ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet62a03 |
|---|---|
| Clone Library Name | barley_pub |
>RD22_ARATH (Q08298) Dehydration-responsive protein RD22 precursor| Length = 392 Score = 65.1 bits (157), Expect = 4e-11 Identities = 25/35 (71%), Positives = 30/35 (85%) Frame = -3 Query: 358 DTAGWNPGHVAFQVLKVKPGGAPVCHFLPQDHVVW 254 +T+ WNP H+AF+VLKVKPG PVCHFLP+ HVVW Sbjct: 355 NTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVW 389
>JP650_ARATH (P92990) Probable polygalacturonase non-catalytic subunit JP650| precursor (Aromatic-rich glycoprotein JP650) Length = 626 Score = 38.5 bits (88), Expect = 0.004 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = -3 Query: 358 DTAGWNPGHVAFQVLKVKPGGAPVCHFLPQDHVVW 254 DT+ W P H AF L KPG VCH++ ++ + W Sbjct: 588 DTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNW 622
>Y639_ARATH (O80760) Probable polygalacturonase non-catalytic subunit At1g60390| precursor (Aromatic-rich glycoprotein At1g60390) Length = 624 Score = 37.4 bits (85), Expect = 0.009 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3 Query: 358 DTAGWNPGHVAFQVLKVKPGGAPVCHFLPQDHVVW 254 DT+ W+P H AF L PG VCH++ ++ + W Sbjct: 586 DTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTW 620
>GP1_LYCES (Q40161) Polygalacturonase-1 non-catalytic beta subunit precursor| (AroGP1) (Polygalacturonase converter) (PG converter) Length = 630 Score = 37.0 bits (84), Expect = 0.012 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -3 Query: 358 DTAGWNPGHVAFQVLKVKPGGAPVCHFLPQDHVVW 254 DT+ W P H AF L PG VCH++ ++ + W Sbjct: 592 DTSSWGPSHGAFVALGSGPGKIEVCHWIFENDMTW 626
>EA92_VICFA (P21747) Embryonic abundant protein USP92 precursor| Length = 268 Score = 36.2 bits (82), Expect = 0.020 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -3 Query: 358 DTAGWNPGHVAFQVLKVKPGGAPVCHFLPQDHVVW 254 DT G NP + ++ L+V PG PVCHF+ W Sbjct: 223 DTRGMNP-ELLYEALEVTPGTVPVCHFIGNKAAAW 256
>EA30_VICFA (P21745) Embryonic abundant protein VF30.1 precursor| Length = 268 Score = 36.2 bits (82), Expect = 0.020 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -3 Query: 358 DTAGWNPGHVAFQVLKVKPGGAPVCHFLPQDHVVW 254 DT G NP + ++ L+V PG PVCHF+ W Sbjct: 223 DTRGMNP-ELLYEALEVTPGTVPVCHFIGNKAAAW 256
>GP3_LYCES (P93218) Polygalacturonase non-catalytic subunit AroGP3 precursor| Length = 632 Score = 36.2 bits (82), Expect = 0.020 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -3 Query: 358 DTAGWNPGHVAFQVLKVKPGGAPVCHFLPQDHVVW 254 DT+ W P H AF L PG VCH++ ++ + W Sbjct: 594 DTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTW 628
>GP2_LYCES (P93217) Polygalacturonase non-catalytic subunit AroGP2 precursor| Length = 629 Score = 35.8 bits (81), Expect = 0.026 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -3 Query: 358 DTAGWNPGHVAFQVLKVKPGGAPVCHFLPQDHVVW 254 DT+ W P H AF L PG VCH++ ++ + W Sbjct: 591 DTSSWGPRHGAFIALGSGPGKIEVCHWIFENDMTW 625
>JP630_ARATH (P92982) Probable polygalacturonase non-catalytic subunit JP630| precursor (Aromatic-rich glycoprotein JP630) Length = 622 Score = 35.4 bits (80), Expect = 0.035 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -3 Query: 358 DTAGWNPGHVAFQVLKVKPGGAPVCHFLPQDHVVW 254 DT+ W H AF +L +PG VCH++ ++ + W Sbjct: 584 DTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNW 618
