ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet64c09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC010032.10| Drosophila melanogaster 3L BAC RP98-2N23 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 192399 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 175 acgtacgtacgtacgtacagcac 197 ||||||||||||||||||||||| Sbjct: 35431 acgtacgtacgtacgtacagcac 35409
>ref|NM_138225.2| Drosophila melanogaster CG13907-RA (CG13907), mRNA Length = 4593 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Plus Query: 175 acgtacgtacgtacgtacagcac 197 ||||||||||||||||||||||| Sbjct: 314 acgtacgtacgtacgtacagcac 336
>gb|AY089513.1| Drosophila melanogaster GH22266 full insert cDNA Length = 4629 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Plus Query: 175 acgtacgtacgtacgtacagcac 197 ||||||||||||||||||||||| Sbjct: 314 acgtacgtacgtacgtacagcac 336
>gb|AE003469.3| Drosophila melanogaster chromosome 3L, section 3 of 83 of the complete sequence Length = 286515 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 175 acgtacgtacgtacgtacagcac 197 ||||||||||||||||||||||| Sbjct: 254042 acgtacgtacgtacgtacagcac 254020
>ref|NM_197332.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0026L12.28), mRNA Length = 213 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 aacgtacgtacgtacgtacag 194 ||||||||||||||||||||| Sbjct: 152 aacgtacgtacgtacgtacag 172
>gb|AY658942.1| Synthetic construct Peudomonas aeruginosa clone FLH036025.01F PA1826 gene, partial cds Length = 906 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 cggccaccagcccggcgatgg 256 ||||||||||||||||||||| Sbjct: 706 cggccaccagcccggcgatgg 686
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 aacgtacgtacgtacgtacag 194 ||||||||||||||||||||| Sbjct: 71732 aacgtacgtacgtacgtacag 71712
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 aacgtacgtacgtacgtacag 194 ||||||||||||||||||||| Sbjct: 19304649 aacgtacgtacgtacgtacag 19304669
>gb|AE004609.1| Pseudomonas aeruginosa PAO1, section 170 of 529 of the complete genome Length = 12879 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cggccaccagcccggcgatgg 256 ||||||||||||||||||||| Sbjct: 922 cggccaccagcccggcgatgg 942
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 aacgtacgtacgtacgtacag 194 ||||||||||||||||||||| Sbjct: 19315925 aacgtacgtacgtacgtacag 19315945
>gb|AY024106.1| Oryza sativa microsatellite MRG6431 containing (GTAC)X8, genomic sequence Length = 232 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 taacgtacgtacgtacgtac 192 |||||||||||||||||||| Sbjct: 136 taacgtacgtacgtacgtac 117
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 cccgcggccaccagcccggcgatg 255 |||||| ||||||||||||||||| Sbjct: 3462315 cccgcgcccaccagcccggcgatg 3462292
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 taacgtacgtacgtacgtac 192 |||||||||||||||||||| Sbjct: 19330709 taacgtacgtacgtacgtac 19330728
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ccaccagcccggcgatggcg 258 |||||||||||||||||||| Sbjct: 555543 ccaccagcccggcgatggcg 555562
>emb|CR749176.14| Zebrafish DNA sequence from clone DKEY-43B13 in linkage group 19, complete sequence Length = 237649 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 acgtacgtacgtacgtacag 194 |||||||||||||||||||| Sbjct: 182227 acgtacgtacgtacgtacag 182208
>gb|DQ088033.1| Desulfovibrio gigas cytochrome bd operon, complete sequence; and Ca2+/Na+ antiporter gene, complete cds Length = 5052 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 ccgcggccaccagcccggcg 252 |||||||||||||||||||| Sbjct: 4718 ccgcggccaccagcccggcg 4737
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ggccaccagcccggcgatgg 256 |||||||||||||||||||| Sbjct: 214410 ggccaccagcccggcgatgg 214429
>emb|AL109947.19|HSJ919F19 Human DNA sequence from clone RP5-919F19 on chromosome 6q16.3-22.1 Contains the PPIL6 gene for peptidylprolyl isomerase (cyclophilin)-like 6 protein, the SMPD2 gene for sphingomyelin phosphodiesterase 2 neutral membrane (neutral sphingomyelinase), the MICAL1 gene for microtubule associated monoxygenase, calponin and LIM domain containing 1, the ZNF450 gene for zinc finger protein 450 and three CpG islands, complete sequence Length = 128960 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ctgcctccatcctggcctcgcccc 220 ||||||||| |||||||||||||| Sbjct: 72126 ctgcctccaccctggcctcgcccc 72149
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ccggcgatggcgcccaggcc 266 |||||||||||||||||||| Sbjct: 38049 ccggcgatggcgcccaggcc 38068
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ccggcgatggcgcccaggcc 266 |||||||||||||||||||| Sbjct: 294736 ccggcgatggcgcccaggcc 294755
>emb|BX640548.14| Zebrafish DNA sequence from clone CH211-198E12 in linkage group 11, complete sequence Length = 231587 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 acgtacgtacgtacgtacag 194 |||||||||||||||||||| Sbjct: 121453 acgtacgtacgtacgtacag 121472
>gb|AE012142.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 50 of 460 of the complete genome Length = 10036 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ccaccagcccggcgatggcg 258 |||||||||||||||||||| Sbjct: 3772 ccaccagcccggcgatggcg 3791
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agcccggcgatggcgcccag 263 |||||||||||||||||||| Sbjct: 1604514 agcccggcgatggcgcccag 1604533
