>CYC3_DESVM (P00132) Cytochrome c3 precursor|
          Length = 130

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 29  KNKIQIRNRHAVHRRMRCTDPCRHPLNGLDQGEFSSRFACKRVLHPSYKSLSSSTRAAH 205
           K K  +   H+ H+ ++C D C HP+NG +  +  +   C   +    KS      A H
Sbjct: 36  KTKQPVVFNHSTHKAVKCGD-CHHPVNGKEDYQKCATAGCHDNMDKKDKSAKGYYHAMH 93

>TSC1_RAT (Q9Z136) Hamartin (Tuberous sclerosis 1 protein homolog)|
          Length = 1163

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
 Frame = +1

Query: 10  DKTISWQKQNPNQEQARG-----------TQTHALHRSLSPSPERIRSRGIQFEIRLQTC 156
           +K I   K +  +EQAR            TQ H+  R L    E   ++  + + +L+ C
Sbjct: 744 EKDIQMWKVSLQKEQARYSQLQQQRDTMVTQLHSQIRQLQHDREEFYNQSQELQTKLEDC 803

Query: 157 SS--SKLQVIIQQYKSSTCHQQLI 222
            S  ++L+V +++  S  CH +L+
Sbjct: 804 RSMIAELRVELKKANSKVCHTELL 827

>GLIS3_MOUSE (Q6XP49) Zinc finger protein GLIS3 (GLI-similar 3)|
          Length = 780

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 117 IKGNSVRDSLANVFFIQATSHYPAVQEQHMPSAADKAYETNSNKR 251
           + GNSV +SL    F    SH P    +H   +A +A+ T S KR
Sbjct: 106 VSGNSVSNSLPPYLFGMENSHSPYPSPRH---SATRAHSTRSKKR 147

>SEMG2_MACNE (Q5U7M9) Semenogelin-2 precursor (Semenogelin II) (SGII)|
          Length = 582

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 19/124 (15%)
 Frame = +1

Query: 34  QNPNQEQARGTQTHALHRSLSPSPERIRSRGIQFEI---------RLQTCSSS------- 165
           QNP+Q+Q        + R  S + +R+   G+  E          R Q  S S       
Sbjct: 140 QNPSQDQGNSPSGKGIFRQYSNTEKRLWVHGLSKEQASASGAQKGRTQGGSQSSYVLQTE 199

Query: 166 KLQVIIQQYKSSTCHQQLIRLTRRIQIKGTF---LT*QGHPQEQDIISNGPKLLHADSNT 336
           +L V  QQ ++   HQ        + ++      L    HP  QD + +GPK +    + 
Sbjct: 200 ELVVNKQQLETKNSHQNKGHYQNVVDVREEHSGKLQTSLHPAHQDRLQHGPKDIFTTQDE 259

Query: 337 CLVH 348
            LV+
Sbjct: 260 LLVY 263

>CISY5_ARATH (Q9M1D3) Citrate synthase 5, mitochondrial precursor (EC 2.3.3.1)|
          Length = 433

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 372 GEALVEPYMDQAGITVSMQ-QLGTIANNVLFLWVSLLCQEC 253
           G AL +PY+  A     +   L  +AN  + LW+ L+ +EC
Sbjct: 247 GSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKLVVEEC 287

>CLD22_MOUSE (Q9D7U6) Claudin-22|
          Length = 220

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 338 QVLLSACNSLGPLLIMSCSCGCPC 267
           +VL+S CN LG L +++  CG  C
Sbjct: 81  RVLMSLCNGLGLLGLLASGCGLDC 104

>STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form stabilin-2]|
          Length = 2559

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 125  PLDLIRSGDGDRDLCSACVCVPRACS*FGFCFCQ 24
            PL   R  +G ++LC+  V VPR CS +    CQ
Sbjct: 1935 PLPFRRDVEGCQNLCTLVVHVPRCCSGYFMPDCQ 1968

>STAR9_HUMAN (Q9P2P6) StAR-related lipid transfer protein 9 (StARD9) (START|
           domain-containing protein 9) (Fragment)
          Length = 1820

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
 Frame = +2

Query: 89  PCRHPLNGLDQGEFSSRFACKRVLHPS----------YKSLSSSTRAAHAISS 217
           PCRHP   LD   FS      R L PS           +  SS   A HA SS
Sbjct: 37  PCRHPREALDGPVFSRNPEGSRTLSPSRGKESRTLPCRQPCSSQPVATHAYSS 89

>SEMG2_HUMAN (Q02383) Semenogelin-2 precursor (Semenogelin II) (SGII)|
          Length = 582

