Clone Information

BLAST Search Result

Clone Name	rbaet63g04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase ...	166	2e-41
2	RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase ...	141	3e-34
3	RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase a...	139	2e-33
4	RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase a...	138	3e-33
5	RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase a...	137	6e-33
6	RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase ...	132	3e-31
7	RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase ...	129	1e-30
8	RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase a...	127	8e-30
9	RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase a...	127	8e-30
10	RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase a...	124	4e-29
11	RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase a...	122	2e-28
12	RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase ...	121	3e-28
13	RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase a...	117	5e-27
14	RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase ...	116	1e-26
15	RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase a...	89	3e-18
16	RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase a...	62	4e-10
17	RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase a...	59	2e-09
18	RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase a...	54	9e-08
19	RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase a...	35	0.056
20	ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (I...	32	0.36
21	ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0	32	0.36
22	IF2_COREF (Q8FPA7) Translation initiation factor IF-2	32	0.48
23	DNAA_STRAW (Q82FD8) Chromosomal replication initiator protein dnaA	29	2.4
24	UL95_HCMVA (P16801) Protein UL95	28	4.0
25	CUTL1_CANFA (P39881) Homeobox protein cut-like 1 (CCAAT displace...	28	4.0
26	41_CANFA (Q6Q7P4) Protein 4.1 (Band 4.1) (P4.1) (4.1R)	28	4.0
27	ODO1_STAS1 (Q49XM5) 2-oxoglutarate dehydrogenase E1 component (E...	28	4.0
28	H1X_HUMAN (Q92522) Histone H1x	28	4.0
29	RNF31_MOUSE (Q924T7) RING finger protein 31	28	5.3
30	GANAB_PIG (P79403) Neutral alpha-glucosidase AB precursor (EC 3....	28	5.3
31	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	28	5.3
32	MYOB_DICDI (P34092) Myosin IB heavy chain	28	5.3
33	IF2_CHRVO (Q7NY13) Translation initiation factor IF-2	28	5.3
34	M4K4_HUMAN (O95819) Mitogen-activated protein kinase kinase kina...	28	6.9
35	MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127)	28	6.9
36	ASB16_HUMAN (Q96NS5) Ankyrin repeat and SOCS box protein 16 (ASB...	28	6.9
37	PETP_RHOCA (P31078) HTH-type transcriptional regulator petP	28	6.9
38	RHAT_ERWCT (Q6DA13) L-rhamnose-proton symporter (L-rhamnose-H(+)...	27	9.0
39	SNUT1_HUMAN (O43290) U4/U6.U5 tri-snRNP-associated protein 1 (U4...	27	9.0
40	IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2	27	9.0
41	VNUA_PRVKA (P33485) Probable nuclear antigen	27	9.0
42	MAGI2_HUMAN (Q86UL8) Membrane-associated guanylate kinase, WW an...	27	9.0

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  166 bits (419), Expect = 2e-41
 Identities = 81/81 (100%), Positives = 81/81 (100%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL
Sbjct: 345 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 404

Query: 218 SEAALGQANDDAMKTGAFYGK 156
           SEAALGQANDDAMKTGAFYGK
Sbjct: 405 SEAALGQANDDAMKTGAFYGK 425

to top

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  141 bits (356), Expect = 3e-34
 Identities = 65/81 (80%), Positives = 74/81 (91%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKWVG  G+ENI KRLVNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+
Sbjct: 348 RKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407

Query: 218 SEAALGQANDDAMKTGAFYGK 156
           S+AALG AN DAMKTG+FYGK
Sbjct: 408 SQAALGDANQDAMKTGSFYGK 428

to top

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  139 bits (350), Expect = 2e-33
 Identities = 66/80 (82%), Positives = 74/80 (92%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKWV + GVENI KRLVNSREGPP F+QPKMTIEKL+EYG+MLV+EQENVKRVQLA++YL
Sbjct: 348 RKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYL 407

