ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet64f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191551.1| Oryza sativa (japonica cultivar-group), predic... 238 1e-59
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 238 1e-59
3dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic D... 238 1e-59
4dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic D... 238 1e-59
5dbj|AK106043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 238 1e-59
6dbj|AK065358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 238 1e-59
7dbj|AK059056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 238 1e-59
8ref|XM_474966.1| Oryza sativa (japonica cultivar-group), predic... 68 2e-08
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
10emb|AL731592.2|OSJN00242 Oryza sativa genomic DNA, chromosome 4,... 68 2e-08
11gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
13dbj|AK067523.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
16dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
17dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
18gb|AF042275.1|AF042275 Oryza sativa anther-specific protein gene... 50 0.006
19ref|XM_483156.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.022
20ref|XM_476171.1| Oryza sativa (japonica cultivar-group), predic... 48 0.022
21gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.022
22gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.022
23dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.022
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.022
25dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.022
26emb|AJ575668.1|OSA575668 Oryza sativa (japonica cultivar-group) ... 48 0.022
27emb|AJ575667.1|OSA575667 Oryza sativa (japonica cultivar-group) ... 48 0.022
28dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.022
29dbj|AK120942.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.022
30ref|NM_187695.1| Oryza sativa (japonica cultivar-group), predic... 46 0.089
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.089
32gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.089
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.089
34dbj|AK109504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.089
35dbj|AK105985.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.089
36dbj|AK062585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.089
37gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.35
38gb|AC009108.10| Homo sapiens chromosome 16 clone RP11-463O9, com... 44 0.35
39emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.35
40gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 44 0.35
41gb|AY111975.1| Zea mays CL56086_1 mRNA sequence 44 0.35
42ref|XM_476182.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
43gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
44emb|AJ011500.1|SVI011500 Streptomyces violaceoruber Tu22 granati... 40 5.5
45gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.5
46emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 40 5.5
47gb|AF521085.1| Streptomyces nanchangensis NS3226 polyether ionop... 40 5.5
48emb|AJ578458.1|SGR578458 Streptomyces griseus subsp. griseus chr... 40 5.5
49gb|AC009368.8| Drosophila melanogaster 3L BAC RP98-4F7 (Roswell ... 40 5.5
50dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.5
51gb|AF307090.1| Thiobacillus denitrificans CbbR (cbbR) gene, comp... 40 5.5
52gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.5
53emb|AJ575665.1|TAE575665 Triticum aestivum raftin1b gene, exons 1-3 40 5.5
54emb|AJ575664.1|TAE575664 Triticum aestivum mRNA for RAFTIN1b pro... 40 5.5
55gb|AC155646.4| Mus musculus 6 BAC RP24-195P20 (Roswell Park Canc... 40 5.5
56dbj|AK109427.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
57dbj|AK105947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
58dbj|AK061473.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
59gb|AE003520.4| Drosophila melanogaster chromosome 3L, section 65... 40 5.5 
>ref|NM_191551.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1290

 Score =  238 bits (120), Expect = 1e-59
 Identities = 180/200 (90%)
 Strand = Plus / Minus

                                                                        
Query: 210  agccgcggcgggtccagacaacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 269
            |||||| ||| |||||||| |||||||||||||||||||||||||| |||||| |   ||
Sbjct: 1288 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 1229

                                                                        
Query: 270  cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 329
            | |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct: 1228 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 1169

                                                                        
Query: 330  cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 389
            |||||||||||||||||||||||||  ||||||||||||||||| |||| ||||||| ||
Sbjct: 1168 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 1109

                                
Query: 390  acgccctggtcgcctgcgtc 409
            ||||||  |||||| |||||
Sbjct: 1108 acgcccgcgtcgcccgcgtc 1089
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  238 bits (120), Expect = 1e-59
 Identities = 180/200 (90%)
 Strand = Plus / Minus

                                                                            
Query: 210      agccgcggcgggtccagacaacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 269
                |||||| ||| |||||||| |||||||||||||||||||||||||| |||||| |   ||
Sbjct: 30585516 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 30585457

                                                                            
Query: 270      cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 329
                | |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct: 30585456 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 30585397

                                                                            
Query: 330      cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 389
                |||||||||||||||||||||||||  ||||||||||||||||| |||| ||||||| ||
Sbjct: 30585396 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 30585337

