ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet63d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ102384.2| Hordeum vulgare root abundant factor (RAF) gene, ... 64 3e-07
2gb|DQ102383.2| Hordeum vulgare root abundant factor (RAF) mRNA, ... 64 3e-07
3gb|AC163008.9| Mus musculus chromosome 15, clone RP23-105P11, co... 44 0.24
4gb|AC155946.7| Mus musculus 6 BAC RP24-483K3 (Roswell Park Cance... 42 0.96
5emb|AL954222.1| Pan troglodytes chromosome 22 clone q21.2, compl... 42 0.96
6gb|AC122026.3| Mus musculus BAC clone RP24-390D21 from chromosom... 42 0.96
7emb|AL163278.2|HS21C078 Homo sapiens chromosome 21 segment HS21C078 42 0.96
8emb|AL603844.7| Human DNA sequence from clone RP11-541I21 on chr... 42 0.96
9gb|AC158651.12| Mus musculus BAC RP24-68I7 (Roswell Park Cancer... 42 0.96
10gb|AC117789.17| Mus musculus chromosome 1, clone RP24-548D18, co... 42 0.96
11dbj|AP001044.2| Homo sapiens genomic DNA, chromosome 21, PCR fra... 42 0.96
12gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, com... 40 3.8
13gb|AC102643.9| Mus musculus chromosome 8, clone RP23-304B22, com... 40 3.8
14gb|AC115989.6| Homo sapiens chromosome 17, clone CTD-2104P17, co... 40 3.8
15emb|BX546446.15| Zebrafish DNA sequence from clone DKEY-7K24 in ... 40 3.8 
>gb|DQ102384.2| Hordeum vulgare root abundant factor (RAF) gene, promoter region and
            complete cds
          Length = 3958

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 61/68 (89%), Gaps = 2/68 (2%)
 Strand = Plus / Minus

                                                                        
Query: 73   tgacgaaca-gaaactcaaacagtagaatacatttc-cataagcattcatcaaggaagca 130
            ||||||||| ||||||||||||||||||||||||||  ||  || |||||| ||||||||
Sbjct: 3781 tgacgaacaagaaactcaaacagtagaatacatttcgaatctgcgttcatcgaggaagca 3722

                    
Query: 131  atcatgca 138
            ||||||||
Sbjct: 3721 atcatgca 3714



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 7    cagtaccaaagactagaaaaaatcatgacagggtacaatacagtt 51
            |||||||||||||||| | | |||||||||| |||||||||||||
Sbjct: 3896 cagtaccaaagactagtacagatcatgacagagtacaatacagtt 3852



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 105/131 (80%), Gaps = 10/131 (7%)
 Strand = Plus / Minus

                                                                        
Query: 170  ttcctggccatggatcaaaatctggtctgagcaaggtttctgtagacgaatatttacaag 229
            |||||||||| | | || |||||||||||||||||||| ||||   ||   |||||||||
Sbjct: 3691 ttcctggccaagaaacagaatctggtctgagcaaggtt-ctgtgcgcgggcatttacaag 3633

                                                                        
Query: 230  gaacta----gatgccagatggagtttcttacaaccgaccgagtgca-----tcacacgg 280
            ||||||    || ||||| ||||| ||||||||||| || |||||||     ||||||||
Sbjct: 3632 gaactacgtagaggccaggtggagattcttacaaccaacagagtgcagtgcatcacacgg 3573

                       
Query: 281  agagcgtcaga 291
            | |||||||||
Sbjct: 3572 aaagcgtcaga 3562
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>gb|DQ102383.2| Hordeum vulgare root abundant factor (RAF) mRNA, complete cds
          Length = 1394

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 61/68 (89%), Gaps = 2/68 (2%)
 Strand = Plus / Minus

                                                                        
Query: 73   tgacgaaca-gaaactcaaacagtagaatacatttc-cataagcattcatcaaggaagca 130
            ||||||||| ||||||||||||||||||||||||||  ||  || |||||| ||||||||
Sbjct: 1217 tgacgaacaagaaactcaaacagtagaatacatttcgaatctgcgttcatcgaggaagca 1158

                    
Query: 131  atcatgca 138
            ||||||||
Sbjct: 1157 atcatgca 1150



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 7    cagtaccaaagactagaaaaaatcatgacagggtacaatacagtt 51
            |||||||||||||||| | | |||||||||| |||||||||||||
Sbjct: 1332 cagtaccaaagactagtacagatcatgacagagtacaatacagtt 1288



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 105/131 (80%), Gaps = 10/131 (7%)
 Strand = Plus / Minus

