ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet63g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY617133.1| Leachiella pacifica isolate LeachPP2 18S ribosoma... 42 1.1
2dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 42 1.1
3emb|CR751544.12| Zebrafish DNA sequence from clone DKEYP-21D8 in... 40 4.5
4emb|AL357057.19| Human DNA sequence from clone RP11-802N13 on ch... 40 4.5
5emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on ch... 40 4.5
6gb|AC084262.6| Homo sapiens chromosome 8, clone RP4-676L2, compl... 40 4.5
7gb|AC024678.10| Homo sapiens chromosome 8, clone RP11-564K10, co... 40 4.5

>gb|AY617133.1| Leachiella pacifica isolate LeachPP2 18S ribosomal RNA gene,
           partial sequence
          Length = 2285

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 113 cggcaaaccaacaaaggccca 133
           |||||||||||||||||||||
Sbjct: 925 cggcaaaccaacaaaggccca 905



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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 140     aacaaagataaaatatcatcc 160
               |||||||||||||||||||||
Sbjct: 1099645 aacaaagataaaatatcatcc 1099665



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>emb|CR751544.12| Zebrafish DNA sequence from clone DKEYP-21D8 in linkage group 8,
             complete sequence
          Length = 72504

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   aacagaacaaagataaaata 154
             ||||||||||||||||||||
Sbjct: 45223 aacagaacaaagataaaata 45242



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>emb|AL357057.19| Human DNA sequence from clone RP11-802N13 on chromosome 6 Contains part
             of the CLIC5 gene for chloride intracellular channel 5,
             complete sequence
          Length = 58133

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   acggcaaaccaacaaaggcc 131
             ||||||||||||||||||||
Sbjct: 33422 acggcaaaccaacaaaggcc 33403



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>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete
              sequence
          Length = 166509

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    cagaacaaagataaaatatc 156
              ||||||||||||||||||||
Sbjct: 143038 cagaacaaagataaaatatc 143057



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>gb|AC084262.6| Homo sapiens chromosome 8, clone RP4-676L2, complete sequence
          Length = 127199

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    atattacgagtaatatcata 34
             ||||||||||||||||||||
Sbjct: 91597 atattacgagtaatatcata 91578



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    atattacgagtaatatcata 34
             ||||||||||||||||||||
Sbjct: 91531 atattacgagtaatatcata 91550



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    atattacgagtaatatcatacagt 38
             ||||||| ||||||||||||||||
Sbjct: 88859 atattacaagtaatatcatacagt 88836



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>gb|AC024678.10| Homo sapiens chromosome 8, clone RP11-564K10, complete sequence
          Length = 170788

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 15     atattacgagtaatatcatacagt 38
              ||||||| ||||||||||||||||
Sbjct: 164701 atattacaagtaatatcatacagt 164724



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     atattacgagtaatatcata 34
              ||||||||||||||||||||
Sbjct: 162029 atattacgagtaatatcata 162010



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     atattacgagtaatatcata 34
              ||||||||||||||||||||
Sbjct: 161963 atattacgagtaatatcata 161982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,402,055
Number of Sequences: 3902068
Number of extensions: 2402055
Number of successful extensions: 49738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49677
Number of HSP's gapped (non-prelim): 61
length of query: 338
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 316
effective length of database: 17,147,199,772
effective search space: 5418515127952
effective search space used: 5418515127952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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