                                    
Query: 390      acgccctggtcgcctgcgtc 409
                ||||||  |||||| |||||
Sbjct: 30585336 acgcccgcgtcgcccgcgtc 30585317
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>dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0036G09
          Length = 124118

 Score =  238 bits (120), Expect = 1e-59
 Identities = 180/200 (90%)
 Strand = Plus / Minus

                                                                         
Query: 210   agccgcggcgggtccagacaacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 269
             |||||| ||| |||||||| |||||||||||||||||||||||||| |||||| |   ||
Sbjct: 68120 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 68061

                                                                         
Query: 270   cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 329
             | |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct: 68060 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 68001

                                                                         
Query: 330   cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 389
             |||||||||||||||||||||||||  ||||||||||||||||| |||| ||||||| ||
Sbjct: 68000 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 67941

                                 
Query: 390   acgccctggtcgcctgcgtc 409
             ||||||  |||||| |||||
Sbjct: 67940 acgcccgcgtcgcccgcgtc 67921
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>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1060H01
          Length = 157987

 Score =  238 bits (120), Expect = 1e-59
 Identities = 180/200 (90%)
 Strand = Plus / Minus

                                                                         
Query: 210   agccgcggcgggtccagacaacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 269
             |||||| ||| |||||||| |||||||||||||||||||||||||| |||||| |   ||
Sbjct: 27793 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 27734

                                                                         
Query: 270   cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 329
             | |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct: 27733 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 27674

                                                                         
Query: 330   cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 389
             |||||||||||||||||||||||||  ||||||||||||||||| |||| ||||||| ||
Sbjct: 27673 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 27614

                                 
Query: 390   acgccctggtcgcctgcgtc 409
             ||||||  |||||| |||||
Sbjct: 27613 acgcccgcgtcgcccgcgtc 27594
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>dbj|AK106043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E03, full
            insert sequence
          Length = 1617

 Score =  238 bits (120), Expect = 1e-59
 Identities = 180/200 (90%)
 Strand = Plus / Minus

                                                                        
Query: 210  agccgcggcgggtccagacaacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 269
            |||||| ||| |||||||| |||||||||||||||||||||||||| |||||| |   ||
Sbjct: 1362 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 1303

                                                                        
Query: 270  cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 329
            | |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct: 1302 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 1243

                                                                        
Query: 330  cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 389
            |||||||||||||||||||||||||  ||||||||||||||||| |||| ||||||| ||
Sbjct: 1242 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 1183

                                
Query: 390  acgccctggtcgcctgcgtc 409
            ||||||  |||||| |||||
Sbjct: 1182 acgcccgcgtcgcccgcgtc 1163
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>dbj|AK065358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013011A15, full
            insert sequence
          Length = 1618

 Score =  238 bits (120), Expect = 1e-59
 Identities = 180/200 (90%)
 Strand = Plus / Minus

                                                                        
Query: 210  agccgcggcgggtccagacaacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 269
            |||||| ||| |||||||| |||||||||||||||||||||||||| |||||| |   ||
Sbjct: 1363 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 1304

                                                                        
Query: 270  cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 329
            | |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct: 1303 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 1244

                                                                        
Query: 330  cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 389
            |||||||||||||||||||||||||  ||||||||||||||||| |||| ||||||| ||
Sbjct: 1243 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 1184

                                
Query: 390  acgccctggtcgcctgcgtc 409
            ||||||  |||||| |||||
Sbjct: 1183 acgcccgcgtcgcccgcgtc 1164
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>dbj|AK059056.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F04, full
            insert sequence
          Length = 1616

 Score =  238 bits (120), Expect = 1e-59
 Identities = 180/200 (90%)
 Strand = Plus / Minus

                                                                        
Query: 210  agccgcggcgggtccagacaacgtggtcctgcggcaggaagtggcacaccggcgcgccgc 269
            |||||| ||| |||||||| |||||||||||||||||||||||||| |||||| |   ||
Sbjct: 1354 agccgctgcgtgtccagacgacgtggtcctgcggcaggaagtggcagaccggcaccgtgc 1295

                                                                        
Query: 270  cgggcttcaccttgagcacctggaacgcgacgtgccccgggttccagccggccgtgtcgg 329
            | |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct: 1294 ctggcttcaccttgagcacctggaacgcgacgtgcttcgggttccacccggccgtgtcgg 1235

