ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet64h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR932358.4| Zebrafish DNA sequence from clone DKEY-105J12 in... 44 0.30
2gb|AC158156.10| Mus musculus chromosome 3, clone RP23-145F12, co... 42 1.2
3gb|AC120398.10| Mus musculus chromosome 3, clone RP24-333H9, com... 42 1.2
4gb|AC127550.3| Mus musculus BAC clone RP24-535F16 from chromosom... 42 1.2
5gb|AC141435.28| Medicago truncatula clone mth2-21i11, complete s... 42 1.2
6dbj|AK080016.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 1.2
7gb|AC074088.5| Homo sapiens BAC clone RP11-122B24 from 4, comple... 42 1.2
8gb|AC002983.1| Arabidopsis thaliana BAC T3F12 from chromosome IV... 40 4.8
9ref|XM_748860.1| Aspergillus fumigatus Af293 C6 transcription fa... 40 4.8
10gb|AC105075.6| Mus musculus chromosome 1, clone RP23-366P11, com... 40 4.8
11emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 40 4.8
12emb|AL161512.2|ATCHRIV24 Arabidopsis thaliana DNA chromosome 4, ... 40 4.8
13gb|AC007288.13| Arabidopsis thaliana chromosome 2 clone F10C8 ma... 40 4.8
14gb|AC006585.8| Arabidopsis thaliana chromosome 2 clone F27C12 ma... 40 4.8
15gb|AC006217.4| Arabidopsis thaliana chromosome 2 clone T13E11 ma... 40 4.8
16gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 4.8
17emb|BX005323.10| Zebrafish DNA sequence from clone DKEY-11F12 in... 40 4.8
18dbj|AP000389.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 4.8
19dbj|AB024037.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.8
20gb|AC006227.1|AC006227 Homo sapiens, clone hRPK.16_A_1, complete... 40 4.8
21emb|BX005310.6| Zebrafish DNA sequence from clone CH211-214J2 in... 40 4.8
22gb|AF058825.1|AF058825 Arabidopsis thaliana BAC F7N22 40 4.8

>emb|CR932358.4| Zebrafish DNA sequence from clone DKEY-105J12 in linkage group 12,
             complete sequence
          Length = 138570

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 1     cactaaaaataatttacagtttgatt 26
             ||||||||||| ||||||||||||||
Sbjct: 65066 cactaaaaatagtttacagtttgatt 65091



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>gb|AC158156.10| Mus musculus chromosome 3, clone RP23-145F12, complete sequence
          Length = 201984

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 4      taaaaataatttacagtttga 24
              |||||||||||||||||||||
Sbjct: 127517 taaaaataatttacagtttga 127537



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>gb|AC120398.10| Mus musculus chromosome 3, clone RP24-333H9, complete sequence
          Length = 153725

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 3      ctaaaaataatttacagtttg 23
              |||||||||||||||||||||
Sbjct: 109131 ctaaaaataatttacagtttg 109151



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>gb|AC127550.3| Mus musculus BAC clone RP24-535F16 from chromosome 3, complete sequence
          Length = 187545

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      taaaaataatttacagtttga 24
              |||||||||||||||||||||
Sbjct: 151558 taaaaataatttacagtttga 151538



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>gb|AC141435.28| Medicago truncatula clone mth2-21i11, complete sequence
          Length = 132497

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 87    tttttgtcaagttttcgtgcc 107
             |||||||||||||||||||||
Sbjct: 24498 tttttgtcaagttttcgtgcc 24478



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>dbj|AK080016.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530047H08
            product:unclassifiable, full insert sequence
          Length = 1627

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 3    ctaaaaataatttacagtttg 23
            |||||||||||||||||||||
Sbjct: 1423 ctaaaaataatttacagtttg 1443



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>gb|AC074088.5| Homo sapiens BAC clone RP11-122B24 from 4, complete sequence
          Length = 69463

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     aaaaataatttacagtttgat 25
             |||||||||||||||||||||
Sbjct: 62375 aaaaataatttacagtttgat 62395