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ccaccagcccggcgatggcg 258 |||||||||||||||||||| Sbjct: 545432 ccaccagcccggcgatggcg 545451
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 aacgtacgtacgtacgtaca 193 |||||||||||||||||||| Sbjct: 22913906 aacgtacgtacgtacgtaca 22913925
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 acagcactgcctccatcctggcct 214 ||||||||||||||| |||||||| Sbjct: 6098760 acagcactgcctccaccctggcct 6098737
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 taacgtacgtacgtacgtac 192 |||||||||||||||||||| Sbjct: 19324750 taacgtacgtacgtacgtac 19324769
>gb|AC137925.2| Oryza sativa chromosome 3 BAC OSJNBb0047D08 genomic sequence, complete sequence Length = 140507 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 taacgtacgtacgtacgtac 192 |||||||||||||||||||| Sbjct: 114870 taacgtacgtacgtacgtac 114889
>gb|AC084463.1|AC084463 Caenorhabditis briggsae cosmid CB037F21, complete sequence Length = 85644 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 gtgactgccaaccacaacaa 85 |||||||||||||||||||| Sbjct: 68326 gtgactgccaaccacaacaa 68345
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 3.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 233 ccgcggccaccagcccggcgatggcgcccagg 264 |||||||||||||| |||| ||| |||||||| Sbjct: 6382614 ccgcggccaccagcgcggccatgacgcccagg 6382583
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 ccgcggccaccagcccggcgatgg 256 |||||||||||||||||| ||||| Sbjct: 3149801 ccgcggccaccagcccggtgatgg 3149824
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 acagcactgcctccatcctggcct 214 ||||||||||||||| |||||||| Sbjct: 12579 acagcactgcctccaccctggcct 12556
>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644A02 Length = 144954 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 acagcactgcctccatcctggcct 214 ||||||||||||||| |||||||| Sbjct: 103259 acagcactgcctccaccctggcct 103236
>emb|AJ223471.1|ZMPHYTII Zea mays PHYT II gene for acidic phytase Length = 2990 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cagcccggcgatggcgccca 262 |||||||||||||||||||| Sbjct: 2360 cagcccggcgatggcgccca 2341
>dbj|AK106768.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F05, full insert sequence Length = 1448 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 acagcactgcctccatcctggcct 214 ||||||||||||||| |||||||| Sbjct: 762 acagcactgcctccaccctggcct 785
>dbj|AK104260.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G10, full insert sequence Length = 886 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 acagcactgcctccatcctggcct 214 ||||||||||||||| |||||||| Sbjct: 699 acagcactgcctccaccctggcct 676
>dbj|AK104000.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E04, full insert sequence Length = 848 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 acagcactgcctccatcctggcct 214 ||||||||||||||| |||||||| Sbjct: 699 acagcactgcctccaccctggcct 676
>dbj|AK072802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135E05, full insert sequence Length = 889 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 acagcactgcctccatcctggcct 214 ||||||||||||||| |||||||| Sbjct: 702 acagcactgcctccaccctggcct 679
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cggccaccagcccggcgatg 255 |||||||||||||||||||| Sbjct: 1504809 cggccaccagcccggcgatg 1504828
>dbj|AK067011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093K20, full insert sequence Length = 1494 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 taacgtacgtacgtacgtac 192 |||||||||||||||||||| Sbjct: 1401 taacgtacgtacgtacgtac 1382
>gb|AY109590.1| Zea mays CL1547_1 mRNA sequence Length = 1807 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cagcccggcgatggcgccca 262 |||||||||||||||||||| Sbjct: 1070 cagcccggcgatggcgccca 1051
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 aacgtacgtacgtacgtaca 193 |||||||||||||||||||| Sbjct: 22842097 aacgtacgtacgtacgtaca 22842116
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 aacgtacgtacgtacgtaca 193 |||||||||||||||||||| Sbjct: 23183 aacgtacgtacgtacgtaca 23202
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aacgtacgtacgtacgtaca 193 |||||||||||||||||||| Sbjct: 42938 aacgtacgtacgtacgtaca 42919
>gb|U75531.1|ZMU75531 Zea mays phytase (phyS11) mRNA, complete cds Length = 1335 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cagcccggcgatggcgccca 262 |||||||||||||||||||| Sbjct: 1057 cagcccggcgatggcgccca 1038
>emb|AL627128.16| Mouse DNA sequence from clone RP23-133J9 on chromosome 4, complete sequence Length = 183089 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aacgtacgtacgtacgtaca 193 |||||||||||||||||||| Sbjct: 113111 aacgtacgtacgtacgtaca 113092
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 ccggcgatggcgcccaggccagcc 270 |||||||||||||| ||||||||| Sbjct: 872737 ccggcgatggcgccgaggccagcc 872714 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,990,378 Number of Sequences: 3902068 Number of extensions: 1990378 Number of successful extensions: 52408 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51576 Number of HSP's gapped (non-prelim): 804 length of query: 271 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 249 effective length of database: 17,147,199,772 effective search space: 4269652743228 effective search space used: 4269652743228 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