                                                                        
Query: 330  cgtggcacaccgcgacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgt 389
            |||||||||||||||||||||||||  ||||||||||||||||| |||| ||||||| ||
Sbjct: 1234 cgtggcacaccgcgacggcctccacgcccgtgccgtccctgccggccatcgacaccgcgt 1175

                                
Query: 390  acgccctggtcgcctgcgtc 409
            ||||||  |||||| |||||
Sbjct: 1174 acgcccgcgtcgcccgcgtc 1155
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>ref|XM_474966.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 858

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 100/122 (81%)
 Strand = Plus / Minus

                                                                       
Query: 283 gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 342
           |||||||||||| ||  |||||   ||||||||  | |||||||||| |||||| || ||
Sbjct: 783 gagcacctggaaggcagcgtgctttgggttccactctgccgtgtcggtgtggcatacggc 724

                                                                       
Query: 343 gacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgtacgccctggtcgc 402
           ||| |||||||||||||  |||||  |||||||||  ||| || |||||||||| |||||
Sbjct: 723 gaccgcctccaccgccgcaccgtctttgccgaccaacgacgccttgtacgccctcgtcgc 664

             
Query: 403 ct 404
           ||
Sbjct: 663 ct 662
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 100/122 (81%)
 Strand = Plus / Minus

                                                                           
Query: 283     gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 342
               |||||||||||| ||  |||||   ||||||||  | |||||||||| |||||| || ||
Sbjct: 8383422 gagcacctggaaggcagcgtgctttgggttccactctgccgtgtcggtgtggcatacggc 8383363

                                                                           
Query: 343     gacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgtacgccctggtcgc 402
               ||| |||||||||||||  |||||  |||||||||  ||| || |||||||||| |||||
Sbjct: 8383362 gaccgcctccaccgccgcaccgtctttgccgaccaacgacgccttgtacgccctcgtcgc 8383303

                 
Query: 403     ct 404
               ||
Sbjct: 8383302 ct 8383301
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>emb|AL731592.2|OSJN00242 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B17,
             complete sequence
          Length = 99093

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 100/122 (81%)
 Strand = Plus / Minus

                                                                         
Query: 283   gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 342
             |||||||||||| ||  |||||   ||||||||  | |||||||||| |||||| || ||
Sbjct: 95990 gagcacctggaaggcagcgtgctttgggttccactctgccgtgtcggtgtggcatacggc 95931

                                                                         
Query: 343   gacggcctccaccgccgtgccgtccctgccgaccatggacaccgtgtacgccctggtcgc 402
             ||| |||||||||||||  |||||  |||||||||  ||| || |||||||||| |||||
Sbjct: 95930 gaccgcctccaccgccgcaccgtctttgccgaccaacgacgccttgtacgccctcgtcgc 95871

               
Query: 403   ct 404
             ||
Sbjct: 95870 ct 95869
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>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 283   gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 342
             |||||| ||||| ||  ||||| | ||||||||| | | |||||||| ||||||||| ||
Sbjct: 38624 gagcacatggaaggcagcgtgctctgggttccagtccgacgtgtcggtgtggcacacggc 38683

                            
Query: 343   gacggcctccaccgc 357
             ||| |||||||||||
Sbjct: 38684 gaccgcctccaccgc 38698
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                           
Query: 283     gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 342
               |||||| ||||| ||  ||||| | ||||||||| | | |||||||| ||||||||| ||
Sbjct: 3444669 gagcacatggaaggcagcgtgctctgggttccagtccgacgtgtcggtgtggcacacggc 3444728

                              
Query: 343     gacggcctccaccgc 357
               ||| |||||||||||
Sbjct: 3444729 gaccgcctccaccgc 3444743
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>dbj|AK067523.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107B22, full
            insert sequence
          Length = 2088

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                        
Query: 283  gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 342
            |||||| ||||| ||  ||||| | ||||||||| | | |||||||| ||||||||| ||
Sbjct: 1735 gagcacatggaaggcagcgtgctctgggttccagtccgacgtgtcggtgtggcacacggc 1676

                           
Query: 343  gacggcctccaccgc 357
            ||| |||||||||||
Sbjct: 1675 gaccgcctccaccgc 1661
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                           
Query: 283     gagcacctggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacaccgc 342
               |||||| ||||| ||  ||||| | ||||||||| | | |||||||| ||||||||| ||
Sbjct: 3453373 gagcacatggaaggcagcgtgctctgggttccagtccgacgtgtcggtgtggcacacggc 3453432

