataacgacgcgagcaggcatagctgagtatatgatacatatatcaaaagtgcacatgg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1698 gaataacgacgcgagcaggcatagctgagtatatgatacatatatcaaaagtgcacatgg 1639

                                                                        
Query: 61   tacaaagtacaacaaactcacgattcctctcaaaggaagtaaatattaattataacatcg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1638 tacaaagtacaacaaactcacgattcctctcaaaggaagtaaatattaattataacatcg 1579

                                       
Query: 121  atacaacagtgtgccggccatgcagag 147
            |||||||||||||||||||||||||||
Sbjct: 1578 atacaacagtgtgccggccatgcagag 1552
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>emb|Z37115.1|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid transfer protein precursor
          Length = 691

 Score =  159 bits (80), Expect = 3e-36
 Identities = 105/113 (92%), Gaps = 4/113 (3%)
 Strand = Plus / Minus

                                                                       
Query: 39  catatatcaaaagtgcacatggtacaaagtacaacaaactcacgattcctctcaaaggaa 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 catatatcaaaagtgcacatggtacaaagtacaacaaactcacgattcctctcaaaggaa 599

                                                                
Query: 99  gtaaatattaatta----taacatcgatacaacagtgtgccggccatgcagag 147
           |||||||| |||||    ||||||||||||||||| |||  ||||||||||||
Sbjct: 598 gtaaatataaattataattaacatcgatacaacagagtgttggccatgcagag 546



 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 2   aataacgacgcgagcaggcatagc 25
           ||||| ||||||||||||||||||
Sbjct: 682 aataatgacgcgagcaggcatagc 659
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>emb|X68654.1|HVCW21 H.vulgare Cw-21 mRNA
          Length = 705

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                       
Query: 15  gcaggcatagctgagtatatgatacatatatcaaaagtgcacatggtacaaagtacaaca 74
           |||||||||||||||| |||||| |||||||||| ||||||||||||||||| ||||| |
Sbjct: 700 gcaggcatagctgagtgtatgattcatatatcaacagtgcacatggtacaaaatacaata 641

                
Query: 75  aactc 79
           |||||
Sbjct: 640 aactc 636
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>emb|Z66529.1|HVGLTP4X9 H.vulgare Ltp4.2 gene
          Length = 1567

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                      
Query: 23   agctgagtatatgatacatatatcaaaagtgcacatggtacaaagtacaacaaactca 80
            |||||||| |||||| |||||||||| |||||||||| |||||||||||| |||||||
Sbjct: 1278 agctgagtgtatgatccatatatcaacagtgcacatgttacaaagtacaataaactca 1221
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>gb|U63993.1|HVU63993 Hordeum vulgare lipid transfer protein (blt4.9) gene, complete cds
          Length = 3238

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                      
Query: 23   agctgagtatatgatacatatatcaaaagtgcacatggtacaaagtacaacaaactca 80
            |||||||| |||||| |||||||||| |||||||||| |||||||||||| |||||||
Sbjct: 2674 agctgagtgtatgatccatatatcaacagtgcacatgttacaaagtacaataaactca 2617
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>emb|AJ784903.1| Triticum turgidum subsp. durum partial mRNA for type 1 non-specific
           lipid transfer protein precursor (ltp9.2 gene)
          Length = 604

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 39  catatatcaaaagtgcacatggtacaaagtacaacaaactc 79
           |||||||||||||| |||||||||||||||||| |||||||
Sbjct: 577 catatatcaaaagtacacatggtacaaagtacagcaaactc 537



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                              
Query: 114 aacatcgatacaacagtgt-gccggccatgcagag 147
           ||||||||||||||||||| |||||||||||||||
Sbjct: 516 aacatcgatacaacagtgtggccggccatgcagag 482
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>emb|AJ784901.1| Triticum aestivum mRNA for type 1 non-specific lipid transfer
           protein precursor (ltp9.2 gene)
          Length = 708

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 39  catatatcaaaagtgcacatggtacaaagtacaacaaactc 79
           |||||||||||||| |||||||||||||||||| |||||||
Sbjct: 680 catatatcaaaagtacacatggtacaaagtacagcaaactc 640



