ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet63d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ472087.1| Zonaria spiralis strain D99_Goldberg 26S ribosoma... 40 0.82
2emb|BX324115.8| Zebrafish DNA sequence from clone DKEYP-70E6, co... 40 0.82
3emb|CR385073.6| Zebrafish DNA sequence from clone DKEY-37K20 in ... 40 0.82
4emb|CR388136.6| Zebrafish DNA sequence from clone CH211-110O3 in... 40 0.82
5emb|BX001030.7| Zebrafish DNA sequence from clone CH211-234P6 in... 40 0.82
6gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosom... 38 3.2

>gb|DQ472087.1| Zonaria spiralis strain D99_Goldberg 26S ribosomal RNA gene,
           partial sequence
          Length = 1179

 Score = 40.1 bits (20), Expect = 0.82
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  tttttgaccagttttatcag 53
           ||||||||||||||||||||
Sbjct: 932 tttttgaccagttttatcag 951



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>emb|BX324115.8| Zebrafish DNA sequence from clone DKEYP-70E6, complete sequence
          Length = 202547

 Score = 40.1 bits (20), Expect = 0.82
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     ttatccttcgttaacttttt 38
              ||||||||||||||||||||
Sbjct: 142631 ttatccttcgttaacttttt 142612



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>emb|CR385073.6| Zebrafish DNA sequence from clone DKEY-37K20 in linkage group 20,
            complete sequence
          Length = 22211

 Score = 40.1 bits (20), Expect = 0.82
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 19   ttatccttcgttaacttttt 38
            ||||||||||||||||||||
Sbjct: 4514 ttatccttcgttaacttttt 4495



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>emb|CR388136.6| Zebrafish DNA sequence from clone CH211-110O3 in linkage group 20,
            complete sequence
          Length = 6816

 Score = 40.1 bits (20), Expect = 0.82
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   ttatccttcgttaacttttt 38
            ||||||||||||||||||||
Sbjct: 2303 ttatccttcgttaacttttt 2322



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>emb|BX001030.7| Zebrafish DNA sequence from clone CH211-234P6 in linkage group 24,
             complete sequence
          Length = 156560

 Score = 40.1 bits (20), Expect = 0.82
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    tttttgaccagttttatcag 53
             ||||||||||||||||||||
Sbjct: 23615 tttttgaccagttttatcag 23596



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>gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosome 7, complete sequence
          Length = 242297

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 36     tttgaccagttttatcaga 54
              |||||||||||||||||||
Sbjct: 195093 tttgaccagttttatcaga 195075


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 431,233
Number of Sequences: 3902068
Number of extensions: 431233
Number of successful extensions: 39013
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39007
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 58
effective length of database: 17,151,101,840
effective search space: 994763906720
effective search space used: 994763906720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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