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 19/124 (15%)
 Frame = +1

Query: 34  QNPNQEQARGTQTHALHRSLSPSPERIRSRGIQFEI---------RLQTCSSS------- 165
           QNP+Q+Q        L    S + +R+   G+  E          R Q  S S       
Sbjct: 140 QNPSQDQGNSPSGKGLSSQCSNTEKRLWVHGLSKEQASASGAQKGRTQGGSQSSYVLQTE 199

Query: 166 KLQVIIQQYKSSTCHQQLIRLTRRIQIK---GTFLT*QGHPQEQDIISNGPKLLHADSNT 336
           +L V  QQ ++   HQ        + ++    + L    HP  QD + +GPK +    + 
Sbjct: 200 ELVVNKQQRETKNSHQNKGHYQNVVDVREEHSSKLQTSLHPAHQDRLQHGPKDIFTTQDE 259

Query: 337 CLVH 348
            LV+
Sbjct: 260 LLVY 263

>EGFR_HUMAN (P00533) Epidermal growth factor receptor precursor (EC 2.7.10.1)|
           (Receptor tyrosine-protein kinase ErbB-1)
          Length = 1210

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +2

Query: 62  VHRRMRCTDPCRHPLNGLDQGEFSSRFACKRVLHPSYKSLSSSTRAAHAI 211
           V +  +C  PCR   NG+  GEF    +        +K+ +S +   H +
Sbjct: 323 VRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHIL 372

>NODS_RHISN (P19441) Nodulation protein S (EC 2.1.1.-)|
          Length = 216

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 32  NKIQIRNRHAVHRRMRCTDPCRHPLNGLDQGEFS 133
           N  Q+ N H +HR +   DP R   N  +Q   S
Sbjct: 16  NLTQVNNYHLLHRELAAEDPWRLDANAFEQERHS 49

>SNUT3_HUMAN (Q8WVK2) U4/U6.U5 tri-snRNP-associated protein 3 (U4/U6.U5|
           tri-snRNP-associated 27 kDa protein) (27K) (Nucleic
           acid-binding protein RY-1)
          Length = 155

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +1

Query: 28  QKQNPNQEQARGTQTHALHRSLSPSPERIRSRGIQFEIRLQTCSSSKLQVIIQQYKSST 204
           + ++P++ ++R  + H   RS SPSP R++ R  + +   +   S + Q+  +  +  T
Sbjct: 42  RSRSPHRRRSRSPRRH---RSTSPSPSRLKERRDEEKKETKETKSKERQITEEDLEGKT 97

>FBLN4_HUMAN (O95967) EGF-containing fibulin-like extracellular matrix protein 2|
           precursor (Fibulin-4) (FIBL-4) (UPH1 protein)
          Length = 443

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 129 SVRDSLANVFFIQATSHYP----AVQEQHMPSAADKAYETNSNKRDILDITRTPTGTRHY 296
           S R   A+VF IQATS YP    A Q +   S  D      +N   +L + R  TG R Y
Sbjct: 352 SERSVPADVFQIQATSVYPGAYNAFQIRAGNSQGDFYIRQINNVSAMLVLARPVTGPREY 411

>SEMG2_PANTR (Q5U7N4) Semenogelin-2 precursor (Semenogelin II) (SGII)|
          Length = 407

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 19/124 (15%)
 Frame = +1

Query: 34  QNPNQEQARGTQTHALHRSLSPSPERIRSRGIQFEI---------RLQTCSSS------- 165
           QNP+Q+Q        L    S + +R+   G+  E          R Q  S S       
Sbjct: 140 QNPSQDQGNSPSGKGLSSQYSNTEKRLWVHGLSKEQASASGAQKGRTQGGSQSSYVLQTE 199

Query: 166 KLQVIIQQYKSSTCHQQLIRLTRRIQIKGTF---LT*QGHPQEQDIISNGPKLLHADSNT 336
           +L V  QQ ++   HQ        + ++      L    HP  QD + +GPK +    + 
Sbjct: 200 ELVVNKQQLETKNSHQNKGHYQNVVDVREEHSGKLQTSLHPAHQDRLQHGPKDIFTTQDE 259

Query: 337 CLVH 348
            LV+
Sbjct: 260 LLVY 263

>GLUQ_RALSO (Q8XXA6) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)|
          Length = 315

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 108 TD*IKGNSVRDSLANVFFIQATSHYPAVQEQHMPSAADKAYETNSNKRDILDITRT 275
           TD ++G  + DS     ++Q     PAV+  H+P   + A E  S +     I R+
Sbjct: 216 TDVVRGADLLDSTPRQIYLQRLLGLPAVRYLHVPVVVNAAGEKLSKQTGARAINRS 271