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                              
Query: 114 aacatcgatacaacagtgt-gccggccatgcagag 147
           ||||||||||||||||||| |||||||||||||||
Sbjct: 619 aacatcgatacaacagtgtggccggccatgcagag 585
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>gb|AF302788.1|AF302788 Triticum aestivum lipid transfer protein precursor (LTP1) mRNA,
           complete cds
          Length = 737

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 50  agtgcacatggtacaaagtacaacaaactc 79
           ||||||||||||||||||||||||||||||
Sbjct: 679 agtgcacatggtacaaagtacaacaaactc 650
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>emb|AJ852556.1| Triticum aestivum ltp9.2d gene for type 1 non specific lipid transfer
            protein precursor
          Length = 2087

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 39   catatatcaaaagtgcacatggtacaaagtaca 71
            |||||||||||||| ||||||||||||||||||
Sbjct: 1868 catatatcaaaagtacacatggtacaaagtaca 1836



 Score = 46.1 bits (23), Expect = 0.029
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                               
Query: 114  aacatcgatacaacagtgtg-ccggccatgcagag 147
            |||||||||| ||||||||| ||||||||||||||
Sbjct: 1807 aacatcgatataacagtgtggccggccatgcagag 1773
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>emb|AJ852555.1| Triticum aestivum ltp9.2c gene for type 1 non specific lipid transfer
            protein precursor
          Length = 2122

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 39   catatatcaaaagtgcacatggtacaaagtaca 71
            |||||||||||||| ||||||||||||||||||
Sbjct: 1880 catatatcaaaagtacacatggtacaaagtaca 1848



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                               
Query: 114  aacatcgatacaacagtgt-gccggccatgcagag 147
            ||||||||||||||||||| |||||||||||||||
Sbjct: 1819 aacatcgatacaacagtgtggccggccatgcagag 1785
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>emb|AL158158.14| Human DNA sequence from clone RP11-427L11 on chromosome 9q31.2-32
            Contains the TXN gene for thioredoxin, the gene for a
            novel protein similar to thioredoxin, the 3' end of the
            gene for the likely ortholog of mouse polydom (POLYDOM)
            and two CpG islands, complete sequence
          Length = 194835

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 90   tcaaaggaagtaaatattaat 110
            |||||||||||||||||||||
Sbjct: 9384 tcaaaggaagtaaatattaat 9364
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>gb|AF548001.1| Homo sapiens thioredoxin (TXN) gene, complete cds
          Length = 15100

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    tcaaaggaagtaaatattaat 110
             |||||||||||||||||||||
Sbjct: 12943 tcaaaggaagtaaatattaat 12963
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>gb|AF334185.1|AF334185 Triticum aestivum lipid transfer protein precursor (LTP2) mRNA,
           complete cds
          Length = 730

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 55  acatggtacaaagtacaacaaactc 79
           |||| ||||||||||||||||||||
Sbjct: 680 acatcgtacaaagtacaacaaactc 656
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>emb|X54541.1|HSTRXE4E5 H.sapiens Trx gene for thioredoxin, exon 4 and exon 5
          Length = 1404

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 90  tcaaaggaagtaaatattaat 110
           |||||||||||||||||||||
Sbjct: 60  tcaaaggaagtaaatattaat 80
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>emb|X70288.1|HSTHDC H.sapiens gene for thioredoxin, exons 4 and 5
          Length = 1394

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 90  tcaaaggaagtaaatattaat 110
           |||||||||||||||||||||
Sbjct: 31  tcaaaggaagtaaatattaat 51
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>gb|AC105067.8| Mus musculus chromosome 18, clone RP23-232D3, complete sequence
          Length = 186258

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ggaagtaaatattaattata 114
             ||||||||||||||||||||
Sbjct: 19775 ggaagtaaatattaattata 19794
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>gb|AC141628.2| Mus musculus BAC clone RP24-358E15 from chromosome 18, complete
             sequence
          Length = 170129

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ggaagtaaatattaattata 114
             ||||||||||||||||||||
Sbjct: 23067 ggaagtaaatattaattata 23048
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>gb|AC144402.2| Atelerix albiventris clone LBNL4-89B6, complete sequence
          Length = 161430

