| Clone Name | rbaet62a04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein Length = 1225 Score = 632 bits (319), Expect = e-178 Identities = 328/331 (99%) Strand = Plus / Minus Query: 3 aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1199 aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 1140 Query: 63 agattacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagc 122 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1139 agattacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagt 1080 Query: 123 acatcaaacttggaagacaaattggaattccacggtaacacggacgatgggaagagaggg 182 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1079 acatcaaacttggaagacaaattggaattccacggtaacagggacgatgggaagagaggg 1020 Query: 183 ccgcccccatcagaaagaaattcactcagaacacgcagtttgctcttcgggttgggatgg 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1019 ccgcccccatcagaaagaaattcactcagaacacgcagtttgctcttcgggttgggatgg 960 Query: 243 catctttctttgtagcagcagcttaggacttggtcttgaatgggatcgctctgatgacca 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 959 catctttctttgtagcagcagcttaggacttggtcttgaatgggatcgctctgatgacca 900 Query: 303 cctggtggtagatgacggccagcgcggcgcc 333 |||||||||||||| |||||||||||||||| Sbjct: 899 cctggtggtagatggcggccagcgcggcgcc 869
>gb|AF131201.1| Zea mays plasma membrane MIP protein (pip1-2) mRNA, complete cds Length = 1280 Score = 75.8 bits (38), Expect = 8e-11 Identities = 68/78 (87%) Strand = Plus / Minus Query: 260 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacg 319 |||||||| ||| || ||||||| ||||| |||||||||| |||||||||||||||| | Sbjct: 935 gcagcttaagacctgctcttgaacgggatggctctgatgatcacctggtggtagatggca 876 Query: 320 gccagcgcggcgccaatg 337 ||||| || ||||||||| Sbjct: 875 gccagggcagcgccaatg 858
>emb|AJ224327.1|OSAJ4327 Oryza sativa mRNA for aquaporin, complete CDS Length = 1139 Score = 73.8 bits (37), Expect = 3e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 263 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacggcc 322 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||| | ||| Sbjct: 896 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 837 Query: 323 agcgcggcgccaa 335 || || ||||||| Sbjct: 836 agggcagcgccaa 824
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 73.8 bits (37), Expect = 3e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 263 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacggcc 322 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||| | ||| Sbjct: 27065653 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 27065594 Query: 323 agcgcggcgccaa 335 || || ||||||| Sbjct: 27065593 agggcagcgccaa 27065581
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 73.8 bits (37), Expect = 3e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 263 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacggcc 322 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||| | ||| Sbjct: 37302 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 37243 Query: 323 agcgcggcgccaa 335 || || ||||||| Sbjct: 37242 agggcagcgccaa 37230
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461B08 Length = 153743 Score = 73.8 bits (37), Expect = 3e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 263 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacggcc 322 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||| | ||| Sbjct: 118855 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 118796 Query: 323 agcgcggcgccaa 335 || || ||||||| Sbjct: 118795 agggcagcgccaa 118783
>dbj|AK104658.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D06, full insert sequence Length = 1128 Score = 73.8 bits (37), Expect = 3e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 263 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacggcc 322 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||| | ||| Sbjct: 929 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 870 Query: 323 agcgcggcgccaa 335 || || ||||||| Sbjct: 869 agggcagcgccaa 857
>dbj|AK103807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147A07, full insert sequence Length = 1205 Score = 73.8 bits (37), Expect = 3e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 263 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacggcc 322 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||| | ||| Sbjct: 984 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 925 Query: 323 agcgcggcgccaa 335 || || ||||||| Sbjct: 924 agggcagcgccaa 912
