ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet62c04 |
|---|---|
| Clone Library Name | barley_pub |
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/33 (48%), Positives = 24/33 (72%) Frame = -2 Query: 229 PRTSVVIGGHTMEDNLLEFDLQRARLGFSSSLL 131 PR + +G +E+NL+ FDL R+R+GFS+S L Sbjct: 379 PRAEITLGARQLEENLVVFDLARSRVGFSTSSL 411
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 37.0 bits (84), Expect = 0.014 Identities = 16/33 (48%), Positives = 23/33 (69%) Frame = -2 Query: 229 PRTSVVIGGHTMEDNLLEFDLQRARLGFSSSLL 131 PR V +G +E+ L+ FDL R+R+GFS+S L Sbjct: 385 PRAEVTLGTRQLEEKLMVFDLARSRVGFSTSSL 417
>SOX4_HUMAN (Q06945) Transcription factor SOX-4| Length = 474 Score = 30.8 bits (68), Expect = 0.99 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Frame = +1 Query: 76 PFHLLSTQGGSCCRSSAGTAGRS*TRASPAADRTPAG-------CPPSCAPRSPPTSA 228 P L +G C + +GRS +SPAA R+PA S AP S P+ A Sbjct: 321 PLGLYEEEGAGCSPDAPSLSGRSSAASSPAAGRSPADHRGYASLRAASPAPSSAPSHA 378
>SASH1_HUMAN (O94885) SAM and SH3 domain-containing protein 1 (Proline-glutamate| repeat-containing protein) Length = 1247 Score = 30.4 bits (67), Expect = 1.3 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 8/33 (24%) Frame = +1 Query: 151 RASPAADRTPAGCPPSCAPR--------SPPTS 225 R SPA+ +P+ CPP+ APR SPP++ Sbjct: 1023 RGSPASPTSPSDCPPALAPRPLSGQAPGSPPST 1055
>CENPH_HUMAN (Q9H3R5) Centromere protein H (Kinetochore protein CENP-H)| Length = 247 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = -1 Query: 230 PADVGGDRGAHDGGQPAGVRSAAGEARVQLLPAVPADDLQQL 105 PAD GG+ A Q AG ++A E R+ LL + A QQL Sbjct: 13 PADSGGEGRAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQL 54
>EPAS1_HUMAN (Q99814) Endothelial PAS domain-containing protein 1 (EPAS-1)| (Member of PAS protein 2) (MOP2) (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) (HIF-1 alpha-like factor) (HLF) Length = 870 Score = 30.0 bits (66), Expect = 1.7 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Frame = -3 Query: 177 SSICSGRGS-GSAPPCCSGRRPATTSALGRQQMEWHPD 67 SSI GS S PPCC +S GR +W PD Sbjct: 605 SSIFFDAGSKASLPPCCGQASTPLSSMGGRSNTQWPPD 642
>EPAS1_RAT (Q9JHS1) Endothelial PAS domain-containing protein 1 (EPAS-1)| (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) Length = 874 Score = 30.0 bits (66), Expect = 1.7 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Frame = -3 Query: 177 SSICSGRGS-GSAPPCCSGRRPATTSALGRQQMEWHPD 67 S+I GS GS PPCC +S GR W PD Sbjct: 604 STIFFDAGSKGSLPPCCGQASTPLSSMGGRSNTPWPPD 641
>ADCY5_CANFA (P30803) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase| type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5) (Ca(2+)-inhibitable adenylyl cyclase) Length = 1265 Score = 29.6 bits (65), Expect = 2.2 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = -1 Query: 218 GGDRGAHDGGQPAGVRSAAGEARVQLLPA--VPADDLQQL 105 GGDRGA DG PAG A A +Q+ + P+D L++L Sbjct: 194 GGDRGARDGDGPAG-PGACCRALLQIFRSKKFPSDKLERL 232
>DBPA_XENLA (Q5PQD5) DNA-binding protein A (Cold shock domain-containing| protein A) Length = 361 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +1 Query: 118 SSAGTAGRS*TRASPAADRTPAGCPPSCAPRSPPTS 225 S AG A T AA PA PP AP+SP S Sbjct: 2 SEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAAS 37