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 49    aagtgcacatggtacaaagtacaa 72
             ||||||||||||||||||| ||||
Sbjct: 70159 aagtgcacatggtacaaagcacaa 70182
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>emb|AL356305.11| Human DNA sequence from clone RP11-109K20 on chromosome 13, complete
             sequence
          Length = 132436

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    aaggaagtaaatattaatta 112
             ||||||||||||||||||||
Sbjct: 74392 aaggaagtaaatattaatta 74373
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>gb|AC130187.4| Atelerix albiventris clone LB4-344F17, complete sequence
          Length = 150117

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 49    aagtgcacatggtacaaagtacaa 72
             ||||||||||||||||||| ||||
Sbjct: 66671 aagtgcacatggtacaaagcacaa 66694
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>gb|AC110774.3| Homo sapiens BAC clone RP11-254A24 from 4, complete sequence
          Length = 121016

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    tcctctcaaaggaagtaaat 104
             ||||||||||||||||||||
Sbjct: 18205 tcctctcaaaggaagtaaat 18186
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>gb|AC021183.6| Homo sapiens BAC clone RP11-737D22 from 4, complete sequence
          Length = 118837

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    agtaaatattaattataaca 117
             ||||||||||||||||||||
Sbjct: 82647 agtaaatattaattataaca 82628
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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 49      aagtgcacatggtacaaagtacaa 72
               ||||||||||||||||||| ||||
Sbjct: 1753936 aagtgcacatggtacaaagcacaa 1753959
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>gb|AC148962.4| Atelerix albiventris clone LB4-372K23, complete sequence
          Length = 54256

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 49    aagtgcacatggtacaaagtacaa 72
             ||||||||||||||||||| ||||
Sbjct: 24977 aagtgcacatggtacaaagcacaa 25000
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>gb|AC131741.4| Mus musculus BAC clone RP23-66E21 from 7, complete sequence
          Length = 193738

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    attcctctcaaaggaagtaa 102
             ||||||||||||||||||||
Sbjct: 83149 attcctctcaaaggaagtaa 83130
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>gb|AC161108.2| Mus musculus chromosome 1, clone RP23-224G12, complete sequence
          Length = 207067

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    gatacatatatcaaaagtg 53
             |||||||||||||||||||
Sbjct: 61956 gatacatatatcaaaagtg 61974
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>gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0034J04
             map S1466, complete sequence
          Length = 140012

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    atatgatacatatatcaaa 49
             |||||||||||||||||||
Sbjct: 41182 atatgatacatatatcaaa 41200
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>gb|AC113039.10| Mus musculus chromosome 1, clone RP23-229P20, complete sequence
          Length = 172732

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 35     gatacatatatcaaaagtg 53
              |||||||||||||||||||
Sbjct: 136489 gatacatatatcaaaagtg 136471
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>gb|AC117780.5| Mus musculus chromosome 16, clone RP24-540H15, complete sequence
          Length = 153703

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 83    attcctctcaaaggaagta 101
             |||||||||||||||||||
Sbjct: 22838 attcctctcaaaggaagta 22856
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>gb|AC186394.1| Pan troglodytes chromosome 7 clone CH251-302F10, complete sequence
          Length = 183782

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 98     agtaaatattaattataac 116
              |||||||||||||||||||
Sbjct: 177929 agtaaatattaattataac 177947
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>gb|AC147922.2| Xenopus tropicalis clone CH216-98P3, complete sequence
          Length = 171597

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    atatatcaaaagtgcacat 58
             |||||||||||||||||||
Sbjct: 57603 atatatcaaaagtgcacat 57585
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>gb|AC153594.15| Mus musculus 10 BAC RP23-98N14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208555

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 30     tatatgatacatatatcaaaagt 52
              |||||||||||||||| ||||||
Sbjct: 174158 tatatgatacatatataaaaagt 174180
to top
>gb|AC144530.11| Homo sapiens 3 BAC RP11-237O3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 42344

