ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet63e02 |
|---|---|
| Clone Library Name | barley_pub |
>LAMA_DROME (Q00174) Laminin alpha chain precursor| Length = 3712 Score = 32.3 bits (72), Expect = 0.48 Identities = 18/57 (31%), Positives = 23/57 (40%) Frame = -2 Query: 197 CSRSKEMSFERPEGVSCNL*DAPVLPILFPKPGCGAVVMHRQCRCVHLRRGEHCNSC 27 C KE + P CN A V+ GCG+V + C+C G CN C Sbjct: 661 CDSCKEGFYNFPSCEDCNCDPAGVIDKF---AGCGSVPVGELCKCKERVTGRICNEC 714
>VN53_ROTSP (P35425) Nonstructural RNA-binding protein 53 (NS53) (NCVP2)| Length = 495 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/75 (20%), Positives = 32/75 (42%) Frame = +2 Query: 155 HLQAFQMTFPWTLNKTYNIASAFRPSAILQNI*TSVHHSNRTLVFPTVEKAIWSVRLQES 334 +++ F W + YN+ F N+ H S+ ++P +++ IWS+ Sbjct: 328 NIKYFLSKIDWRIRDMYNLLMEFIKDCYKSNVNVG-HCSSVENIYPLIKRLIWSLFTNHM 386 Query: 335 NEPVTGVLPFSGPIS 379 ++ + V P+S Sbjct: 387 DQTIEEVFNHMSPVS 401
>VN53_ROTS1 (P15687) Nonstructural RNA-binding protein 53 (NS53) (NCVP2)| Length = 495 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/75 (20%), Positives = 32/75 (42%) Frame = +2 Query: 155 HLQAFQMTFPWTLNKTYNIASAFRPSAILQNI*TSVHHSNRTLVFPTVEKAIWSVRLQES 334 +++ F W + YN+ F N+ H S+ ++P +++ IWS+ Sbjct: 328 NIKYFLSKIDWRIRDMYNLLMEFIKDCYKSNVNVG-HCSSVENIYPLIKRLIWSLFTNHM 386 Query: 335 NEPVTGVLPFSGPIS 379 ++ + V P+S Sbjct: 387 DQTIEEVFNHMSPVS 401
>NADE_BACHD (Q9KAK2) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)| Length = 272 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -3 Query: 415 SPLR*RLAQMALRDWTREGQDTCYRFIGFLEPY 317 S L +LAQMA+ + E QDT Y FI PY Sbjct: 50 STLAGKLAQMAIDELNEEEQDTSYVFIAVRLPY 82
>PI51C_HUMAN (O60331) Phosphatidylinositol-4-phosphate 5-kinase type-1 gamma (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type I gamma) (PtdIns(4)P-5-kinase gamma) (PtdInsPKIgamma) (PIP5KIgamma) Length = 668 Score = 29.6 bits (65), Expect = 3.1 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Frame = +1 Query: 49 RRKCTQRHCLCMTTAPQPGFGKRIGSTG------ASYKLQLTPSGLSNDISLDLEQDIQH 210 ++K L MT P PG GK++G G +YK + T S L I L + + H Sbjct: 35 QKKAAPTEVLSMTAQPGPGHGKKLGHRGVDASGETTYK-KTTSSTLKGAIQLGIGYTVGH 93
>NET4_MOUSE (Q9JI33) Netrin-4 precursor (Beta-netrin)| Length = 628 Score = 29.6 bits (65), Expect = 3.1 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -2 Query: 86 VMHRQCRCVHLRRGEHCNSCA 24 V+H +C C H G HC CA Sbjct: 288 VVHGRCMCKHNTAGSHCQHCA 308
>BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 124 STGASYKLQLTPSGLSNDISLDLEQDIQHSFSLQAVRHSTEH 249 S G LQ+TP G S++ISLD + FS V ++ H Sbjct: 198 SVGDQELLQITPQGTSDEISLDSAKKAACEFSETDVTNTEHH 239
>ADM1B_MOUSE (Q8R534) ADAM 1b precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 1b) (Fertilin alpha 1b subunit) Length = 806 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = -2 Query: 281 ECDLSDVH*FKCSVEWRTA*RLKLCCMSCSRSKEMSFERPEGVSCNL 141 +CD S C ++ + +LCC C+ KE RP C+L Sbjct: 425 DCDKSQCCDENCKLKGNSVCSTELCCFKCNFKKEGDVCRPADGPCDL 471
>LAMB3_HUMAN (Q13751) Laminin beta-3 chain precursor (Laminin 5 beta 3) (Laminin| B1k chain) (Kalinin B1 chain) Length = 1172 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%) Frame = -2 Query: 110 PKPGCGA-----VVMHRQCRCVHLRRGEHCNSCA 24 PKPG A V +H C C H G +C CA Sbjct: 261 PKPGASAGPSTAVQVHDVCVCQHNTAGPNCERCA 294
>SUIS_RABIT (P07768) Sucrase-isomaltase, intestinal [Contains: Sucrase (EC| 3.2.1.48); Isomaltase (EC 3.2.1.10)] Length = 1826 Score = 28.5 bits (62), Expect = 6.9 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = +1 Query: 22 CAQELQCSPRRKCTQRHCLCMTT-----APQPGFGKRIGSTGASYKLQLTPSGLSNDISL 186 C + + + KCTQR C+ T AP+ F K S Q +P+G++ D+ L Sbjct: 942 CYPDADIATQEKCTQRGCIWDTNTVNPRAPECYFPKTDNPYSVS-STQYSPTGITADLQL 1000 Query: 187 D 189 + Sbjct: 1001 N 1001