                              
Query: 343     gacggcctccaccgc 357
               ||| |||||||||||
Sbjct: 3453433 gaccgcctccaccgc 3453447
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                                 
Query: 291      ggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacac 339
                |||||||| ||||  |||||| ||||| || ||||||||||||||||||
Sbjct: 18403709 ggaacgcggcgtggtccgggtcccagcgggacgtgtcggcgtggcacac 18403661
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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0463G11
          Length = 154188

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                               
Query: 291    ggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacac 339
              |||||||| ||||  |||||| ||||| || ||||||||||||||||||
Sbjct: 118445 ggaacgcggcgtggtccgggtcccagcgggacgtgtcggcgtggcacac 118397
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>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463D04
          Length = 145828

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 291   ggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacac 339
             |||||||| ||||  |||||| ||||| || ||||||||||||||||||
Sbjct: 65583 ggaacgcggcgtggtccgggtcccagcgggacgtgtcggcgtggcacac 65535
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>gb|AF042275.1|AF042275 Oryza sativa anther-specific protein gene, complete cds
          Length = 2757

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 291  ggaacgcgacgtgccccgggttccagccggccgtgtcggcgtggcacac 339
            |||||||| ||||  |||||| ||||| || ||||||||||||||||||
Sbjct: 2440 ggaacgcggcgtggtccgggtcccagcgggacgtgtcggcgtggcacac 2392
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>ref|XM_483156.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1451

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 241  cggcaggaagtggcacaccggcgcgccgccgggctt 276
            ||||| || |||||||||||||| ||||||||||||
Sbjct: 1266 cggcatgaggtggcacaccggcgagccgccgggctt 1231
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>ref|XM_476171.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 720

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 235 gtcctgcggcaggaagtggcacaccggc 262
           |||||| |||||||||||||||||||||
Sbjct: 696 gtcctgtggcaggaagtggcacaccggc 669
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>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15,
              complete sequence
          Length = 184316

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 235    gtcctgcggcaggaagtggcacaccggc 262
              |||||| |||||||||||||||||||||
Sbjct: 176987 gtcctgtggcaggaagtggcacaccggc 177014
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>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08,
            complete sequence
          Length = 148348

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 235  gtcctgcggcaggaagtggcacaccggc 262
            |||||| |||||||||||||||||||||
Sbjct: 6913 gtcctgtggcaggaagtggcacaccggc 6940



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 235    gtcctgcggcaggaagtggcacaccggc 262
              |||||| |||| ||||||||||||||||
Sbjct: 121050 gtcctgtggcaagaagtggcacaccggc 121023
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 241      cggcaggaagtggcacaccggcgcgccgccgggctt 276
                ||||| || |||||||||||||| ||||||||||||
Sbjct: 24527461 cggcatgaggtggcacaccggcgagccgccgggctt 24527426
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 235     gtcctgcggcaggaagtggcacaccggc 262
               |||||| |||||||||||||||||||||
Sbjct: 7052064 gtcctgtggcaggaagtggcacaccggc 7052091



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 235     gtcctgcggcaggaagtggcacaccggc 262
               |||||| |||| ||||||||||||||||
Sbjct: 7166201 gtcctgtggcaagaagtggcacaccggc 7166174
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>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0026F07
          Length = 137354

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 241   cggcaggaagtggcacaccggcgcgccgccgggctt 276
             ||||| || |||||||||||||| ||||||||||||
Sbjct: 35721 cggcatgaggtggcacaccggcgagccgccgggctt 35686
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>emb|AJ575668.1|OSA575668 Oryza sativa (japonica cultivar-group) raftin1 gene, exons 1-3
          Length = 1479

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 241  cggcaggaagtggcacaccggcgcgccgccgggctt 276
            ||||| || |||||||||||||| ||||||||||||
Sbjct: 1431 cggcatgaggtggcacaccggcgagccgccgggctt 1396
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>emb|AJ575667.1|OSA575667 Oryza sativa (japonica cultivar-group) mRNA for RAFTIN1 protein
          Length = 1301

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 241  cggcaggaagtggcacaccggcgcgccgccgggctt 276
            ||||| || |||||||||||||| ||||||||||||
Sbjct: 1253 cggcatgaggtggcacaccggcgagccgccgggctt 1218
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>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1142B04
          Length = 161964

