>emb|AJ276012.1|HVU276012 Hordeum vulgare partial mRNA for alpha-tubulin 4 (atub4 gene)
          Length = 1050

 Score =  387 bits (195), Expect = e-105
 Identities = 195/195 (100%)
 Strand = Plus / Minus

                                                                        
Query: 8    ttaagcgagatacttgttccacgaagtactaatgatgcagttcaacagcgacatagaaag 67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 ttaagcgagatacttgttccacgaagtactaatgatgcagttcaacagcgacatagaaag 974

                                                                        
Query: 68   caccgatggcttacaacctcaccccaaaacaggacggcaaagcaacatgtagttaaagat 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973  caccgatggcttacaacctcaccccaaaacaggacggcaaagcaacatgtagttaaagat 914

                                                                        
Query: 128  aggcggcagaggagacggatcctccgtcgagcggacgagcagatcagtagtcgtcgtcct 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913  aggcggcagaggagacggatcctccgtcgagcggacgagcagatcagtagtcgtcgtcct 854

                           
Query: 188  cctcgccatcctcgt 202
            |||||||||||||||
Sbjct: 853  cctcgccatcctcgt 839

>ref|XM_469743.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1236

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 174 gtagtcgtcgtcctcctcgcc 194
           |||||||||||||||||||||
Sbjct: 975 gtagtcgtcgtcctcctcgcc 955

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 174      gtagtcgtcgtcctcctcgcc 194
                |||||||||||||||||||||
Sbjct: 30504766 gtagtcgtcgtcctcctcgcc 30504786

>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete
             sequence
          Length = 139872

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   gtagtcgtcgtcctcctcgcc 194
             |||||||||||||||||||||
Sbjct: 36339 gtagtcgtcgtcctcctcgcc 36359

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 174      gtagtcgtcgtcctcctcgcc 194
                |||||||||||||||||||||
Sbjct: 30596188 gtagtcgtcgtcctcctcgcc 30596208

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 181      tcgtcctcctcgccatcctcg 201
                |||||||||||||||||||||
Sbjct: 35401511 tcgtcctcctcgccatcctcg 35401491

>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1088C09
          Length = 154084

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   tcgtcctcctcgccatcctcg 201
             |||||||||||||||||||||
Sbjct: 25460 tcgtcctcctcgccatcctcg 25440

>dbj|AK108526.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-B09, full
           insert sequence
          Length = 792

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 181 tcgtcctcctcgccatcctcg 201
           |||||||||||||||||||||
Sbjct: 145 tcgtcctcctcgccatcctcg 165

>dbj|AK068519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156O10, full
            insert sequence
          Length = 1447

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  gtagtcgtcgtcctcctcgcc 194
            |||||||||||||||||||||
Sbjct: 1049 gtagtcgtcgtcctcctcgcc 1029

>ref|XM_474283.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 174 gtagtcgtcgtcctcctcgccatc 197
           ||||||| ||||||||||||||||
Sbjct: 507 gtagtcgccgtcctcctcgccatc 484

>ref|XM_382630.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02454.1)
           partial mRNA
          Length = 780

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 182 cgtcctcctcgccatcctcg 201
           ||||||||||||||||||||
Sbjct: 562 cgtcctcctcgccatcctcg 543

>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
             complete sequence
          Length = 190432

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 174   gtagtcgtcgtcctcctcgccatc 197
             ||||||| ||||||||||||||||
Sbjct: 88435 gtagtcgccgtcctcctcgccatc 88412

>dbj|AB220484.1| Macaca fascicularis mRNA, clone QmoA-14202: similar to Homo sapiens
            polymerase (RNA) III (DNA directed) polypeptide E (80kD)
            (POLR3E), mRNA, NM_018119.2
          Length = 2650

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 178  tcgtcgtcctcctcgccatcctcg 201
            ||||||||||||||||| ||||||
Sbjct: 1295 tcgtcgtcctcctcgccctcctcg 1272

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 174      gtagtcgtcgtcctcctcgccatc 197
                ||||||| ||||||||||||||||
Sbjct: 34177053 gtagtcgccgtcctcctcgccatc 34177030

>dbj|AK103305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125E07, full
           insert sequence
          Length = 1170

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 174 gtagtcgtcgtcctcctcgccatc 197
           ||||||| ||||||||||||||||
Sbjct: 687 gtagtcgccgtcctcctcgccatc 664

>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete
             sequence
          Length = 99356

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 174   gtagtcgtcgtcctcctcgccatc 197
             ||||||| ||||||||||||||||
Sbjct: 93365 gtagtcgccgtcctcctcgccatc 93342

>emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete
             sequence
          Length = 101125

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 174   gtagtcgtcgtcctcctcgccatc 197
             ||||||| ||||||||||||||||
Sbjct: 27735 gtagtcgccgtcctcctcgccatc 27712


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,185,304
Number of Sequences: 3902068
Number of extensions: 1185304
Number of successful extensions: 88556
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88330
Number of HSP's gapped (non-prelim): 226
length of query: 202
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 180
effective length of database: 17,147,199,772
effective search space: 3086495958960
effective search space used: 3086495958960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)