>dbj|AK061769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C05, full insert sequence Length = 1136 Score = 73.8 bits (37), Expect = 3e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 263 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacggcc 322 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||| | ||| Sbjct: 929 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 870 Query: 323 agcgcggcgccaa 335 || || ||||||| Sbjct: 869 agggcagcgccaa 857
>gb|AF022737.1|AF022737 Oryza sativa transmembrane protein mRNA, complete cds Length = 1140 Score = 73.8 bits (37), Expect = 3e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 263 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacggcc 322 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||| | ||| Sbjct: 924 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 865 Query: 323 agcgcggcgccaa 335 || || ||||||| Sbjct: 864 agggcagcgccaa 852
>dbj|AB009665.1| Oryza sativa (japonica cultivar-group) mRNA for water channel protein, complete cds Length = 1116 Score = 73.8 bits (37), Expect = 3e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 263 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacggcc 322 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||| | ||| Sbjct: 927 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 868 Query: 323 agcgcggcgccaa 335 || || ||||||| Sbjct: 867 agggcagcgccaa 855
>gb|BT018400.1| Zea mays clone EL01N0323H01.d mRNA sequence Length = 1154 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 260 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacg 319 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||| | Sbjct: 834 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 775 Query: 320 gccagcgcggcgcc 333 ||||| |||||||| Sbjct: 774 gccagggcggcgcc 761
>gb|BT017668.1| Zea mays clone EL01N0441H09.c mRNA sequence Length = 698 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 276 tcttgaatgggatcgctctgatgaccacctggtggtagatgacggccagcgcggcgcc 333 ||||||| |||||||| ||||||| |||||||||||||||| | |||||||| ||||| Sbjct: 425 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgcc 368
>gb|DQ207683.1| Zea mays cultivar inbred line Mo17 IDP251 marker Length = 824 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 260 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacg 319 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||| | Sbjct: 244 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 303 Query: 320 gccagcgcggcgcc 333 ||||| |||||||| Sbjct: 304 gccagggcggcgcc 317
>gb|DQ207682.1| Zea mays cultivar B73 IDP251 marker Length = 763 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 260 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacg 319 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||| | Sbjct: 533 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 474 Query: 320 gccagcgcggcgcc 333 ||||| |||||||| Sbjct: 473 gccagggcggcgcc 460
>gb|AY243800.1| Zea mays plasma membrane intrinsic protein (PIP1-1) mRNA, complete cds Length = 1086 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 276 tcttgaatgggatcgctctgatgaccacctggtggtagatgacggccagcgcggcgcc 333 ||||||| |||||||| ||||||| |||||||||||||||| | |||||||| ||||| Sbjct: 856 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgcc 799
>emb|X82633.1|ZMTRAPRO Z.mays mRNA for transmembrane protein Length = 1169 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 276 tcttgaatgggatcgctctgatgaccacctggtggtagatgacggccagcgcggcgcc 333 ||||||| |||||||| ||||||| |||||||||||||||| | |||||||| ||||| Sbjct: 913 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgcc 856
>gb|AF326488.1|AF326488 Zea mays plasma membrane integral protein ZmPIP1-4 mRNA, complete cds Length = 1153 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 260 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacg 319 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||| | Sbjct: 984 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 925 Query: 320 gccagcgcggcgcc 333 ||||| |||||||| Sbjct: 924 gccagggcggcgcc 911
>gb|AF326487.1|AF326487 Zea mays plasma membrane integral protein ZmPIP1-3 mRNA, complete cds Length = 1296 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 260 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacg 319 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||| | Sbjct: 979 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 920 Query: 320 gccagcgcggcgcc 333 ||||| |||||||| Sbjct: 919 gccagggcggcgcc 906