>DBPA_RAT (Q62764) DNA-binding protein A (Cold shock domain-containing| protein A) (Muscle Y-box protein YB2) (Y-box-binding protein-A) (RYB-A) Length = 361 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +1 Query: 118 SSAGTAGRS*TRASPAADRTPAGCPPSCAPRSPPTS 225 S AG A T AA PA PP AP+SP S Sbjct: 2 SEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAAS 37
>DBPA_MOUSE (Q9JKB3) DNA-binding protein A (Cold shock domain-containing| protein A) (Y-box protein 3) Length = 361 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +1 Query: 118 SSAGTAGRS*TRASPAADRTPAGCPPSCAPRSPPTS 225 S AG A T AA PA PP AP+SP S Sbjct: 2 SEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAAS 37
>COL13_CAEEL (P20631) Cuticle collagen 13 precursor| Length = 316 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = +1 Query: 94 TQGGSCCRSSAGTAGRS*TRASPAADRTPAGCPPSCAPRSPPTSA 228 + GGSCC +G AG + SP D P AP +P A Sbjct: 117 SSGGSCCSCGSGAAGPA---GSPGQDGAPGNDGAPGAPGNPGQDA 158
>COL12_CAEEL (P20630) Cuticle collagen 12 precursor| Length = 316 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = +1 Query: 94 TQGGSCCRSSAGTAGRS*TRASPAADRTPAGCPPSCAPRSPPTSA 228 + GGSCC +G AG + SP D P AP +P A Sbjct: 117 SSGGSCCSCGSGAAGPA---GSPGQDGAPGNDGAPGAPGNPGQDA 158
>EPAS1_MOUSE (P97481) Endothelial PAS domain-containing protein 1 (EPAS-1)| (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) (HIF-1 alpha-like factor) (MHLF) (HIF-related factor) (HRF) Length = 874 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Frame = -3 Query: 177 SSICSGRGS-GSAPPCCSGRRPATTSALGRQQMEWHPD 67 SSI GS GS PCC +S GR +W PD Sbjct: 604 SSIFFDAGSKGSLSPCCGQASTPLSSMGGRSNTQWPPD 641
>CXGS_CONGE (P15472) Conotoxin GS (CGS)| Length = 34 Score = 28.5 bits (62), Expect = 4.9 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -3 Query: 168 CSGRGSGSAPPCCSGRR 118 CSGRGS P CC G R Sbjct: 2 CSGRGSRCPPQCCMGLR 18
>SOX4_MOUSE (Q06831) Transcription factor SOX-4| Length = 440 Score = 28.5 bits (62), Expect = 4.9 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 7/58 (12%) Frame = +1 Query: 76 PFHLLSTQGGSCCRSSAGTAGRS*TRASPAADRTPAG-------CPPSCAPRSPPTSA 228 P L G C +GRS +SPAA R+PA S AP S P+ A Sbjct: 289 PLGLYEDGGPGCSPDGRSLSGRSSAASSPAASRSPADHRGYASLRAASPAPSSAPSHA 346
>DPOLA_LEIDO (O00874) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1339 Score = 28.5 bits (62), Expect = 4.9 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +2 Query: 68 SGCHSICCLPKAEVVAGRLPEQQGGAEPEPRPLQIELQQ 184 SG +I LP A+ A +L + GA+P P+P Q L Q Sbjct: 48 SGDLTIPQLPSAKKAAKKLRKPPSGAKPTPKPKQQTLAQ 86
>PGCA_BOVIN (P13608) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2364 Score = 28.5 bits (62), Expect = 4.9 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +2 Query: 47 ISSSAIPSGCHSICCLPKAEVVAGRLPEQQGGAEPEP 157 + S++P P+AEV A PE GGA P Sbjct: 1924 VEVSSVPESSGETSAYPEAEVGASAAPEASGGASGSP 1960
