ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet65a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CUTI_PHYCP (P41754) Putative cutinase (EC 3.1.1.74) (Cutin hydro... 29 2.7
2PTPRK_HUMAN (Q15262) Receptor-type tyrosine-protein phosphatase ... 28 5.9
3PTPRK_MOUSE (P35822) Receptor-type tyrosine-protein phosphatase ... 28 5.9
4HST1_YEAST (P53685) NAD-dependent deacetylase HST1 (EC 3.5.1.-) ... 28 7.8

>CUTI_PHYCP (P41754) Putative cutinase (EC 3.1.1.74) (Cutin hydrolase)|
          Length = 210

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 185 MIPMYASSLSKIYGEVSSVDQFVTSLCFYLFPRFLCVYSSCKMLGSLCG-RIKPYYKTYP 9
           M  M++  +S +     S  Q   S C  L P F+ +YS+  +L +L    + PY  T P
Sbjct: 108 MHDMFSPCISGVANSQHSSSQSPRSHCRSLVPSFIAIYSASVVLCALISCFLDPYETTLP 167

Query: 8   L 6
           L
Sbjct: 168 L 168



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>PTPRK_HUMAN (Q15262) Receptor-type tyrosine-protein phosphatase kappa precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa)
           (R-PTP-kappa)
          Length = 1439

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 71  STHTKIWEIGKNINSLQTGQRKILHHRSYSASLHTSE 181
           + H K+W   +N   +   Q K ++HR ++AS    E
Sbjct: 223 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 259



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>PTPRK_MOUSE (P35822) Receptor-type tyrosine-protein phosphatase kappa precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa)
           (R-PTP-kappa)
          Length = 1457

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 71  STHTKIWEIGKNINSLQTGQRKILHHRSYSASLHTSE 181
           + H K+W   +N   +   Q K ++HR ++AS    E
Sbjct: 222 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 258



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>HST1_YEAST (P53685) NAD-dependent deacetylase HST1 (EC 3.5.1.-) (Homologous to|
           SIR2 protein 1)
          Length = 503

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 227 CHWDTSHRRREDLNMIPMYASSLSK 153
           CHWD  H++ +DL  I    + + K
Sbjct: 465 CHWDIPHKKWQDLKKIDYNCTEIDK 489


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,716,381
Number of Sequences: 219361
Number of extensions: 819687
Number of successful extensions: 1739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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