>SIM2_HUMAN (Q14190) Single-minded homolog 2| Length = 667 Score = 33.1 bits (74), Expect = 0.17 Identities = 19/48 (39%), Positives = 21/48 (43%) Frame = -2 Query: 356 HGRLEPGARRVPGAQGEARRRAGVPLPAAGPRCLDPPRLMKPGRPAPL 213 H R EP A+ AR A + L A P C PP PG PA L Sbjct: 548 HYREEPALGPAKAARQAARDGARLALARAAPECCAPPTPEAPGAPAQL 595
>SVF30_VICFA (P09059) Unknown seed protein 30.1 precursor (VF30.1)| Length = 268 Score = 32.3 bits (72), Expect = 0.29 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 358 DTAGWNPGHVAFQVLKVKPGGAPVCHFLPQDHVVW 254 DT G NP + ++ L+V G PVCHF+ W Sbjct: 223 DTRGMNP-ELLYEALEVTLGTVPVCHFIGNKAAAW 256
>EA87_VICFA (P21746) Embryonic abundant protein USP87 precursor| Length = 268 Score = 32.3 bits (72), Expect = 0.29 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 358 DTAGWNPGHVAFQVLKVKPGGAPVCHFLPQDHVVW 254 DT G NP + ++ L+V G PVCHF+ W Sbjct: 223 DTRGMNP-ELLYEALEVTLGTVPVCHFIGNKAAAW 256
>MYPR_RAT (P60203) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 31.6 bits (70), Expect = 0.50 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = +3 Query: 183 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKWHTGAPPGFTLSTWNAT 332 G S TV G + RGS G HQ ++ C KW G P F T+ T Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW-LGHPDKFVGITYALT 159
>MYPR_RABIT (P47789) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 31.6 bits (70), Expect = 0.50 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = +3 Query: 183 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKWHTGAPPGFTLSTWNAT 332 G S TV G + RGS G HQ ++ C KW G P F T+ T Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW-LGHPDKFVGITYALT 159
>MYPR_MOUSE (P60202) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 31.6 bits (70), Expect = 0.50 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = +3 Query: 183 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKWHTGAPPGFTLSTWNAT 332 G S TV G + RGS G HQ ++ C KW G P F T+ T Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW-LGHPDKFVGITYALT 159
>MYPR_HUMAN (P60201) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 31.6 bits (70), Expect = 0.50 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = +3 Query: 183 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKWHTGAPPGFTLSTWNAT 332 G S TV G + RGS G HQ ++ C KW G P F T+ T Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW-LGHPDKFVGITYALT 159
>MYPR_CANFA (P23294) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 31.6 bits (70), Expect = 0.50 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = +3 Query: 183 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKWHTGAPPGFTLSTWNAT 332 G S TV G + RGS G HQ ++ C KW G P F T+ T Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW-LGHPDKFVGITYALT 159
>MYPR_BOVIN (P04116) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 31.6 bits (70), Expect = 0.50 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = +3 Query: 183 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKWHTGAPPGFTLSTWNAT 332 G S TV G + RGS G HQ ++ C KW G P F T+ T Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW-LGHPDKFVGITYALT 159