>gb|AY103580.1| Zea mays PCO072544 mRNA sequence Length = 1633 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 260 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacg 319 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||| | Sbjct: 1308 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 1249 Query: 320 gccagcgcggcgcc 333 ||||| |||||||| Sbjct: 1248 gccagggcggcgcc 1235
>ref|XM_473480.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 276 tcttgaatgggatcgctctgatgaccacctggtggtagatgacggccagcgcggcgccaa 335 |||||||||| || || |||||||||||||||||||||||| | || || || ||||||| Sbjct: 838 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 779 Query: 336 tg 337 || Sbjct: 778 tg 777
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 276 tcttgaatgggatcgctctgatgaccacctggtggtagatgacggccagcgcggcgccaa 335 |||||||||| || || |||||||||||||||||||||||| | || || || ||||||| Sbjct: 28669 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 28610 Query: 336 tg 337 || Sbjct: 28609 tg 28608
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 276 tcttgaatgggatcgctctgatgaccacctggtggtagatgacggccagcgcggcgccaa 335 |||||||||| || || |||||||||||||||||||||||| | || || || ||||||| Sbjct: 28021443 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 28021384 Query: 336 tg 337 || Sbjct: 28021383 tg 28021382
>gb|AY170841.1| Axonopus compressus plasma membrane MIP protein mRNA, partial cds Length = 423 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 276 tcttgaatgggatcgctctgatgaccacctggtggtagatgacggccagcgcggcgccaa 335 ||||||| ||||| || ||||||| |||||||||||||||| |||| || || ||||||| Sbjct: 412 tcttgaacgggatggccctgatgatcacctggtggtagatggcggctagggcagcgccaa 353 Query: 336 tg 337 || Sbjct: 352 tg 351
>dbj|AK104736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D02, full insert sequence Length = 1163 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 276 tcttgaatgggatcgctctgatgaccacctggtggtagatgacggccagcgcggcgccaa 335 |||||||||| || || |||||||||||||||||||||||| | || || || ||||||| Sbjct: 915 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 856 Query: 336 tg 337 || Sbjct: 855 tg 854
>dbj|AK098849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E16, full insert sequence Length = 1164 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 276 tcttgaatgggatcgctctgatgaccacctggtggtagatgacggccagcgcggcgccaa 335 |||||||||| || || |||||||||||||||||||||||| | || || || ||||||| Sbjct: 916 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 857 Query: 336 tg 337 || Sbjct: 856 tg 855
>dbj|AK065188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E02, full insert sequence Length = 1167 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 276 tcttgaatgggatcgctctgatgaccacctggtggtagatgacggccagcgcggcgccaa 335 |||||||||| || || |||||||||||||||||||||||| | || || || ||||||| Sbjct: 918 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 859 Query: 336 tg 337 || Sbjct: 858 tg 857
>dbj|AK058323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B07, full insert sequence Length = 1462 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 276 tcttgaatgggatcgctctgatgaccacctggtggtagatgacggccagcgcggcgccaa 335 |||||||||| || || |||||||||||||||||||||||| | || || || ||||||| Sbjct: 1214 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 1155 Query: 336 tg 337 || Sbjct: 1154 tg 1153
>gb|U87981.1|SBU87981 Sorghum bicolor membrane intrinsic protein (Mip1) mRNA, partial cds Length = 539 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 261 cagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatgacgg 320 ||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||| | | Sbjct: 359 cagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggcag 300 Query: 321 ccagcgcggcgccaatg 337 |||| || || |||||| Sbjct: 299 ccagggcagcaccaatg 283
>gb|AF141643.1|AF141643 Vitis berlandieri x Vitis rupestris putative aquaporin PIP1-1 (PIP1-1) mRNA, complete cds Length = 1115 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 270 acttggtcttgaatgggatcgctctgatgaccacctggtggta 312 |||||| |||||| || || ||||||||||||||||||||||| Sbjct: 887 acttggacttgaagggaatggctctgatgaccacctggtggta 845
>emb|AJ314584.1|POC314584 Posidonia oceanica mRNA for putative plasma membrane intrinsic protein (pip1a gene) Length = 1139 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 274 ggtcttgaatgggatcgctctgatgaccacctggtggtagat 315 |||||||||||| || ||||||||||| | |||||||||||| Sbjct: 874 ggtcttgaatggaattgctctgatgactatctggtggtagat 833