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>gb|AC002983.1| Arabidopsis thaliana BAC T3F12 from chromosome IV near 24 cM, complete
             sequence
          Length = 107183

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   cgacaacaacaactctgcgc 191
             ||||||||||||||||||||
Sbjct: 31892 cgacaacaacaactctgcgc 31873



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>ref|XM_748860.1| Aspergillus fumigatus Af293 C6 transcription factor (Afu5g06800)
            partial mRNA
          Length = 1821

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 284  gcctgccgctgcaccgagga 303
            ||||||||||||||||||||
Sbjct: 1637 gcctgccgctgcaccgagga 1618



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>gb|AC105075.6| Mus musculus chromosome 1, clone RP23-366P11, complete sequence
          Length = 195511

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 6     aaaataatttacagtttgattcat 29
             ||||||||||| ||||||||||||
Sbjct: 79005 aaaataatttagagtttgattcat 78982



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>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tttgattcatctttcactcc 39
              ||||||||||||||||||||
Sbjct: 885819 tttgattcatctttcactcc 885838



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>emb|AL161512.2|ATCHRIV24 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 24
          Length = 199362

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    cgacaacaacaactctgcgc 191
              ||||||||||||||||||||
Sbjct: 115288 cgacaacaacaactctgcgc 115307



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>gb|AC007288.13| Arabidopsis thaliana chromosome 2 clone F10C8 map PR1, complete
             sequence
          Length = 58690

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   cgacaacaacaactctgcgc 191
             ||||||||||||||||||||
Sbjct: 17837 cgacaacaacaactctgcgc 17818



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>gb|AC006585.8| Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete
             sequence
          Length = 103495

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   cgacaacaacaactctgcgc 191
             ||||||||||||||||||||
Sbjct: 72264 cgacaacaacaactctgcgc 72283



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>gb|AC006217.4| Arabidopsis thaliana chromosome 2 clone T13E11 map mi310, complete
             sequence
          Length = 95959

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   cgacaacaacaactctgcgc 191
             ||||||||||||||||||||
Sbjct: 56746 cgacaacaacaactctgcgc 56727



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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    ttcgtccccattatttgccg 171
              ||||||||||||||||||||
Sbjct: 297857 ttcgtccccattatttgccg 297838



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>emb|BX005323.10| Zebrafish DNA sequence from clone DKEY-11F12 in linkage group 7, complete
              sequence
          Length = 219799

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     atttacagtttgattcatct 31
              ||||||||||||||||||||
Sbjct: 205970 atttacagtttgattcatct 205989



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>dbj|AP000389.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MSJ3
          Length = 55739

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   cgacaacaacaactctgcgc 191
             ||||||||||||||||||||
Sbjct: 55098 cgacaacaacaactctgcgc 55117



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>dbj|AB024037.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSK10
          Length = 81414

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   cgacaacaacaactctgcgc 191
             ||||||||||||||||||||
Sbjct: 28948 cgacaacaacaactctgcgc 28967



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>gb|AC006227.1|AC006227 Homo sapiens, clone hRPK.16_A_1, complete sequence
          Length = 153337

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    atctctactagtacctcaca 140
              ||||||||||||||||||||
Sbjct: 143422 atctctactagtacctcaca 143403



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>emb|BX005310.6| Zebrafish DNA sequence from clone CH211-214J2 in linkage group 7,
              complete sequence
          Length = 221979

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     atttacagtttgattcatct 31
              ||||||||||||||||||||
Sbjct: 140956 atttacagtttgattcatct 140975



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>gb|AF058825.1|AF058825 Arabidopsis thaliana BAC F7N22
          Length = 110157

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   cgacaacaacaactctgcgc 191
             ||||||||||||||||||||
Sbjct: 91760 cgacaacaacaactctgcgc 91741


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,137,519
Number of Sequences: 3902068
Number of extensions: 3137519
Number of successful extensions: 49460
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49419
Number of HSP's gapped (non-prelim): 41
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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