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 58    tggtacaaagtacaacaaa 76
             |||||||||||||||||||
Sbjct: 29660 tggtacaaagtacaacaaa 29642
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 31       atatgatacatatatcaaa 49
                |||||||||||||||||||
Sbjct: 22771251 atatgatacatatatcaaa 22771269
to top
>gb|AC135501.4| Oryza sativa chromosome 3 BAC OSJNBb0011J16 genomic sequence, complete
              sequence
          Length = 124170

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     atatgatacatatatcaaa 49
              |||||||||||||||||||
Sbjct: 108914 atatgatacatatatcaaa 108932
to top
>gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, complete sequence
          Length = 170094

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    agtaaatattaattataac 116
             |||||||||||||||||||
Sbjct: 55730 agtaaatattaattataac 55712
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>emb|BX927092.21| Zebrafish DNA sequence from clone CH211-69I15 in linkage group 1,
             complete sequence
          Length = 108803

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 42    atatcaaaagtgcacatgg 60
             |||||||||||||||||||
Sbjct: 79048 atatcaaaagtgcacatgg 79030
to top
>gb|AF094425.1| Sium latifolium ribosomal protein L16 (rpl16) gene, intron;
           chloroplast gene for chloroplast product
          Length = 918

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 100 taaatattaattataacat 118
           |||||||||||||||||||
Sbjct: 223 taaatattaattataacat 205
to top
>gb|AF094355.1| Chaerophyllum khorassanicum ribosomal protein L16 (rpl16) gene,
           intron; chloroplast gene for chloroplast product
          Length = 899

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 100 taaatattaattataacat 118
           |||||||||||||||||||
Sbjct: 198 taaatattaattataacat 180
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>gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome 1, complete
            sequence
          Length = 170885

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 55   acatggtacaaagtacaac 73
            |||||||||||||||||||
Sbjct: 7240 acatggtacaaagtacaac 7222
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>gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosome 12, complete sequence
          Length = 199646

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     atatgatacatatatcaaa 49
              |||||||||||||||||||
Sbjct: 106997 atatgatacatatatcaaa 107015
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>ref|XM_646379.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (163.t00010)
            partial mRNA
          Length = 1260

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 91   caaaggaagtaaatattaa 109
            |||||||||||||||||||
Sbjct: 1015 caaaggaagtaaatattaa 997
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>gb|AC006463.4| Homo sapiens BAC clone RP11-395G17 from 7, complete sequence
          Length = 120984

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 98     agtaaatattaattataac 116
              |||||||||||||||||||
Sbjct: 114335 agtaaatattaattataac 114353
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>gb|AC072063.5| Homo sapiens BAC clone RP11-697B15 from 7, complete sequence
          Length = 136286

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 100 taaatattaattataacat 118
           |||||||||||||||||||
Sbjct: 940 taaatattaattataacat 922
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>gb|AC092485.6| Homo sapiens BAC clone RP11-272P13 from 7, complete sequence
          Length = 121142

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 100  taaatattaattataacat 118
            |||||||||||||||||||
Sbjct: 1061 taaatattaattataacat 1079
to top
>emb|AL596323.10| Human DNA sequence from clone RP11-83O12 on chromosome 9p13.3-21
             Contains part of the 5' UTR of a novel gene (FLJ31810),
             complete sequence
          Length = 91495

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    agtaaatattaattataac 116
             |||||||||||||||||||
Sbjct: 61638 agtaaatattaattataac 61620
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>emb|AL445489.10| Human DNA sequence from clone RP11-230L22 on chromosome 9 Contains the 3'
              end of a gene for a novel delta-notch like protein
              (FLJ38464), the 5' end of the gene for a novel protein
              (KIAA1608), a novel gene and two CpG islands, complete
              sequence
          Length = 175869

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 97     aagtaaatattaattataa 115
              |||||||||||||||||||
Sbjct: 118524 aagtaaatattaattataa 118542
to top
>emb|AL359915.14| Human DNA sequence from clone RP11-418J17 on chromosome 1 Contains the 3'
              end of a novel gene, a ribosomal protein L6 (RPL6)
              pseudogene and the 5' end of a novel gene, complete
              sequence
          Length = 159158