Query: 218 SEAALGQANDDAMKTGAFYG 159
           SEAALG AN DAMKTG+FYG
Sbjct: 408 SEAALGDANSDAMKTGSFYG 427

to top

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  138 bits (348), Expect = 3e-33
 Identities = 63/79 (79%), Positives = 76/79 (96%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           R+WV E GVENI+++LVNS+EGPPTF+QPK+TIEKL+EYGHMLV EQENVKRVQLADKYL
Sbjct: 354 RRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYL 413

Query: 218 SEAALGQANDDAMKTGAFY 162
           +EAALG+AN+DAMKTG+F+
Sbjct: 414 NEAALGEANEDAMKTGSFF 432

to top

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  137 bits (345), Expect = 6e-33
 Identities = 64/80 (80%), Positives = 73/80 (91%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKW+  +GV++I K+LVNS+EGPPTF+QPKMTIEKL+EYG+MLVQEQENVKRVQLADKYL
Sbjct: 358 RKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 417

Query: 218 SEAALGQANDDAMKTGAFYG 159
           SEAALG AN DAM TG FYG
Sbjct: 418 SEAALGDANSDAMNTGTFYG 437

to top

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  132 bits (331), Expect = 3e-31
 Identities = 61/80 (76%), Positives = 72/80 (90%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKWV E+GV+ I K+LVNS+EGPP+F+QPKMTI+KL+ YG MLVQEQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 417

Query: 218 SEAALGQANDDAMKTGAFYG 159
           SEAALG AN+DA+K G FYG
Sbjct: 418 SEAALGDANNDAIKRGTFYG 437

to top

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  129 bits (325), Expect = 1e-30
 Identities = 59/78 (75%), Positives = 71/78 (91%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKWV E+GV+ I K+LVNS+EGPPTF+QPKMTI+KL++YG+MLV+EQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 417

Query: 218 SEAALGQANDDAMKTGAF 165
           SEAALG AN DA+K G F
Sbjct: 418 SEAALGDANQDAIKRGTF 435

to top

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  127 bits (318), Expect = 8e-30
 Identities = 56/79 (70%), Positives = 73/79 (92%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKW+  +GV+   K+LVNS+EGPPTFDQPKM+++KL++YG+MLVQEQENVKRVQLADKYL
Sbjct: 360 RKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYL 419

Query: 218 SEAALGQANDDAMKTGAFY 162
           +EAALG AN+DA+K+G+F+
Sbjct: 420 NEAALGNANEDAIKSGSFF 438

to top

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  127 bits (318), Expect = 8e-30
 Identities = 56/81 (69%), Positives = 71/81 (87%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKWV  +GV+N+ K+LVNS++GPP F+QP+MT++KLMEYG+MLVQEQENVKRVQLAD+Y+
Sbjct: 356 RKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYM 415

Query: 218 SEAALGQANDDAMKTGAFYGK 156
           S AALG AN DA+  G F+GK
Sbjct: 416 SSAALGDANKDAIDRGTFFGK 436

to top

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  124 bits (312), Expect = 4e-29
 Identities = 55/79 (69%), Positives = 72/79 (91%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKW+  +GV+++ K+LVNS+EGPPTFDQPKMT++KL+ Y  MLVQEQENVKRVQLAD+YL
Sbjct: 362 RKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYL 421

Query: 218 SEAALGQANDDAMKTGAFY 162
           +EAALG AN+DA+K+G+F+
Sbjct: 422 NEAALGNANEDAIKSGSFF 440

to top

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  122 bits (307), Expect = 2e-28
 Identities = 60/81 (74%), Positives = 68/81 (83%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RK+V  +GVE I KRLVNSREGPP F+QP+MT EKLMEYG+MLV EQENVKRVQLA+ YL
Sbjct: 358 RKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417