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 241    cggcaggaagtggcacaccggcgcgccgccgggctt 276
              ||||| || |||||||||||||| ||||||||||||
Sbjct: 143177 cggcatgaggtggcacaccggcgagccgccgggctt 143142
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>dbj|AK120942.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037I21, full
            insert sequence
          Length = 1450

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 241  cggcaggaagtggcacaccggcgcgccgccgggctt 276
            ||||| || |||||||||||||| ||||||||||||
Sbjct: 1265 cggcatgaggtggcacaccggcgagccgccgggctt 1230
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>ref|NM_187695.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1572

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 345  cggcctccaccgccgtgccgtcc 367
            |||||||||||||||||||||||
Sbjct: 1237 cggcctccaccgccgtgccgtcc 1215
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 345     cggcctccaccgccgtgccgtcc 367
               |||||||||||||||||||||||
Sbjct: 6412446 cggcctccaccgccgtgccgtcc 6412468
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>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09,
             complete sequence
          Length = 146568

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 345   cggcctccaccgccgtgccgtcc 367
             |||||||||||||||||||||||
Sbjct: 92572 cggcctccaccgccgtgccgtcc 92594
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 345     cggcctccaccgccgtgccgtcc 367
               |||||||||||||||||||||||
Sbjct: 6411659 cggcctccaccgccgtgccgtcc 6411681
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>dbj|AK109504.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D01, full
            insert sequence
          Length = 2009

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 345  cggcctccaccgccgtgccgtcc 367
            |||||||||||||||||||||||
Sbjct: 1297 cggcctccaccgccgtgccgtcc 1275
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>dbj|AK105985.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G07, full
            insert sequence
          Length = 1672

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 345  cggcctccaccgccgtgccgtcc 367
            |||||||||||||||||||||||
Sbjct: 1279 cggcctccaccgccgtgccgtcc 1257
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>dbj|AK062585.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E07, full
            insert sequence
          Length = 1710

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 345  cggcctccaccgccgtgccgtcc 367
            |||||||||||||||||||||||
Sbjct: 1297 cggcctccaccgccgtgccgtcc 1275
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 255     acaccggcgcgccgccgggctt 276
               ||||||||||||||||||||||
Sbjct: 2059932 acaccggcgcgccgccgggctt 2059911
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>gb|AC009108.10| Homo sapiens chromosome 16 clone RP11-463O9, complete sequence
          Length = 168656

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 348   cctccaccgccgtgccgtccctgccg 373
             |||||||||| |||||||||||||||
Sbjct: 84914 cctccaccgcggtgccgtccctgccg 84939
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 255    acaccggcgcgccgccgggctt 276
              ||||||||||||||||||||||
Sbjct: 221473 acaccggcgcgccgccgggctt 221452
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 255     acaccggcgcgccgccgggctt 276
               ||||||||||||||||||||||
Sbjct: 2103471 acaccggcgcgccgccgggctt 2103492
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>gb|AY111975.1| Zea mays CL56086_1 mRNA sequence
          Length = 517

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 250 gtggcacaccggcgcgccgccgggcttcaccttgagcacctggaacgcgacgtgccccgg 309
           |||||| |||| |||||| ||||||||||| | ||||| |  ||||||| || || || |
Sbjct: 266 gtggcagaccgccgcgcctccgggcttcacgtcgagcagcctgaacgcggcgcgcacccg 325

                                         
Query: 310 gttccagccggccgtgtcggcgtggcacac 339
           |||||| | || |||||||| | |||||||
Sbjct: 326 gttccaccgggacgtgtcggtgcggcacac 355
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>ref|XM_476182.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 780

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 235 gtcctgcggcaggaagtggcacaccggc 262
           |||||| |||| ||||||||||||||||
Sbjct: 756 gtcctgtggcaagaagtggcacaccggc 729
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>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0012L23, complete sequence
          Length = 121659

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 235   gtcctgcggcaggaagtggcacaccggc 262
             |||||| |||| ||||||||||||||||
Sbjct: 26215 gtcctgtggcaagaagtggcacaccggc 26188
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>emb|AJ011500.1|SVI011500 Streptomyces violaceoruber Tu22 granaticin biosynthetic gene cluster
          Length = 39250