>emb|AJ310639.1|HVU310639 Hordeum vulgare partial pip1 gene for putative aquaporin Length = 1291 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 304 ctggtggtagatgacggccagcgcggcgcc 333 ||||||||||||| |||||||||||||||| Sbjct: 1291 ctggtggtagatggcggccagcgcggcgcc 1262
>dbj|AB009309.2| Hordeum vulgare HvPIP1;5 mRNA, complete cds Length = 1147 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 290 gctctgatgaccacctggtggtagatgacggccagcgcggcgccaa 335 |||||||||| |||||||||||||| | | ||||| |||||||||| Sbjct: 927 gctctgatgatcacctggtggtagacggctgccagggcggcgccaa 882
>gb|AY547266.2| Ipomoea nil aquaporin-like protein (AQP1) mRNA, complete cds Length = 1189 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgaccacctggtggta 312 |||||||||||| |||||||| || ||||||||||| Sbjct: 937 cttgaatgggatggctctgatcacaacctggtggta 902
>gb|AF188843.1|AF188843 Vitis vinifera cultivar Pinot Noir plasma membrane aquaporin (PIP1a) mRNA, complete cds Length = 1129 Score = 48.1 bits (24), Expect = 0.018 Identities = 36/40 (90%) Strand = Plus / Minus Query: 273 tggtcttgaatgggatcgctctgatgaccacctggtggta 312 |||||||||||||||| |||||||| || | ||||||||| Sbjct: 907 tggtcttgaatgggatggctctgattactatctggtggta 868
>gb|AY611006.1| Xerophyta humilis isolate HC398 PIP1 aquaporin mRNA, partial cds Length = 502 Score = 46.1 bits (23), Expect = 0.072 Identities = 32/35 (91%) Strand = Plus / Minus Query: 278 ttgaatgggatcgctctgatgaccacctggtggta 312 ||||| ||||| ||||||||||| ||||||||||| Sbjct: 176 ttgaaggggattgctctgatgacgacctggtggta 142
>emb|AJ843992.1| Plantago major partial mRNA for aquaporin 2 (aqp2 gene) Length = 1089 Score = 46.1 bits (23), Expect = 0.072 Identities = 32/35 (91%) Strand = Plus / Minus Query: 270 acttggtcttgaatgggatcgctctgatgaccacc 304 ||||| ||||||||||||| |||||||| |||||| Sbjct: 847 acttgttcttgaatgggatagctctgatcaccacc 813
>gb|DQ149581.1| Xerophyta humilis PIP1 aquaporin mRNA, complete cds Length = 1262 Score = 46.1 bits (23), Expect = 0.072 Identities = 32/35 (91%) Strand = Plus / Minus Query: 278 ttgaatgggatcgctctgatgaccacctggtggta 312 ||||| ||||| ||||||||||| ||||||||||| Sbjct: 936 ttgaaggggattgctctgatgacgacctggtggta 902
>emb|AL772318.6| Mouse DNA sequence from clone RP23-77I17 on chromosome 4, complete sequence Length = 249534 Score = 46.1 bits (23), Expect = 0.072 Identities = 26/27 (96%) Strand = Plus / Minus Query: 80 tctgtctgggttcaggtgaatacagag 106 ||||||||||| ||||||||||||||| Sbjct: 225070 tctgtctgggtacaggtgaatacagag 225044
>emb|AJ699398.2| Chenopodium rubrum mRNA for aquaporin PIP1 (PIP1 gene) Length = 1163 Score = 44.1 bits (22), Expect = 0.29 Identities = 37/42 (88%) Strand = Plus / Minus Query: 271 cttggtcttgaatgggatcgctctgatgaccacctggtggta 312 ||||| |||||||||||| |||||||| || | ||||||||| Sbjct: 969 cttggacttgaatgggatggctctgataacaatctggtggta 928
>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210101 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 acatcaaacttggaagacaaa 143 ||||||||||||||||||||| Sbjct: 24157 acatcaaacttggaagacaaa 24177
>gb|AC153943.3| Mus musculus 10 BAC RP24-408O23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 171960 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 acatcaaacttggaagacaaa 143 ||||||||||||||||||||| Sbjct: 121183 acatcaaacttggaagacaaa 121203
>dbj|AB002149.1| Nicotiana excelsior mRNA for water channel protein, complete cds Length = 1064 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 272 ttggtcttgaatgggatcgctctgatgaccacctggtggta 312 |||||||||||||| || |||||||||| | ||||||||| Sbjct: 890 ttggtcttgaatggaatggctctgatgattatctggtggta 850
>ref|NM_130159.2| Arabidopsis thaliana PIP1B; water channel AT2G45960 (PIP1B) mRNA, complete cds Length = 1259 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 988 cttgaatgggatggctctgatgac 965
>ref|XM_521983.1| PREDICTED: Pan troglodytes similar to expressed sequence AI841794 (LOC466584), mRNA Length = 1269 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tgctggatttgcacaacaac 30 |||||||||||||||||||| Sbjct: 407 tgctggatttgcacaacaac 426
>ref|NM_001005210.1| Homo sapiens leucine rich repeat containing 55 (LRRC55), mRNA Length = 3797 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tgctggatttgcacaacaac 30 |||||||||||||||||||| Sbjct: 554 tgctggatttgcacaacaac 573