Query: 218 SEAALGQANDDAMKTGAFYGK 156
           S+AALG AN DA+  G FYGK
Sbjct: 418 SQAALGDANADAIGRGTFYGK 438

to top

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  121 bits (304), Expect = 3e-28
 Identities = 57/79 (72%), Positives = 67/79 (84%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKWV   G+E I  +L+NS +GPPTF+QPKMTIEKL+EYG+MLVQEQENVKRVQLADKYL
Sbjct: 362 RKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 421

Query: 218 SEAALGQANDDAMKTGAFY 162
            EAALG AN DA+  G+F+
Sbjct: 422 KEAALGDANADAINNGSFF 440

to top

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  117 bits (294), Expect = 5e-27
 Identities = 55/76 (72%), Positives = 66/76 (86%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKWV   G+E I ++L+NSR+GPPTF+QPKMT+EKL+EYG+MLVQEQENVKRVQLA+ YL
Sbjct: 357 RKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYL 416

Query: 218 SEAALGQANDDAMKTG 171
            EAALG AN DA+ TG
Sbjct: 417 KEAALGDANADAINTG 432

to top

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  116 bits (290), Expect = 1e-26
 Identities = 55/78 (70%), Positives = 65/78 (83%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           RKWV   G+E I  +L+NS +GPPTF+QPKMT+EKL+EYG+MLVQEQENVKRVQLA+ YL
Sbjct: 362 RKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYL 421

Query: 218 SEAALGQANDDAMKTGAF 165
            EAALG AN DA+ TG F
Sbjct: 422 KEAALGDANADAINTGNF 439

to top

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQL 234
           RKW   +GVE I + LVNS+E PPTFDQPKMTIEKL+EYG+MLV EQENVKRV+L
Sbjct: 355 RKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409

to top

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 61.6 bits (148), Expect = 4e-10
 Identities = 32/65 (49%), Positives = 44/65 (67%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 219
           R+W+ + GV+ I ++LVN+R+      +  M +  L++YG  LV EQENVKRVQLAD YL
Sbjct: 331 RQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYL 389

Query: 218 SEAAL 204
           S A L
Sbjct: 390 SGAEL 394

to top

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 25/59 (42%), Positives = 40/59 (67%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKY 222
           R ++ ++G EN+S R+VNS EGPP F +P  T+  L+E  + +V EQ+ ++  QL D+Y
Sbjct: 231 RDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289

to top

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 53.9 bits (128), Expect = 9e-08
 Identities = 24/59 (40%), Positives = 39/59 (66%)
 Frame = -3

Query: 398 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKY 222
           R ++ ++G E IS R+VNS E PP F +P  ++  L+E G++++ EQ+ V   QL D+Y
Sbjct: 231 RDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289

to top

>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 34.7 bits (78), Expect = 0.056
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -3

Query: 341 REGPPTFDQPKMTIEK 294
           REGPPTF+QP MTIEK
Sbjct: 17  REGPPTFEQPAMTIEK 32

to top

>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell|
           protein 0)
          Length = 532

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 360 QAPRQLQGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQ 217
           QAPRQ     A  RP         G RP A PG   R++   RR+ P+
Sbjct: 250 QAPRQEDSRPARARPGPPTRGRRRGRRP-AAPGPASRRSARLRRRQPR 296

to top

>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0|
          Length = 532

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 360 QAPRQLQGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQ 217
           QAPRQ     A  RP         G RP A PG   R++   RR+ P+
Sbjct: 250 QAPRQEDSRPARARPGPPTRGRRRGRRP-AAPGPASRRSARLRRRQPR 296

to top

>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 24/63 (38%), Positives = 27/63 (42%)
 Frame = -2

Query: 384 RDRRGEHLQAPRQLQGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQRGGA 205
           R + G+   APR  QGG    RP       + G RP  G  AG      A  Q  Q GG 
Sbjct: 221 RPQGGQRSGAPRDGQGGPRGQRPGPG----SGGPRPQGGNAAG------AASQERQGGGR 270

