ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet64f07 |
|---|---|
| Clone Library Name | barley_pub |
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast| precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 Score = 67.4 bits (163), Expect = 1e-11 Identities = 32/47 (68%), Positives = 32/47 (68%) Frame = -3 Query: 414 AEIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLHTTIFDTF 274 AEIKHAR ATGKGPLNNWATHLSDPLHTTI DTF Sbjct: 241 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast| precursor (LHCII protein 4.2) (LHCB4.2) Length = 287 Score = 67.0 bits (162), Expect = 2e-11 Identities = 32/47 (68%), Positives = 32/47 (68%) Frame = -3 Query: 414 AEIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLHTTIFDTF 274 AEIKHAR ATGKGPLNNWATHLSDPLHTTI DTF Sbjct: 238 AEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 284
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 37.4 bits (85), Expect = 0.014 Identities = 16/25 (64%), Positives = 16/25 (64%) Frame = -3 Query: 348 TGKGPLNNWATHLSDPLHTTIFDTF 274 TGKGP N HLSDP H TI TF Sbjct: 226 TGKGPFENLLQHLSDPWHNTIVQTF 250
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 37.0 bits (84), Expect = 0.018 Identities = 18/46 (39%), Positives = 22/46 (47%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLHTTIFDTF 274 EIK+ R TG GP++N HL+DP H TIF F Sbjct: 222 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 37.0 bits (84), Expect = 0.018 Identities = 18/46 (39%), Positives = 22/46 (47%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLHTTIFDTF 274 EIK+ R TG GP++N HL+DP H TIF F Sbjct: 222 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 34.3 bits (77), Expect = 0.12 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLHTTIFD 280 EIK+ R TGKGPL N A HL+DP++ ++ Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWN 258
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 34.3 bits (77), Expect = 0.12 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGPL N A HLSDP++ Sbjct: 216 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 254
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 212 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250
>CB21_RAPSA (P14584) Chlorophyll a-b binding of LHCII type 1 protein| (Chlorophyll a-b binding of LHCII type I protein) (CAB) (LHCP) (Fragment) Length = 124 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 72 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type I CAB-1D)| (LHCP) (Fragment) Length = 116 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 64 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 209 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 247
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 214 EIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVN 252
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor| (LHCII type I CAB-1C) (LHCP) (Fragments) Length = 265 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type I CAB-1A) (LHCP) (Fragments) Length = 265 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL+DP++ Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor| (LHCII type I CAB-3B) (LHCP) (Fragments) Length = 267 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A H++DP++ Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A H++DP++ Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGP+ N A HL+DP++ Sbjct: 212 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVN 250
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGPL N A HL+DP++ Sbjct: 212 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGP+ N A HL+DP++ Sbjct: 226 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGP+ N A HL+DP++ Sbjct: 226 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor| (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa protein) Length = 246 Score = 33.1 bits (74), Expect = 0.27 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -3 Query: 345 GKGPLNNWATHLSDPLHTTIFD 280 G GPL N ATHL+DP H I D Sbjct: 215 GTGPLENLATHLADPWHNNIGD 236
>CB21_EUGGR (P12327) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 127 Score = 33.1 bits (74), Expect = 0.27 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDP 301 EIK+ R TG+GP+ NW HL DP Sbjct: 70 EIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGP+ N A HL+DP++ Sbjct: 222 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 260
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGPL N A HL+DP++ Sbjct: 203 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 241
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGPL N A HL+DP++ Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 206 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGPL N A HL+DP++ Sbjct: 154 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 192
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGPL N A HL+DP++ Sbjct: 204 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 242
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 33.1 bits (74), Expect = 0.27 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGPL N A HL+DP++ Sbjct: 217 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 255
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 32.7 bits (73), Expect = 0.35 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL+N HL+DP++ Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVN 253
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 32.7 bits (73), Expect = 0.35 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGPL N A HL+DP++ Sbjct: 176 ELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVN 214
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 32.3 bits (72), Expect = 0.45 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGP+ N A HL+DP++ Sbjct: 215 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 32.3 bits (72), Expect = 0.45 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGP+ N A HL+DP++ Sbjct: 215 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 32.3 bits (72), Expect = 0.45 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGPL N A H++DP++ Sbjct: 210 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 248
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 32.3 bits (72), Expect = 0.45 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL N A HL++P++ Sbjct: 193 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVN 231
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 32.0 bits (71), Expect = 0.59 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -3 Query: 408 IKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 IK+ R TGKGPL N A HL+DP++ Sbjct: 216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 32.0 bits (71), Expect = 0.59 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 EIK+ R TGKGP+ N A H++DP+ Sbjct: 212 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPV 249
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 256 Score = 32.0 bits (71), Expect = 0.59 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDP 301 EIK+ R TGKGP+ N A HL+DP Sbjct: 204 EIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 31.6 bits (70), Expect = 0.78 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDP 301 EIK+ R TG+GP+ N A HLSDP Sbjct: 225 EIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDP 261