>HXD3_MOUSE (P09027) Homeobox protein Hox-D3 (Hox-4.1) (MH-19)| Length = 417 Score = 28.5 bits (62), Expect = 4.9 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Frame = +1 Query: 13 NFDCNLNNASTHIIFCNPIRMPFHLLSTQGGSCCRSSAGTAGRS*TRASPA---ADRTPA 183 + D + +++ I P+R P H + GSC R G + P +++ P Sbjct: 42 SLDSDYPSSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGNQPPGLNSEQQPP 101 Query: 184 GCPPSCAPRSPPTS 225 PP P PP+S Sbjct: 102 QPPPPPPPTLPPSS 115
>DEND_HUMAN (O94850) Dendrin| Length = 657 Score = 28.1 bits (61), Expect = 6.4 Identities = 15/37 (40%), Positives = 17/37 (45%) Frame = +1 Query: 103 GSCCRSSAGTAGRS*TRASPAADRTPAGCPPSCAPRS 213 GS A G + T +PA T A C P APRS Sbjct: 274 GSDSHPQAKATGSAGTEIAPAGSATAAPCAPHPAPRS 310
>TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trophinin-assisting| protein) Length = 778 Score = 28.1 bits (61), Expect = 6.4 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -3 Query: 147 SAPPCCSGRRPATTSALGRQQMEWHP 70 S PPCCS PATTS + Q HP Sbjct: 657 SLPPCCSQWAPATTSLIFSSQ---HP 679
>AXUD1_HUMAN (Q96S65) Axin-1 up-regulated gene 1 protein (TGF-beta-induced| apoptosis protein 3) (TAIP-3) (URAX1 protein) Length = 589 Score = 28.1 bits (61), Expect = 6.4 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 Query: 47 ISSSAIPSGCHSICCLPKAEVVAGRLPEQQGGAEPEPRP 163 +SSS+ SGC S C P + V E++G + P P Sbjct: 19 VSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLP 57
>AAPK1_RAT (P54645) 5'-AMP-activated protein kinase catalytic subunit alpha-1| (EC 2.7.11.1) (AMPK alpha-1 chain) Length = 548 Score = 27.7 bits (60), Expect = 8.3 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = +3 Query: 48 YHLLQSHPDAIPFVVYPRRKLLQVVCRNSREELNPSLAR 164 +HL + HP+ +PF+V + R++ +ELNP ++ Sbjct: 354 HHLTRPHPERVPFLVAETPR-----ARHTLDELNPQKSK 387
>AAPK1_MOUSE (Q5EG47) 5'-AMP-activated protein kinase catalytic subunit alpha-1| (EC 2.7.11.1) (AMPK alpha-1 chain) Length = 548 Score = 27.7 bits (60), Expect = 8.3 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = +3 Query: 48 YHLLQSHPDAIPFVVYPRRKLLQVVCRNSREELNPSLAR 164 +HL + HP+ +PF+V + R++ +ELNP ++ Sbjct: 354 HHLTRPHPERVPFLVAETPR-----ARHTLDELNPQKSK 387
>AAPK1_PONPY (Q5RDH5) 5'-AMP-activated protein kinase catalytic subunit alpha-1| (EC 2.7.11.1) (AMPK alpha-1 chain) Length = 550 Score = 27.7 bits (60), Expect = 8.3 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = +3 Query: 48 YHLLQSHPDAIPFVVYPRRKLLQVVCRNSREELNPSLAR 164 +HL + HP+ +PF+V + R++ +ELNP ++ Sbjct: 356 HHLTRPHPERVPFLVAETPR-----ARHTLDELNPQKSK 389
>AAPK1_HUMAN (Q13131) 5'-AMP-activated protein kinase catalytic subunit alpha-1| (EC 2.7.11.1) (AMPK alpha-1 chain) Length = 550 Score = 27.7 bits (60), Expect = 8.3 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = +3 Query: 48 YHLLQSHPDAIPFVVYPRRKLLQVVCRNSREELNPSLAR 164 +HL + HP+ +PF+V + R++ +ELNP ++ Sbjct: 356 HHLTRPHPERVPFLVAETPR-----ARHTLDELNPQKSK 389 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,797,798 Number of Sequences: 219361 Number of extensions: 739087 Number of successful extensions: 4000 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3537 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3991 length of database: 80,573,946 effective HSP length: 52 effective length of database: 69,167,174 effective search space used: 1660012176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