Query: 204 RPS 196
           RPS
Sbjct: 271 RPS 273

to top

>DNAA_STRAW (Q82FD8) Chromosomal replication initiator protein dnaA|
          Length = 653

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = -2

Query: 351 RQLQGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQRGGARPSQRRRHED 175
           R  +G   + R   DDHR+ H  R   GPG          +  P RG   P+ R  + D
Sbjct: 125 RGREGYEGYGRHRADDHRQGHNDRHQGGPG---------DQLPPSRGDQLPTARPAYPD 174

to top

>UL95_HCMVA (P16801) Protein UL95|
          Length = 531

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -2

Query: 264 GAGERQACAARRQVPQRGGARPSQRRRHE--DRCLLRQVEGPTL-LKMHAC-TIYMLDYF 97
           G G R     RR+ P+   A PS  RRH+  +R        P+L ++ +A      + Y 
Sbjct: 198 GGGSRAKRRRRRRAPKNDAATPSFLRRHDVLERFAAAAKPLPSLCVRDYALRNADRVTYD 257

Query: 96  GPEIHSNFLIYRR 58
           G  I+ ++L+YR+
Sbjct: 258 GELIYGSYLLYRK 270

to top

>CUTL1_CANFA (P39881) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP) (Homeobox protein Clox) (Clox-1) (Fragment)
          Length = 975

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 18/91 (19%)
 Frame = -2

Query: 390  GRRDRRGEHLQAPRQLQGGAAHVRPAQDDHREA------HGVRPHA-GPGAGERQA---- 244
            G  D       A  + QGG A    A ++  EA         RP   GPG G R      
Sbjct: 788  GAADAEESAPAAAAKSQGGPAEAAVAPEEREEAPRPAEKRSRRPRGPGPGPGRRGGGGPA 847

Query: 243  -------CAARRQVPQRGGARPSQRRRHEDR 172
                    AA R   +R GAR   RRR   R
Sbjct: 848  PGAPAAPAAAARGPSRRPGARAKPRRRRRRR 878



 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
 Frame = -2

Query: 387 RRDRRGEHLQAPRQLQGGAAHVRPAQD-------DHREAHGVRPHAGPGAGERQACAARR 229
           RR+   E +QA  Q Q GA H   A+        +     GV    GPGA + +  A   
Sbjct: 740 RRELFIEEIQAGSQGQAGARHSPSARSSGAAPSSEGDSCDGVEAAEGPGAADAEESAPAA 799

Query: 228 QVPQRGG 208
               +GG
Sbjct: 800 AAKSQGG 806

to top

>41_CANFA (Q6Q7P4) Protein 4.1 (Band 4.1) (P4.1) (4.1R)|
          Length = 810

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
 Frame = -2

Query: 333 AAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQRGGAR---PSQR--RRHED-- 175
           +A  +PAQ++HRE        G G  E      + + P+    R    SQ+  RRH +  
Sbjct: 153 SAETQPAQEEHREDPDFETKEGGGLEECSKIEVKEESPESKAERELKASQKSIRRHRNMH 212

Query: 174 -----------RCLL-RQVEGPTLLKMHACTIYML--DYFGPEIHSN 76
                       C++ +  +G  LLK     + +L  DYFG  I  N
Sbjct: 213 CKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDN 259

to top

>ODO1_STAS1 (Q49XM5) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
           (Alpha-ketoglutarate dehydrogenase)
          Length = 933

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = -3

Query: 386 GEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQ-------EQENVKRVQLAD 228
           GE  +   ++   N  +G  T  +    I+ + +YGH+L         ++ENV ++ + D
Sbjct: 49  GEANIATNTEGQSNVTKGDSTIKRVMRLIDNIRQYGHLLADIYPVNRPQRENVPKLNMED 108