>VG72_ICHV1 (Q00103) Hypothetical gene 72 protein| Length = 1350 Score = 28.5 bits (62), Expect = 6.9 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%) Frame = +2 Query: 212 ASAFRPSAILQNI*TSVHH--------SNRTLVFPTVEKAIWSVRLQESNEPVTGVLP 361 A+AF A+ + T+VH + V P+ K I++VR E EP T V+P Sbjct: 242 ATAFPTKAVNEGFGTAVHEFLKMYDARTKALSVLPSDTK-IYTVRFMEGEEPTTAVIP 298
>NET4_PONPY (Q5RB89) Netrin-4 precursor| Length = 628 Score = 28.5 bits (62), Expect = 6.9 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = -2 Query: 86 VMHRQCRCVHLRRGEHCNSCA 24 ++H +C C H G HC CA Sbjct: 288 MVHGKCMCKHNTAGSHCQHCA 308
>NET4_HUMAN (Q9HB63) Netrin-4 precursor (Beta-netrin) (Hepar-derived| netrin-like protein) Length = 628 Score = 28.5 bits (62), Expect = 6.9 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = -2 Query: 86 VMHRQCRCVHLRRGEHCNSCA 24 ++H +C C H G HC CA Sbjct: 288 MVHGKCMCKHNTAGSHCQHCA 308
>NU2M_PHOVI (Q00540) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 347 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 18 LMCTRITMFATAQMHTTTLPMHDNSTTTRFWKKNW 122 LM +T++ T + T L MH++STTT W Sbjct: 200 LMVLNLTIYITMTLSTFMLFMHNSSTTTLSLSNTW 234
>NU2M_HALGR (P38599) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 347 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 18 LMCTRITMFATAQMHTTTLPMHDNSTTTRFWKKNW 122 LM +T++ T + T L MH++STTT W Sbjct: 200 LMILNLTIYITMTLSTFMLFMHNSSTTTLSLSNTW 234
>NADE_STRP1 (Q99YK9) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)| Length = 274 Score = 28.5 bits (62), Expect = 6.9 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -3 Query: 415 SPLR*RLAQMALRDWTREGQDTCYRFIGFLEPY 317 S L +LAQMA+ + E D Y+FI PY Sbjct: 53 STLAGKLAQMAIAELREEASDQAYQFIAVRLPY 85
>VWF_PIG (Q28833) Von Willebrand factor precursor (vWF) (Fragment)| Length = 2482 Score = 28.1 bits (61), Expect = 9.0 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -2 Query: 197 CSRSKEMSFERPEGVSCNL*DAPVLPILFPKPGCGAVVMHRQCRC 63 C R KE F + VSC + D P P+ F + C CRC Sbjct: 2202 CVRVKEEVFVQQRNVSCPMLDVPTCPVGF-QLSCKTSGCCPTCRC 2245
>CID16_SCHPO (O13798) Caffeine-induced protein 16| Length = 1202 Score = 28.1 bits (61), Expect = 9.0 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -2 Query: 251 KCSVEWRTA*RLKLCCMSCSRSKEMSFERPEGVSCNL*D 135 K + EW R L C C RSK+ S P V C+L D Sbjct: 109 KSAAEWEEIERALLSC--CKRSKDPSILFPTDVPCSLDD 145
>RT07_WHEAT (Q01902) Mitochondrial ribosomal protein S7| Length = 148 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = -2 Query: 365 RRARHLLQVHWILGALHSRWLSQRLETLECDLSDV 261 R + L + WILGA R +S R+ +C +++ Sbjct: 81 RDRQQTLAIRWILGAAFKRRISYRISLEKCSFAEI 115
>ERBB3_RAT (Q62799) Receptor tyrosine-protein kinase erbB-3 precursor (EC| 2.7.10.1) (c-erbB3) Length = 1339 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 1/17 (5%) Frame = -2 Query: 68 RCVHLRRGEHC-NSCAH 21 RC H R G HC NSC H Sbjct: 575 RCAHFRDGPHCVNSCPH 591
>ERBB3_MOUSE (Q61526) Receptor tyrosine-protein kinase erbB-3 precursor (EC| 2.7.10.1) (c-erbB3) (Glial growth factor receptor) Length = 1339 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 1/17 (5%) Frame = -2 Query: 68 RCVHLRRGEHC-NSCAH 21 RC H R G HC NSC H Sbjct: 575 RCAHFRDGPHCVNSCPH 591
>NADE_LACLA (Q9CGJ4) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)| Length = 274 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -3 Query: 415 SPLR*RLAQMALRDWTREGQDTCYRFIGFLEPY 317 S L RLAQ+A+ + +E D Y+F+ PY Sbjct: 53 SSLAGRLAQIAIEEMRQETADETYKFVAIRLPY 85 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,864,239 Number of Sequences: 219361 Number of extensions: 1273576 Number of successful extensions: 3593 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3383 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3592 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