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 96     gaagtaaatattaattata 114
              |||||||||||||||||||
Sbjct: 155040 gaagtaaatattaattata 155058
to top
>emb|AL359762.24| Human DNA sequence from clone RP11-118B23 on chromosome 1 Contains the
             3' end of the gene for RNA processing factor 1 (RPF1), the
             GNG5 gene for guanine nucleotide binding protein (G
             protein), gamma 5, the SPATA1 gene for spermatogenesis
             associated 1, the CTBS gene for chitobiase, di-N-acetyl-
             and a CpG island, complete sequence
          Length = 125565

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    agtaaatattaattataac 116
             |||||||||||||||||||
Sbjct: 56104 agtaaatattaattataac 56086
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>gb|AC164610.3| Mus musculus BAC clone RP23-422D16 from chromosome 6, complete sequence
          Length = 200529

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     tatatgatacatatatcaa 48
              |||||||||||||||||||
Sbjct: 196715 tatatgatacatatatcaa 196697
to top
>emb|CR937025.1|PT027O15 Pan troglodytes chromosome 11 BAC PTB-027O15, complete sequence
          Length = 155399

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    tatatgatacatatatcaa 48
             |||||||||||||||||||
Sbjct: 52792 tatatgatacatatatcaa 52774
to top
>gb|AC011722.6| Homo sapiens chromosome 18, clone RP11-217N19, complete sequence
          Length = 27033

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 40   atatatcaaaagtgcacat 58
            |||||||||||||||||||
Sbjct: 2766 atatatcaaaagtgcacat 2784
to top
>gb|AC145456.1| Cicer arietinum strain FLIP84-92C clone gl1-15o9, complete sequence
          Length = 45868

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 59    ggtacaaagtacaacaaac 77
             |||||||||||||||||||
Sbjct: 15347 ggtacaaagtacaacaaac 15329
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>gb|AC145766.1| Cicer arietinum strain FLIP84-92C clone gl1-4m10, complete sequence
          Length = 10565

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 59  ggtacaaagtacaacaaac 77
           |||||||||||||||||||
Sbjct: 413 ggtacaaagtacaacaaac 395
to top
>gb|AC114688.3| Homo sapiens chromosome 18, clone RP11-316J22, complete sequence
          Length = 166525

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 40   atatatcaaaagtgcacat 58
            |||||||||||||||||||
Sbjct: 8634 atatatcaaaagtgcacat 8652
to top
>gb|AC073174.5| Homo sapiens chromosome 10 clone RP11-319F12, complete sequence
          Length = 161551

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 101   aaatattaattataacatc 119
             |||||||||||||||||||
Sbjct: 32868 aaatattaattataacatc 32886
to top
>gb|AC007542.3| Homo sapiens 12p12 BAC RPCI11-320J20 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 162081

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    gcacatggtacaaagtaca 71
             |||||||||||||||||||
Sbjct: 31073 gcacatggtacaaagtaca 31091
to top
>gb|AC092183.6| Homo sapiens 12p BAC RP11-6K23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160015

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    gcacatggtacaaagtaca 71
             |||||||||||||||||||
Sbjct: 12507 gcacatggtacaaagtaca 12489
to top
>gb|AC010414.8| Homo sapiens chromosome 5 clone CTD-2169P11, complete sequence
          Length = 145156

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 93    aaggaagtaaatattaattataa 115
             |||||||||||||||||| ||||
Sbjct: 16991 aaggaagtaaatattaatgataa 16969
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 81      cgattcctctcaaaggaag 99
               |||||||||||||||||||
Sbjct: 8524346 cgattcctctcaaaggaag 8524328
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 31       atatgatacatatatcaaa 49
                |||||||||||||||||||
Sbjct: 22764279 atatgatacatatatcaaa 22764297
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     atatgatacatatatcaaa 49
              |||||||||||||||||||
Sbjct: 476331 atatgatacatatatcaaa 476313
to top
>gb|AF150037.1|AF150037 Dermacentor variabilis 12S small ribosomal RNA gene, partial
           sequence; mitochondrial gene for mitochondrial product
          Length = 337