Query: 227 KYLSEAAL 204
             L +  L
Sbjct: 109 FNLDQETL 116

to top

>H1X_HUMAN (Q92522) Histone H1x|
          Length = 213

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 66  KSKSLSGFRVQNSPTYI*CMHAS*VE*DLLLAVKGTGLHG 185
           ++K +  F  QN  TY+     + V+ D LL VKGTG +G
Sbjct: 73  EAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANG 112

to top

>RNF31_MOUSE (Q924T7) RING finger protein 31|
          Length = 1066

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 318 VERGRPLPGVDEALGDVLHADLADP 392
           +E+GRP PG  + LG  L A   DP
Sbjct: 446 LEKGRPKPGSSQHLGSSLPASCGDP 470

to top

>GANAB_PIG (P79403) Neutral alpha-glucosidase AB precursor (EC 3.2.1.84)|
           (Glucosidase II alpha subunit)
          Length = 944

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 2/110 (1%)
 Frame = -2

Query: 369 EHLQAPRQLQGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQRGGARPSQR 190
           EH +APR  QG          D  E  G +P   PG G++      +      GA     
Sbjct: 179 EHQRAPRVSQGSK--------DPAEGDGAQPEEAPGDGDKPEEIQGKAEKDEPGAWEETF 230

Query: 189 RRHEDRCLLRQVEGPTLLKMHACTIYMLDYFGPEIHSNFLIYRRT--GNP 46
           + H D     +  GPT + +      M   +G   H++ L  + T  G+P
Sbjct: 231 KTHSD----SKPYGPTSVGLDFSLPGMEHVYGIPEHADSLRLKVTEGGDP 276

to top

>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 288 GVRPHAGPGAGERQACAARRQVPQRGGARPSQRRRHEDRCLLRQVEGP 145
           G +P  GPG G   A     + P RGG  P   R+H      +  +GP
Sbjct: 207 GPKPGGGPGMG---APGGHPKPPHRGGGEPRGGRQHHAPYHQQHHQGP 251

to top

>MYOB_DICDI (P34092) Myosin IB heavy chain|
          Length = 1111

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -2

Query: 354  PRQLQGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVP---QRGGA 205
            P+  QGG A   P     ++  G RP   P  G      A RQ+P   Q+GGA
Sbjct: 969  PQPQQGGGARPMPQP---QQGGGARPMGAPQQGGAPQQGAGRQLPQPTQQGGA 1018

to top

>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2|
          Length = 964

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
 Frame = -2

Query: 387 RRDRRGEHLQAPRQLQGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAA----RRQVP 220
           R  R G   + PR    G    RP  D+     G RP      G R A AA    +   P
Sbjct: 261 RGPRPGGDNRGPRPAGAGDRGPRPGGDNR----GPRPAGAGDRGPRPAPAAAAPSQPPAP 316

Query: 219 QRGGARPSQRRRHEDR 172
             GG+RP + ++  +R
Sbjct: 317 APGGSRPGKGKKGGER 332

to top

>M4K4_HUMAN (O95819) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1239

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -2

Query: 378 RRGEHLQAPRQLQGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQRGGARP 199
           R+ E LQ  RQLQ   A++   Q DHR  H       P   + ++  +      +    P
Sbjct: 505 RQAERLQ--RQLQQEQAYLLSLQHDHRRPHPQHSQQPPPPQQERSKPSFHAPEPKAHYEP 562

Query: 198 SQRRRH-EDR 172
           + R R  EDR
Sbjct: 563 ADRAREVEDR 572

to top

>MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127)|
          Length = 544

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -2

Query: 399 AQVGRRDRRGEHLQAPRQLQGGAAHVRPAQDDHREAHGVRPH-AGPGAGERQACAARRQV 223
           A+ G     G  +  P Q +   A    +    ++A G+ P    PG   R+A + R   
Sbjct: 16  AEAGAEGGEGVSVPPPPQFEAAGASAGVSSAPLQQASGLAPLLVTPGPAIRRAASLRPAP 75