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 31.6 bits (70), Expect = 0.78 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K R TGKGPL N A H++DP++ Sbjct: 213 ELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVN 251
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 31.2 bits (69), Expect = 1.0 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 EIK+ R TGKGPL + A H++DP++ Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 31.2 bits (69), Expect = 1.0 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 EIK+ R TGKGPL N HL+DP+ Sbjct: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 253
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 30.8 bits (68), Expect = 1.3 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 EIK+ R TGKGP+ N + H++DP+ Sbjct: 185 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPV 222
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 30.8 bits (68), Expect = 1.3 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E K+ R TGKGPL N A HL DP++ Sbjct: 215 ETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVN 253
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 30.8 bits (68), Expect = 1.3 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 EIK+ R TGKGPL N HL DP+ Sbjct: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 30.8 bits (68), Expect = 1.3 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 EIK+ R TGKGP+ N + H++DP+ Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPV 250
>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast| precursor (CAB) (LHCP) Length = 266 Score = 30.4 bits (67), Expect = 1.7 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 EIK+ R TGKGP+ N HL+DP+ Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 251
>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2| (Chlorophyll a-b binding protein type II 2) (CAB) (LHCP) (Fragment) Length = 150 Score = 30.4 bits (67), Expect = 1.7 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 EIK+ R TGKGP+ N HL+DP+ Sbjct: 98 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 30.4 bits (67), Expect = 1.7 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDP 301 E+K+ R TGKGP+ N + HL+DP Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 30.4 bits (67), Expect = 1.7 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 EIK+ R TGKGP+ N HL+DP+ Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 30.4 bits (67), Expect = 1.7 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLH 295 E+K+ R TGKGPL N A HL+ P++ Sbjct: 211 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVN 249
>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 273 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/43 (32%), Positives = 18/43 (41%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLHTTIF 283 EIK+ R TGKGP+ N HL++P F Sbjct: 222 EIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAF 264
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDP 301 EIK+ R TGKGP+ N HL+DP Sbjct: 201 EIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237
>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor| [Contains: LH38 protein 1; LH38 protein 2; LH38 protein 3] (Fragment) Length = 530 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -3 Query: 414 AEIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLHTTI 286 AE+K+ R ATG+ PL N + HL++P+ I Sbjct: 313 AEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANI 355 Score = 28.9 bits (63), Expect = 5.0 Identities = 16/46 (34%), Positives = 18/46 (39%) Frame = -3 Query: 414 AEIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLHTTIFDT 277 AEIK+ R G PL N A HL PL I D+ Sbjct: 125 AEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADS 170
>SGS3_DROER (P13730) Salivary glue protein Sgs-3 precursor| Length = 328 Score = 29.3 bits (64), Expect = 3.8 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Frame = -1 Query: 329 TTGPPTSATRCTPPSLT----PSAPLKWSVVEQFLSAQLQNGRTRVRVT 195 TT P + TRC PP+ T P+ P + + + +A+ RT VR T Sbjct: 50 TTCRPPTTTRCPPPTTTRCPPPTRPAECTATTKRPTARPTTRRTTVRAT 98
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 29.3 bits (64), Expect = 3.8 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -1 Query: 329 TTGPPTSATRCTPPSLTPSAPL 264 T PPT+ T PP+ TPS P+ Sbjct: 1483 TPSPPTTTTTTPPPTTTPSPPM 1504 Score = 29.3 bits (64), Expect = 3.8 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -1 Query: 329 TTGPPTSATRCTPPSLTPSAPL 264 T PPT+ T PP+ TPS P+ Sbjct: 1421 TPSPPTTTTTTPPPTTTPSPPI 1442 Score = 28.5 bits (62), Expect = 6.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 Query: 329 TTGPPTSATRCTPPSLTPSAP 267 T PPT+ T PP+ TPS P Sbjct: 1601 TPSPPTTTTTTPPPTTTPSPP 1621 Score = 28.5 bits (62), Expect = 6.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 Query: 329 TTGPPTSATRCTPPSLTPSAP 267 T PPT+ T PP+ TPS P Sbjct: 1522 TPSPPTTTTTTPPPTTTPSPP 1542
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 29.3 bits (64), Expect = 3.8 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 EIK+ R TGKGP+ N H++DP+ Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPV 250
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 29.3 bits (64), Expect = 3.8 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 EIK+ R TGKGP+ N H++DP+ Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 29.3 bits (64), Expect = 3.8 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 EIK+ R TGKGPL N HL +P+ Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPV 250
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/42 (30%), Positives = 18/42 (42%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLHTTI 286 EIK+ R TG GP N HL+DP++ + Sbjct: 225 EIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNV 266
>MURE_WOLSU (Q7M8F9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 434 Score = 28.5 bits (62), Expect = 6.6 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +2 Query: 53 H*VTIGSYFTNHQVPAALLCDRTSIIIN-KGSLRYPLIHHSSYKTKARSLHG 205 H + + F + P + D + N + +L Y + H SSY KA SLHG Sbjct: 173 HYIQTKNSFFDDSTPKLINKDESKAKFNLQNALSYGIEHPSSYHVKAYSLHG 224
>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 28.5 bits (62), Expect = 6.6 Identities = 14/43 (32%), Positives = 18/43 (41%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPLHTTIF 283 EIK+ R TGKGP+ N HL++P F Sbjct: 201 EIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAF 243
>UBP1_SCHPO (Q9USM5) Probable ubiquitin carboxyl-terminal hydrolase 1 (EC| 3.1.2.15) (Ubiquitin thioesterase 1) (Ubiquitin-specific processing protease 1) (Deubiquitinating enzyme 1) Length = 849 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 2 IAKNKQKISSRLMYKWMH*VTIGSYFTNHQVPAALLCDRTSI 127 + KNK KIS ++ +KW H V GS +P C R ++ Sbjct: 530 VLKNKDKISKKI-HKWDHVVLYGSTANGLTIPIVHGCKRPAM 570
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 E+K+ R TGKGP+ N H++DP+ Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPV 250
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = -3 Query: 411 EIKHARXXXXXXXXXXXXXXATGKGPLNNWATHLSDPL 298 E+K+ R TGKGP+ N H++DP+ Sbjct: 211 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,922,923 Number of Sequences: 219361 Number of extensions: 850880 Number of successful extensions: 2437 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 2332 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2435 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