                                                                        
Query: 170  ttcctggccatggatcaaaatctggtctgagcaaggtttctgtagacgaatatttacaag 229
            |||||||||| | | || |||||||||||||||||||| ||||   ||   |||||||||
Sbjct: 1127 ttcctggccaagaaacagaatctggtctgagcaaggtt-ctgtgcgcgggcatttacaag 1069

                                                                        
Query: 230  gaacta----gatgccagatggagtttcttacaaccgaccgagtgca-----tcacacgg 280
            ||||||    || ||||| ||||| ||||||||||| || |||||||     ||||||||
Sbjct: 1068 gaactacgtagaggccaggtggagattcttacaaccaacagagtgcagtgcatcacacgg 1009

                       
Query: 281  agagcgtcaga 291
            | |||||||||
Sbjct: 1008 aaagcgtcaga 998
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>gb|AC163008.9| Mus musculus chromosome 15, clone RP23-105P11, complete sequence
          Length = 211071

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 7     cagtaccaaagactagaaaaaa 28
             ||||||||||||||||||||||
Sbjct: 68142 cagtaccaaagactagaaaaaa 68163
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>gb|AC155946.7| Mus musculus 6 BAC RP24-483K3 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 178502

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 24     aaaaatcatgacagggtacaa 44
              |||||||||||||||||||||
Sbjct: 174960 aaaaatcatgacagggtacaa 174940
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>emb|AL954222.1| Pan troglodytes chromosome 22 clone q21.2, complete sequence
          Length = 208827

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 82     gaaactcaaacagtagaatac 102
              |||||||||||||||||||||
Sbjct: 103044 gaaactcaaacagtagaatac 103024
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>gb|AC122026.3| Mus musculus BAC clone RP24-390D21 from chromosome 1, complete sequence
          Length = 205642

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   taagcattcatcaaggaagca 130
             |||||||||||||||||||||
Sbjct: 19048 taagcattcatcaaggaagca 19068
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>emb|AL163278.2|HS21C078 Homo sapiens chromosome 21 segment HS21C078
          Length = 340000

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 82     gaaactcaaacagtagaatac 102
              |||||||||||||||||||||
Sbjct: 107563 gaaactcaaacagtagaatac 107543
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>emb|AL603844.7| Human DNA sequence from clone RP11-541I21 on chromosome 1, complete
            sequence
          Length = 220185

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 71   tctgacgaacagaaactcaaa 91
            |||||||||||||||||||||
Sbjct: 2141 tctgacgaacagaaactcaaa 2121
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>gb|AC158651.12| Mus musculus  BAC RP24-68I7 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 190089

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    aaaaatcatgacagggtacaa 44
             |||||||||||||||||||||
Sbjct: 75882 aaaaatcatgacagggtacaa 75862
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>gb|AC117789.17| Mus musculus chromosome 1, clone RP24-548D18, complete sequence
          Length = 180733

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 110    taagcattcatcaaggaagca 130
              |||||||||||||||||||||
Sbjct: 108390 taagcattcatcaaggaagca 108410
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>dbj|AP001044.2| Homo sapiens genomic DNA, chromosome 21, PCR fragment KUPCR2, ERG-ETS2
             region, complete sequence
          Length = 12423

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 82    gaaactcaaacagtagaatac 102
             |||||||||||||||||||||
Sbjct: 11990 gaaactcaaacagtagaatac 11970
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>gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, complete sequence
          Length = 130895

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    aaacagtagaatacatttcc 108
             ||||||||||||||||||||
Sbjct: 66343 aaacagtagaatacatttcc 66324
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>gb|AC102643.9| Mus musculus chromosome 8, clone RP23-304B22, complete sequence
          Length = 210037

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    agcattcatcaaggaagcaa 131
              ||||||||||||||||||||
Sbjct: 192373 agcattcatcaaggaagcaa 192392
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>gb|AC115989.6| Homo sapiens chromosome 17, clone CTD-2104P17, complete sequence
          Length = 40710

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   caaggaagcaatcatgcagt 140
             ||||||||||||||||||||
Sbjct: 25244 caaggaagcaatcatgcagt 25263
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>emb|BX546446.15| Zebrafish DNA sequence from clone DKEY-7K24 in linkage group 6,
             complete sequence
          Length = 196818

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   ggatcaaaatctggtctgag 200
             ||||||||||||||||||||
Sbjct: 12305 ggatcaaaatctggtctgag 12286


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,610,768
Number of Sequences: 3902068
Number of extensions: 2610768
Number of successful extensions: 54365
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54328
Number of HSP's gapped (non-prelim): 35
length of query: 291
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 269
effective length of database: 17,147,199,772
effective search space: 4612596738668
effective search space used: 4612596738668
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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