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 97  aagtaaatattaattataa 115
           |||||||||||||||||||
Sbjct: 24  aagtaaatattaattataa 42
to top
>gb|AC157095.9| Mus musculus 6 BAC RP24-350P11 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 177800

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 30     tatatgatacatatatcaaaagt 52
              |||||||||||||||| ||||||
Sbjct: 167855 tatatgatacatatataaaaagt 167833
to top
>gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C3 genomic sequence, complete
             sequence
          Length = 90132

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    tatatgatacatatatcaa 48
             |||||||||||||||||||
Sbjct: 53459 tatatgatacatatatcaa 53477
to top
>gb|AC009474.4| Homo sapiens BAC clone RP11-179G23 from 2, complete sequence
          Length = 168651

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 26  tgagtatatgatacatatatcaa 48
           ||||||||| |||||||||||||
Sbjct: 506 tgagtatataatacatatatcaa 528
to top
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0017C12
          Length = 135356

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    atatgatacatatatcaaa 49
             |||||||||||||||||||
Sbjct: 72572 atatgatacatatatcaaa 72554
to top
>gb|AC154777.2| Mus musculus BAC clone RP24-459H24 from 14, complete sequence
          Length = 155730

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 95    ggaagtaaatattaattataaca 117
             ||||||||||| |||||||||||
Sbjct: 48303 ggaagtaaataataattataaca 48281
to top
>dbj|AP002748.4| Homo sapiens genomic DNA, chromosome 11 clone:CTD-3074O7, complete
              sequence
          Length = 176017

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     gtgcacatggtacaaagta 69
              |||||||||||||||||||
Sbjct: 163107 gtgcacatggtacaaagta 163089
to top
>gb|U95869.1|DVU95869 Dermacentor variabilis 12S ribosomal RNA gene, mitochondrial gene
           for mitochondrial RNA, partial sequence
          Length = 397

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 97  aagtaaatattaattataa 115
           |||||||||||||||||||
Sbjct: 44  aagtaaatattaattataa 62
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 81      cgattcctctcaaaggaag 99
               |||||||||||||||||||
Sbjct: 8524229 cgattcctctcaaaggaag 8524211
to top
>emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa0030N06 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 146444

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     cgattcctctcaaaggaag 99
              |||||||||||||||||||
Sbjct: 131009 cgattcctctcaaaggaag 130991
to top
>gb|AC132589.4| Mus musculus BAC clone RP24-258M24 from 1, complete sequence
          Length = 168097

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 55     acatggtacaaagtacaac 73
              |||||||||||||||||||
Sbjct: 144799 acatggtacaaagtacaac 144781
to top
>emb|AL450269.10| Human DNA sequence from clone RP11-131I7 on chromosome 10, complete
             sequence
          Length = 49480

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 101   aaatattaattataacatc 119
             |||||||||||||||||||
Sbjct: 43433 aaatattaattataacatc 43415
to top
>gb|AC159470.17| Mus musculus 10 BAC RP24-462C5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 175513

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 104   tattaattataacatcgat 122
             |||||||||||||||||||
Sbjct: 93430 tattaattataacatcgat 93412
to top
>gb|AC167231.12| Mus musculus  BAC RP23-416P12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205781

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    tattaattataacatcgat 122
              |||||||||||||||||||
Sbjct: 179071 tattaattataacatcgat 179053
to top
>emb|AL714026.13| Mouse DNA sequence from clone RP23-322I11 on chromosome 2, complete
             sequence
          Length = 134955

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 88    tctcaaaggaagtaaatattaat 110
             |||||||| ||||||||||||||
Sbjct: 44832 tctcaaagaaagtaaatattaat 44810
to top
>dbj|AP001157.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-658F2, complete
            sequence
          Length = 200458

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 51   gtgcacatggtacaaagta 69
            |||||||||||||||||||
Sbjct: 9115 gtgcacatggtacaaagta 9097


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,528,266
Number of Sequences: 3902068
Number of extensions: 1528266
Number of successful extensions: 123112
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122663
Number of HSP's gapped (non-prelim): 445
length of query: 147
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 126
effective length of database: 17,151,101,840
effective search space: 2161038831840
effective search space used: 2161038831840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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