ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet64d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NPY5R_CANFA (O62729) Neuropeptide Y receptor type 5 (NPY5-R) (NP... 28 6.3
2DPOD2_DROME (Q9W088) DNA polymerase delta small subunit (EC 2.7.... 28 6.3
3PDXB_VIBVY (Q7MIT6) Erythronate-4-phosphate dehydrogenase (EC 1.... 28 8.3
4PDXB_VIBPA (Q87MN8) Erythronate-4-phosphate dehydrogenase (EC 1.... 28 8.3

>NPY5R_CANFA (O62729) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)|
           (Y5 receptor) (NPYY5)
          Length = 446

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -1

Query: 213 WSY*FDPLIKQEYLLVLACVSPNMGRTGSKHRGKGFPPN---VKALGFYSRKGTPQLPSL 43
           WSY F    ++ Y    ACV P   R   ++  +  P N   V++    S K  P +P+ 
Sbjct: 277 WSYSFIRKHRRRYSKKTACVLPAPARPPQENHSRMLPENFGSVRSQHSSSSKFIPGVPTC 336

Query: 42  FNKQMEK 22
           F  + E+
Sbjct: 337 FEVKPEE 343



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>DPOD2_DROME (Q9W088) DNA polymerase delta small subunit (EC 2.7.7.7)|
          Length = 431

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 83  PSAFTFGGKPFPRCLLPVLPIFGETQASTSKYSC 184
           P+ F    +PF +C+ P        QA T+ YSC
Sbjct: 275 PANFMLPQQPFHKCMFPQAAQLATFQAVTNPYSC 308



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>PDXB_VIBVY (Q7MIT6) Erythronate-4-phosphate dehydrogenase (EC 1.1.1.-)|
          Length = 377

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 234 DGFDTSLWSY*FDPLIKQEYLLVLACVSPNMGRTGSKHRGKG 109
           DGF  +L  + F+P +  E L +LA  +P++   G + + +G
Sbjct: 226 DGFTAALDVFEFEPEVDMELLPLLAFATPHVAGYGLEGKARG 267



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>PDXB_VIBPA (Q87MN8) Erythronate-4-phosphate dehydrogenase (EC 1.1.1.-)|
          Length = 377

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 234 DGFDTSLWSY*FDPLIKQEYLLVLACVSPNMGRTGSKHRGKG 109
           DGF  +L  + F+P +  E L +LA  +P++   G + + +G
Sbjct: 226 DGFTAALDVFEFEPEVDMELLPLLAFATPHVAGYGLEGKARG 267


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,946,889
Number of Sequences: 219361
Number of extensions: 750337
Number of successful extensions: 1627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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