Query: 222 PQRGGARPSQRR 187
            + GGAR    R
Sbjct: 76  AEGGGARSGPER 87

to top

>ASB16_HUMAN (Q96NS5) Ankyrin repeat and SOCS box protein 16 (ASB-16)|
          Length = 453

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 270 GPGAGERQACAARRQVPQRGGARPSQRRRH 181
           GPG+  R   AARR +     AR + R+RH
Sbjct: 256 GPGSCRRHQAAARRLLEAGADARAAGRKRH 285

to top

>PETP_RHOCA (P31078) HTH-type transcriptional regulator petP|
          Length = 166

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 26/74 (35%), Positives = 35/74 (47%)
 Frame = -2

Query: 399 AQVGRRDRRGEHLQAPRQLQGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVP 220
           ++VGRRD+R  HL    +   GA   R    +  EA  VR  A   A   QA A  RQV 
Sbjct: 95  SRVGRRDKRERHLHLTEK---GAVLER----ELSEAQRVRMPAAYRAAGPQAVAGFRQVL 147

Query: 219 QRGGARPSQRRRHE 178
           +     P+ RR ++
Sbjct: 148 E-AMMDPAMRRHYQ 160

to top

>RHAT_ERWCT (Q6DA13) L-rhamnose-proton symporter (L-rhamnose-H(+) transport|
           protein)
          Length = 344

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +1

Query: 229 SASCTRLTF----SCSWTSMWPYSMSFSMVILGWS 321
           SA+C    F    + SW +MW     FS +IL WS
Sbjct: 18  SAACFYAPFKQVKNWSWETMWSLGGFFSWIILPWS 52

to top

>SNUT1_HUMAN (O43290) U4/U6.U5 tri-snRNP-associated protein 1 (U4/U6.U5|
           tri-snRNP-associated 110 kDa protein) (Squamous cell
           carcinoma antigen recognized by T cells 1) (SART-1)
           (hSART-1) (hSnu66)
          Length = 800

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -2

Query: 339 GGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQRGGARPSQRRRHE 178
           GGA    P   +H++       +G   GER     R++  +RGG R S RR  E
Sbjct: 23  GGATEQPPRHREHKKHKHRSGGSGGSGGER-----RKRSRERGGERGSGRRGAE 71

to top

>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = -2

Query: 378 RRGEHLQAPRQLQGGAAHVRPAQDDHREAHGVRPHAGPGAGERQACAARRQVPQRGGARP 199
           ++G H   P  +       RP  D+ R     RP  G G G R     R     +GG RP
Sbjct: 197 KQGMHTPTPGDIPRPHPMARPTADNGRGGRPGRPGQGQGQG-RGFRGGRPGQGGQGGPRP 255

Query: 198 SQ 193
            Q
Sbjct: 256 GQ 257

to top

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -2

Query: 306 DHREAH----GVRPHAGPGAGERQACAARRQVPQRGGARPSQRRRHE 178
           +H  AH    G  PH G  A ER A AAR  V Q GG    +RR  E
Sbjct: 778 EHHHAHVLGVGYLPHPGGAAAERGA-AARGDVRQ-GGRVEGERRAPE 822

to top

>MAGI2_HUMAN (Q86UL8) Membrane-associated guanylate kinase, WW and PDZ|
            domain-containing protein 2 (Membrane-associated
            guanylate kinase inverted 2) (MAGI-2)
            (Atrophin-1-interacting protein 1)
            (Atrophin-1-interacting protein A)
          Length = 1455

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -2

Query: 300  REAHGVRP-HAGPGAGERQACAARRQVPQRGGARPSQR 190
            RE  G  P  AGPG G   A  A  +   R G RP  R
Sbjct: 1380 REGPGAAPAFAGPGGGGSGALEAEGRAGARAGPRPGPR 1417


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,144,939
Number of Sequences: 219361
Number of extensions: 1025113
Number of successful extensions: 3350
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3339
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result