>ARFG1_RAT (Q62848) ADP-ribosylation factor GTPase-activating protein 1|
           (ADP-ribosylation factor 1 GTPase-activating protein)
           (ARF1 GAP) (ARF1-directed GTPase-activating protein)
           (GAP protein)
          Length = 415

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 162 IQATSHYPAVQEQHMPSAADKAYE 233
           +Q T+H PA Q Q++ ++ DKA+E
Sbjct: 142 LQFTAHRPAGQPQNVTTSGDKAFE 165

>YU61_VIBMA (Q9RA11) UPF0061 protein ORF18|
          Length = 557

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 345 DQAGITVSMQQLGTIANNVLFLWVSLLCQECPF 247
           D +G+ V M+Q+G  +   L ++ +   Q+CPF
Sbjct: 62  DMSGVPVPMRQVGWASGYALSIYGTEYTQQCPF 94

>TSP4_BRARE (Q8JGW0) Thrombospondin-4 precursor (Thbs4)|
          Length = 949

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 149 CKRISN*IPLDLIRSGDGDRDLCSACVCVP 60
           C+R+ N   LD  R GDG  D C +C  +P
Sbjct: 571 CQRVKNRDQLD--RDGDGVGDACDSCPDIP 598

>KAD2_RAT (P29410) Adenylate kinase isoenzyme 2, mitochondrial (EC 2.7.4.3)|
           (ATP-AMP transphosphorylase)
          Length = 238

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +1

Query: 31  KQNPNQEQARGTQTHALHRSLSPSPERIRSRGIQFEIRLQTCSSSKLQVIIQQYKSSTC 207
           +++ + E+A  T+  A H   +P  E  R RGI   I            I+  +  +TC
Sbjct: 173 RRSDDNEKALKTRLEAYHTQTTPLVEYYRKRGIHCAIDASQTPDVVFASILAAFSKATC 231

>VE2_HPV21 (P50767) Regulatory protein E2|
          Length = 503

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 34  QNPNQEQARGTQTHALHRSLSPSPERIRSRGIQFEIRLQTCSSSK 168
           + P+    R TQTH   RS S S  R RSR      RL++ S S+
Sbjct: 249 RRPSSRTRRTTQTHQRRRSRSKSRSRSRSRS-----RLRSRSRSR 288

>U2AFL_HUMAN (Q15695) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit-related protein 1 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 1)
          Length = 479

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 49  EQARGTQTHALHRSLSPSPERIRSRG 126
           +Q R +Q+   HRS S S  R RSRG
Sbjct: 437 DQGRRSQSRRSHRSRSQSSSRCRSRG 462

>AAC3_DICDI (P14197) AAC-rich mRNA clone AAC3 protein (Fragment)|
          Length = 437

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 28  QKQNPNQEQARGTQTHALHRSL-SPSPERIRSRGIQFEIRLQTCSSSKLQVIIQQYKSST 204
           Q+Q   Q+Q + TQ   LH  L     ++I+ +    +  LQT          QQY  S 
Sbjct: 17  QQQQQQQQQQQQTQVQQLHNQLHQQHNQQIQQQAQATQQHLQT----------QQYLQSQ 66

Query: 205 CHQQ 216
            HQQ
Sbjct: 67  IHQQ 70

>SEMG2_HYLKL (Q6X2M3) Semenogelin-2 precursor (Semenogelin II) (SGII)|
          Length = 522

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 28  QKQNPNQEQARGTQTHALHRSLSPSPERIRSRG 126
           Q +N NQ+Q  G +TH +    S + ER  +RG
Sbjct: 269 QTKNLNQDQEHGQKTHKISYQSSRTEERQLNRG 301

>AGAL2_PEDPE (P43469) Alpha-galactosidase 2 (EC 3.2.1.22) (Melibiase)|
          Length = 719

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 91  LSPSPERIRSRGIQFEIRLQTCSSSKLQVIIQQYKSSTCHQQLIR--LTRRIQIKGTFL 261
           ++ SP     R   FE RLQ     +L + +   + +   QQL+R  L +  Q+K TF+
Sbjct: 569 ITASPNAQNGRITPFETRLQLACIGQLGLELNPKQLAPSEQQLLRGALIKYQQLKSTFI 627


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,000,800
Number of Sequences: 219361
Number of extensions: 1277101
Number of successful extensions: 3548
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3543
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)