>emb|AJ872264.1| Festuca glaucescens x Lolium multiflorum microsatellite DNA, clone
           B5-D12
          Length = 620

 Score =  143 bits (72), Expect = 5e-31
 Identities = 108/120 (90%)
 Strand = Plus / Minus

                                                                       
Query: 265 actttacggagtagaggttcccagggatgttatcggcagccctgtcgcgcacccaggtct 324
           ||||||| |||||||||||||| |||||||| ||||| ||| |||||||||||||||  |
Sbjct: 593 actttacagagtagaggttcccggggatgttgtcggcggccttgtcgcgcacccaggatt 534

                                                                       
Query: 325 tgccgccattggttgttttcagcaggacgccgctcccaccggctgcccacgcctcatcct 384
           ||||||| ||  |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 533 tgccgccgttttttgttttcagcaggacgccgcttccaccggcagcccacgcctcatcct 474

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                            
Query: 265      actttacggagtagaggttcccagggatgttatcggcagccctgtcgcgcacccaggtct 324
                ||||||| |||||||| ||  | | ||||||||| |||||  ||||||||||||||||||
Sbjct: 30574728 actttacagagtagagattggctgcgatgttatcagcagctttgtcgcgcacccaggtct 30574787

                                                                            
Query: 325      tgccgccattggttgttttcagcaggacgccgctcccaccggctgcccacgcctcatcct 384
                | |||||||| |||||||| |||||||| || || |||||||| ||||| || |||||||
Sbjct: 30574788 tcccgccatttgttgtttttagcaggacaccacttccaccggcggcccatgcttcatcct 30574847



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                            
Query: 200      tcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaaccttggttgtcccc 259
                ||||||||| ||||| |||||||||||||||||||| |||||  | |||| |||||| ||
Sbjct: 30574539 tcagccaacatatcgaagcaagacgccgtcgttcccaagcacgtatcctttgttgtcacc 30574598

                       
Query: 260      aatgaac 266
                || ||||
Sbjct: 30574599 aaggaac 30574605

>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0069C14
          Length = 150579

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                         
Query: 265   actttacggagtagaggttcccagggatgttatcggcagccctgtcgcgcacccaggtct 324
             ||||||| |||||||| ||  | | ||||||||| |||||  ||||||||||||||||||
Sbjct: 73291 actttacagagtagagattggctgcgatgttatcagcagctttgtcgcgcacccaggtct 73350

                                                                         
Query: 325   tgccgccattggttgttttcagcaggacgccgctcccaccggctgcccacgcctcatcct 384
             | |||||||| |||||||| |||||||| || || |||||||| ||||| || |||||||
Sbjct: 73351 tcccgccatttgttgtttttagcaggacaccacttccaccggcggcccatgcttcatcct 73410



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                         
Query: 200   tcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaaccttggttgtcccc 259
             ||||||||| ||||| |||||||||||||||||||| |||||  | |||| |||||| ||
Sbjct: 73102 tcagccaacatatcgaagcaagacgccgtcgttcccaagcacgtatcctttgttgtcacc 73161

                    
Query: 260   aatgaac 266
             || ||||
Sbjct: 73162 aaggaac 73168

>ref|NM_122218.2| Arabidopsis thaliana HCF136 AT5G23120 (HCF136) mRNA, complete cds
          Length = 1410

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 198  cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 249
            ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 1247 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 1196

>dbj|AK221097.1| Arabidopsis thaliana mRNA for photosystem II stability/assembly
           factor HCF136, partial cds, clone: RAFL22-84-H16
          Length = 370

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 198 cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 249
           ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 219 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 168

>gb|AY045691.1| Arabidopsis thaliana AT5g23120/MYJ24_11 mRNA, complete cds
          Length = 1386

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 198  cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 249
            ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 1245 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 1194

>emb|BX830635.1|CNS0A01H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB95ZC08 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1343

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 198  cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 249
            ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 1244 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 1193

