>INVO_PANPA (P14591) Involucrin|
          Length = 560

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 8   EQRFSKVERVQKTPF-LKKKSR*IDRGPHRQEQQKFLEPPK*QEGSTRGNNQCSPITKQG 184
           EQ+  +++ ++K    L+   + + +  H ++Q+K LEPP+ Q+G  +   Q     K  
Sbjct: 449 EQQEGQLKHLEKQEAQLELPEQQVGQPKHLEQQEKQLEPPEQQDGQLKHLEQQEGQLKDL 508

Query: 185 RQLQASLSQHKLEP 226
            Q +  L Q    P
Sbjct: 509 EQQKGQLEQPVFAP 522

>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein|
           5.9) (Ultrahigh sulfur keratin-associated protein 5.9)
           (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
           high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
          Length = 169

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = -1

Query: 216 LCCDREACSCLPCFVIGLHWLLPLVEPSCYFGGSRNFCCSCLCGPLS 76
           +CC   ACSC  C   G          SC  GGS+  C SC C   S
Sbjct: 45  VCCCVPACSCSSCGKRGCG--------SC--GGSKGGCGSCGCSQCS 81

>ADCY9_HUMAN (O60503) Adenylate cyclase type 9 (EC 4.6.1.1) (Adenylate cyclase|
           type IX) (ATP pyrophosphate-lyase 9) (Adenylyl cyclase
           9)
          Length = 1353

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 59  KKSR*IDRGPHRQEQQKFLEPPK*QEGSTRGNNQCSPITKQGRQLQASLSQHKLEP 226
           K S     GP+ + Q   L PP+ ++ +    + C  + ++GR    SL Q  L P
Sbjct: 659 KNSTKASGGPNPKTQNGLLSPPQEEKLTNSQTSLCEILQEKGRWAGVSLDQSALLP 714

>SYT_METAC (Q8TLX7) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 635

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
 Frame = +2

Query: 2   TREQRFSKVERVQKTPFLK---------KKSR*IDRGPHRQEQQKFLEPPK*QEGSTRGN 154
           T +    +VE    TP+ K          KSR ++R P   E  + LE    + GS  GN
Sbjct: 177 TPDGELHEVETFDLTPYPKLQQFVNYEISKSRAVERAPPHVELMRRLELADYEPGSDSGN 236

Query: 155 NQCSPITKQGRQLQASLSQHKLE 223
            +  P   +GR +++ L  + L+
Sbjct: 237 MRYYP---KGRLVKSLLENYVLD 256

>VE2_HPV24 (P50770) Regulatory protein E2|
          Length = 467

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 1   NTRTKIQQSGKGSEDALPKEEKQMNRQGATQTRAAEISRTTKVTGRFNKRQ*PVQPDNKA 180
           ++R + + S +  +       +  +R  +TQTR+   SR ++ T R N+R    + D   
Sbjct: 252 DSRCRRRSSSRQKKQGRRARSRTRSRCSSTQTRSRSTSRRSRSTSRGNRR---CRGDTPR 308

Query: 181 GQAATS 198
           GQ   S
Sbjct: 309 GQRGVS 314

>XIST_MOUSE (P27571) X inactive-specific transcript protein (Fragment)|
          Length = 298

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -1

Query: 216 LCCDREACSCLPCFVIGLHWLLPLVEPSCYFGGSRNFCCSCL 91
           LC     C CLPCFV   + LLP V  S       +F C  L
Sbjct: 53  LCLPCFVCLCLPCFV---YLLLPCVSNSLLHLFLPSFACLLL 91

>YIS2_YEAST (P40562) Putative ATP-dependent RNA helicase YIR002C (EC 3.6.1.-)|
          Length = 993

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 89  HRQEQQKFLEPPK*QEGSTRGNNQCSPITKQGRQLQASLSQHKLEPPITNN 241
           HRQEQ+KFLE  + +  +     + +  T    + Q S    K++  + +N
Sbjct: 512 HRQEQEKFLEAERTKRAANDKLERSARRTGSSEEAQISGMNQKMQKEVIHN 562

>INVO_HYLLA (P17941) Involucrin|
          Length = 522

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = +2

Query: 8   EQRFSKVERVQKTPF-LKKKSR*IDRGPHRQEQQKFLEPPK*QEGSTRGNNQCSPITKQG 184
           EQ+  +++ ++K    L+   + + +  H ++Q+K LE P+ QEG  +   Q     K  
Sbjct: 404 EQQEGQLKHLEKQEAQLELPEQQVGQPKHPEQQEKQLEHPEQQEGQLKHLEQQEGQLKDL 463

Query: 185 RQLQASLSQH--KLEPPI 232
            Q +  L Q   +LE P+
Sbjct: 464 EQQKGQLEQQQGQLEQPV 481


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,040,123
Number of Sequences: 219361
Number of extensions: 744792
Number of successful extensions: 2008
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2005
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)