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   caccgtgtacgccctggtcg 401
             ||||||||||||||||||||
Sbjct: 34275 caccgtgtacgccctggtcg 34294
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 339     ccgcgacggcctccaccgcc 358
               ||||||||||||||||||||
Sbjct: 2611469 ccgcgacggcctccaccgcc 2611488
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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    acgccctggtcgcctgcgtc 409
              ||||||||||||||||||||
Sbjct: 253988 acgccctggtcgcctgcgtc 254007
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>gb|AF521085.1| Streptomyces nanchangensis NS3226 polyether ionophore nanchangmycin
             biosynthetic gene cluster, complete sequence
          Length = 132544

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   caccggcgcgccgccgggct 275
             ||||||||||||||||||||
Sbjct: 53172 caccggcgcgccgccgggct 53191



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   caccggcgcgccgccgggct 275
             ||||||||||||||||||||
Sbjct: 41331 caccggcgcgccgccgggct 41350
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>emb|AJ578458.1|SGR578458 Streptomyces griseus subsp. griseus chromomycin A3 biosynthesis gene
             cluster, strain ATCC13273
          Length = 42074

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   gcacaccggcgcgccgccgg 272
             ||||||||||||||||||||
Sbjct: 30211 gcacaccggcgcgccgccgg 30192
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>gb|AC009368.8| Drosophila melanogaster 3L BAC RP98-4F7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 158816

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    gtcctgcggcaggaagtggc 254
              ||||||||||||||||||||
Sbjct: 110067 gtcctgcggcaggaagtggc 110086
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    cggcctccaccgccgtgccg 364
              ||||||||||||||||||||
Sbjct: 216331 cggcctccaccgccgtgccg 216350
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>gb|AF307090.1| Thiobacillus denitrificans CbbR (cbbR) gene, complete cds and
            carboxysome operon, complete sequence
          Length = 6577

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 352  caccgccgtgccgtccctgc 371
            ||||||||||||||||||||
Sbjct: 1612 caccgccgtgccgtccctgc 1631
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 352     caccgccgtgccgtccctgc 371
               ||||||||||||||||||||
Sbjct: 2724273 caccgccgtgccgtccctgc 2724254
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>emb|AJ575665.1|TAE575665 Triticum aestivum raftin1b gene, exons 1-3
          Length = 1503

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 241  cggcaggaagtggcacaccggcgcgccgccgggctt 276
            ||||| || |||||| ||||||| ||||||||||||
Sbjct: 1293 cggcatgaggtggcagaccggcgtgccgccgggctt 1258
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>emb|AJ575664.1|TAE575664 Triticum aestivum mRNA for RAFTIN1b protein
          Length = 1285

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 241  cggcaggaagtggcacaccggcgcgccgccgggctt 276
            ||||| || |||||| ||||||| ||||||||||||
Sbjct: 1065 cggcatgaggtggcagaccggcgtgccgccgggctt 1030
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>gb|AC155646.4| Mus musculus 6 BAC RP24-195P20 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 169883

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 268   gccgggcttcaccttgagcacctg 291
             |||| |||||||||||||||||||
Sbjct: 75347 gccgagcttcaccttgagcacctg 75370
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>dbj|AK109427.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C03, full
           insert sequence
          Length = 1053

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 235 gtcctgcggcaggaagtggcacaccggc 262
           |||||| |||| ||||||||||||||||
Sbjct: 858 gtcctgtggcaagaagtggcacaccggc 831
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>dbj|AK105947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C07, full
           insert sequence
          Length = 1111

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 235 gtcctgcggcaggaagtggcacaccggc 262
           |||||| |||| ||||||||||||||||
Sbjct: 856 gtcctgtggcaagaagtggcacaccggc 829
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>dbj|AK061473.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E12, full
           insert sequence
          Length = 1088

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 235 gtcctgcggcaggaagtggcacaccggc 262
           |||||| |||| ||||||||||||||||
Sbjct: 858 gtcctgtggcaagaagtggcacaccggc 831
to top
>gb|AE003520.4| Drosophila melanogaster chromosome 3L, section 65 of 83 of the complete
             sequence
          Length = 275124

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   gtcctgcggcaggaagtggc 254
             ||||||||||||||||||||
Sbjct: 32835 gtcctgcggcaggaagtggc 32854


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,615,708
Number of Sequences: 3902068
Number of extensions: 2615708
Number of successful extensions: 45392
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44527
Number of HSP's gapped (non-prelim): 865
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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