>dbj|AB006708.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYJ24
          Length = 78844

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                 
Query: 198   cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 249
             ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 70438 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 70387

>emb|Y15628.1|ATHCF136 Arabidopsis thaliana mRNA for nuclear protein HCF136
          Length = 1404

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 198  cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 249
            ||||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 1243 cttcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 1192

>gb|BT004549.1| Arabidopsis thaliana At5g23120/MYJ24_11 gene, complete cds
          Length = 1212

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 200  tcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 249
            ||||||||| |||||||||||||| || ||||| || |||||||| ||||
Sbjct: 1212 tcagccaacatatcggagcaagactccatcgttgccaagcacaaatcctt 1163

>emb|BX830603.1|CNS0A066 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB93ZE05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 306

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 198 cttcagccaacgtatcggagcaagacgccgtcgttcccgagcacaaaacctt 249
           ||||||||||| |||||||||||||| || ||||| |  |||||||| ||||
Sbjct: 173 cttcagccaacatatcggagcaagactccatcgttgcgaagcacaaatcctt 122

>gb|AC166486.5| Mus musculus chromosome 1, clone RP23-187M9, complete sequence
          Length = 187098

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 62    cagtaaaagacaggtaagatt 82
             |||||||||||||||||||||
Sbjct: 41175 cagtaaaagacaggtaagatt 41195

>gb|AC131303.8| Mus musculus chromosome 1, clone RP24-119O19, complete sequence
          Length = 187110

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    tatgcctctgaatatttgaa 42
             ||||||||||||||||||||
Sbjct: 68593 tatgcctctgaatatttgaa 68612

>gb|AC144383.2| Pan troglodytes BAC clone CH251-321N7 from X, complete sequence
          Length = 149315

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    acaggtaagatttacactctcttg 94
             |||||||| |||||||||||||||
Sbjct: 81581 acaggtaacatttacactctcttg 81558

>emb|BX901914.13| Zebrafish DNA sequence from clone DKEY-27F18 in linkage group 4,
             complete sequence
          Length = 149383

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   aatcagcagcctttcacatg 135
             ||||||||||||||||||||
Sbjct: 16886 aatcagcagcctttcacatg 16867

>gb|AC123556.4| Mus musculus BAC clone RP23-176M9 from 1, complete sequence
          Length = 198900

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    tatgcctctgaatatttgaa 42
             ||||||||||||||||||||
Sbjct: 53236 tatgcctctgaatatttgaa 53217

>emb|BX004862.9| Zebrafish DNA sequence from clone DKEY-200M9 in linkage group 4
             Contains the gene for a novel protein similar to
             vertebrate TAFA protein 5 (TAFA5) and a CpG island,
             complete sequence
          Length = 174359

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   aatcagcagcctttcacatg 135
             ||||||||||||||||||||
Sbjct: 91109 aatcagcagcctttcacatg 91128

>gb|AC113137.2| Homo sapiens chromosome 18, clone RP11-622J9, complete sequence
          Length = 167694

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 153    cattacatacaaaaagggtttgca 176
              ||||||||||| ||||||||||||
Sbjct: 142829 cattacatacataaagggtttgca 142806

>gb|AC154448.2| Mus musculus BAC clone RP23-185F24 from chromosome 16, complete
             sequence
          Length = 203269

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    aaataacagtaaaagacagg 75
             ||||||||||||||||||||
Sbjct: 89749 aaataacagtaaaagacagg 89768

>gb|AC154421.2| Mus musculus BAC clone RP24-217C15 from 16, complete sequence
          Length = 188761

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     aaataacagtaaaagacagg 75
              ||||||||||||||||||||
Sbjct: 150762 aaataacagtaaaagacagg 150781


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,858,108
Number of Sequences: 3902068
Number of extensions: 2858108
Number of successful extensions: 49217
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49182
Number of HSP's gapped (non-prelim): 35
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)