>gb|AF499725.1| Thellungiella halophila plasma membrane intrinsic protein 1B-like protein mRNA, complete cds Length = 833 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 671 cttgaatgggattgctctgatgac 648
>emb|CR339052.6| Zebrafish DNA sequence from clone CH211-218E6 in linkage group 10, complete sequence Length = 127879 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cagaaagaaattcactcaga 212 |||||||||||||||||||| Sbjct: 53978 cagaaagaaattcactcaga 53997
>gb|AC007528.5| Homo sapiens 12 BAC RP11-473N11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188451 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 cagagcaagagcaagagtag 121 |||||||||||||||||||| Sbjct: 155822 cagagcaagagcaagagtag 155841
>emb|AL117377.18|HSJ1037B9 Human DNA sequence from clone RP5-1037B9 on chromosome 20p12.1-13 Contains STSs, GSSs and a putative CpG island, complete sequence Length = 82183 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 cacatcaaacttggaagaca 141 |||||||||||||||||||| Sbjct: 72891 cacatcaaacttggaagaca 72872
>emb|Z17424.1|ATORFA Arabidopsis thaliana mRNA for PIP1b protein Length = 1064 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 908 cttgaatgggatggctctgatgac 885
>emb|X95640.1|BOMIPBTCP B.oleracea mRNA for transmembrane channel protein (mipB) Length = 1114 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 867 cttgaatgggatggctctgatgac 844
>emb|X95639.1|BOMIPATCP B.oleracea mRNA for transmembrane channel protein (mipA) Length = 1104 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 886 cttgaatgggatggctctgatgac 863
>gb|AY091254.1| Arabidopsis thaliana putative aquaporin protein (At2g45960) mRNA, complete cds Length = 892 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 849 cttgaatgggatggctctgatgac 826
>emb|X68293.1|ATRNATPR A.thaliana mRNA for transmembrane protein A Length = 1105 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 903 cttgaatgggatggctctgatgac 880
>gb|AY063931.1| Arabidopsis thaliana putative aquaporin, plasma membrane intrinsic protein 1B (At2g45960) mRNA, complete cds Length = 1077 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 cccccatcagaaagaaattcactc 209 ||||||||||||| |||||||||| Sbjct: 1961051 cccccatcagaaacaaattcactc 1961028
>emb|AL031227.1|DMC66A1 Drosophila melanogaster cosmid 66A1 Length = 34127 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tgaccacctggtggtagatg 316 |||||||||||||||||||| Sbjct: 9156 tgaccacctggtggtagatg 9137 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tgaccacctggtggtagatg 316 |||||||||||||||||||| Sbjct: 5054 tgaccacctggtggtagatg 5035
>gb|AC023747.4| Drosophila melanogaster X BAC RP98-38L1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167097 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tgaccacctggtggtagatg 316 |||||||||||||||||||| Sbjct: 34675 tgaccacctggtggtagatg 34656
>gb|AC182472.3| Pan troglodytes BAC clone CH251-394C9 from chromosome 19, complete sequence Length = 165954 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 catctttctttgtagcagcagctt 266 |||||||| ||||||||||||||| Sbjct: 108793 catctttcattgtagcagcagctt 108770
>dbj|AK127591.1| Homo sapiens cDNA FLJ45686 fis, clone FCBBF3012443 Length = 3797 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tgctggatttgcacaacaac 30 |||||||||||||||||||| Sbjct: 554 tgctggatttgcacaacaac 573
>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete sequence Length = 101647 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 15226 cttgaatgggatggctctgatgac 15249
>ref|NM_131946.3| Drosophila melanogaster CG12184-RA (CG12184), mRNA Length = 3292 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tgaccacctggtggtagatg 316 |||||||||||||||||||| Sbjct: 2313 tgaccacctggtggtagatg 2294
>gb|AC016493.14| Homo sapiens chromosome 18, clone RP11-58G13, complete sequence Length = 163936 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 ttggaagacaaattggaatt 151 |||||||||||||||||||| Sbjct: 159892 ttggaagacaaattggaatt 159873
>gb|AF141898.1|AF141898 Vitis berlandieri x Vitis rupestris putative aquaporin PIP1-2 (PIP1-2) mRNA, complete cds Length = 1154 Score = 40.1 bits (20), Expect = 4.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgaccacctggtggta 312 |||||||||||| |||||||| || | ||||||||| Sbjct: 911 cttgaatgggatggctctgattactatctggtggta 876
>gb|AC079064.6| Homo sapiens chromosome 11, clone RP11-485O14, complete sequence Length = 164009 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 catcagaaagaaattcactcagaa 213 ||||||||| |||||||||||||| Sbjct: 52709 catcagaaaaaaattcactcagaa 52732
>gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, complete sequence Length = 166503 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 ttggaagacaaattggaatt 151 |||||||||||||||||||| Sbjct: 50150 ttggaagacaaattggaatt 50131
>dbj|AK222086.1| Arabidopsis thaliana mRNA for aquaporin, partial cds, clone: RAFL22-84-C08 Length = 318 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 111 cttgaatgggatggctctgatgac 88
>gb|AY051507.1| Drosophila melanogaster GH15731 full length cDNA Length = 2897 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tgaccacctggtggtagatg 316 |||||||||||||||||||| Sbjct: 1897 tgaccacctggtggtagatg 1878
>gb|AY049238.1| Arabidopsis thaliana clone RAFL08-10-H13(R13205), mRNA sequence Length = 1913 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>gb|AF299051.1|AF299051 Brassica oleracea aquaporin PIP1b2 mRNA, complete cds Length = 1101 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 868 cttgaatgggatggctctgatgac 845
>gb|AF299050.1|AF299050 Brassica oleracea aquaporin PIP1b1 mRNA, complete cds Length = 1084 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 885 cttgaatgggatggctctgatgac 862
>emb|BX820173.1|CNS0A8G3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS86ZH06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1084 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 889 cttgaatgggatggctctgatgac 866
>emb|BX819664.1|CNS0A8JV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS13ZG09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 679 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 522 cttgaatgggatggctctgatgac 499
>emb|BX820969.1|CNS0A7WJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH87ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1036 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 894 cttgaatgggatggctctgatgac 871
>emb|BX819791.1|CNS0A7WA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1060 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 881 cttgaatgggatggctctgatgac 858
>gb|AC011500.7| Homo sapiens chromosome 19 clone CTB-60E11, complete sequence Length = 200430 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 catctttctttgtagcagcagctt 266 |||||||| ||||||||||||||| Sbjct: 139931 catctttcattgtagcagcagctt 139908
>gb|AY048294.1| Arabidopsis thaliana At2g45960/F4I18.6 mRNA, complete cds Length = 1052 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>emb|Z17399.1|ATORFB Arabidopsis thaliana PIP1b gene Length = 2773 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 1547 cttgaatgggatggctctgatgac 1524
>gb|AE003431.5| Drosophila melanogaster chromosome X, section 15 of 74 of the complete sequence Length = 310993 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 tgaccacctggtggtagatg 316 |||||||||||||||||||| Sbjct: 239024 tgaccacctggtggtagatg 239043
>dbj|AP001786.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-176J24, complete sequences Length = 171744 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tgctggatttgcacaacaac 30 |||||||||||||||||||| Sbjct: 92890 tgctggatttgcacaacaac 92909
>gb|DQ151348.1| Petromyzon marinus clone T.D8 variable lymphocyte receptor diversity region (VLR) mRNA, partial cds Length = 534 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tgctggatttgcacaacaac 30 |||||||||||||||||||| Sbjct: 263 tgctggatttgcacaacaac 282
>gb|AF004293.1|AF004293 Brassica rapa aquaporin (MOD) mRNA, complete cds Length = 900 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 867 cttgaatgggatggctctgatgac 844
>dbj|AB030695.1| Raphanus sativus PAQ1b mRNA for plasma membrane aquaporin 1b, complete cds Length = 1053 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 cttgaatgggatcgctctgatgac 300 |||||||||||| ||||||||||| Sbjct: 870 cttgaatgggatggctctgatgac 847 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,480,741 Number of Sequences: 3902068 Number of extensions: 3480741 Number of successful extensions: 66125 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65984 Number of HSP's gapped (non-prelim): 141 length of query: 337 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 315 effective length of database: 17,147,199,772 effective search space: 5401367928180 effective search space used: 5401367928180 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)