>MYPR_MACFA (Q8HXW7) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 31.2 bits (69), Expect = 0.65 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = +3 Query: 183 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKWHTGAPPGFTLSTWNAT 332 G S TV G + RGS G HQ ++ C KW G P F T+ T Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVRHCLGKW-LGHPDKFVGITYALT 159
>MILK2_HUMAN (Q8IY33) MICAL-like protein 2| Length = 904 Score = 31.2 bits (69), Expect = 0.65 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -2 Query: 353 GRLEPGARRVPGAQG--EARRRAGV--PLPAAGPRCLDPPRLMKPGRPAPLVSTIYSCAL 186 GR P VP +Q EA + + + PL ++ PR L P M+P P ST + AL Sbjct: 472 GRPSPATAAVPSSQPKTEAPQASPLAKPLQSSSPRVLGLPSRMEPPAPLSTSSTSQASAL 531 Query: 185 P 183 P Sbjct: 532 P 532
>HISX_SHEON (Q8EFB1) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 438 Score = 31.2 bits (69), Expect = 0.65 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Frame = -2 Query: 272 AGPRC------LDPPRLMKPGRPAPLVSTIYSCALPYIMVSCTLASLYTFPLFGTYCVLM 111 AG RC ++ L PG APL+ST+ ALP + C L + P V Sbjct: 118 AGVRCELRSEPIEKVGLYIPGGSAPLISTVLMLALPATIAGCEQRVLVSPPPINDAIVYA 177 Query: 110 AWRCQYRQLVRSG 72 A C ++ + G Sbjct: 178 ANVCGITEIYQVG 190
>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%) Frame = -2 Query: 344 EPGARRVPGAQGEARRRA-----GVPLPAAGPRCLDPPRLMKPGRP 222 +PGA +PGA+GE ++ G+P P P P + KPG P Sbjct: 168 KPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGP 213
>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100| Length = 1038 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 284 PLPAAGPRCLDPPRLMKPGRPAPLVSTI 201 P A+GP P M+PG+P+P VS I Sbjct: 57 PFTASGPPPAPPVGTMRPGQPSPFVSQI 84
>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch 3)| [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2319 Score = 29.6 bits (65), Expect = 1.9 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Frame = -2 Query: 329 RVPGAQGEARRRAGVPLP--AAGPRCLDPPRLMKP----GRPAPLVSTIYSCALPYIMVS 168 RV + E + G+P A GPRC PP L P R +P +T SCA + Sbjct: 1290 RVARSCRELQCPVGIPCQQTARGPRCACPPGLSGPSCRVSRASPSGATNTSCAATPCLHG 1349 Query: 167 CTLASLYTFPLFGTYC 120 + + + P F C Sbjct: 1350 GSCLPVQSVPFFRCVC 1365
>YDIM_ECOLI (P76197) Inner membrane transport protein ydiM| Length = 404 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = -2 Query: 263 RCLDPPRLMKPGRPAPLV-----STIYSCALPYIMVSCTLASLYTFPLFGTYCVLMAWRC 99 RC PP PGR P++ ST + C++ + +LY + T+ ++ W Sbjct: 180 RCTFPPH---PGRRLPVIKKTTSSTEHRCSI----IDLASYTLYGYISMATFYLVSQWLA 232 Query: 98 QYRQLV 81 QY Q V Sbjct: 233 QYGQFV 238
>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%) Frame = -2 Query: 344 EPGARRVPGAQGEARRRA-----GVPLPAAGPRCLDPPRLMKPGRP 222 +PGA +PGA+GE + G+P P P P + KPG P Sbjct: 168 KPGAMGMPGAKGEIGPKGEIGPMGIPGPQGPPGPHGLPGIGKPGGP 213
>CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor| Length = 743 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%) Frame = -2 Query: 344 EPGARRVPGAQGEARRRA-----GVPLPAAGPRCLDPPRLMKPGRP 222 +PGA +PGA+GE + G+P P P P + KPG P Sbjct: 168 KPGAMGMPGAKGEIGPKGEIGPMGIPGPQGPPGPHGLPGIGKPGGP 213
>MYSC_ACACA (P10569) Myosin IC heavy chain| Length = 1168 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/42 (40%), Positives = 19/42 (45%) Frame = -2 Query: 341 PGARRVPGAQGEARRRAGVPLPAAGPRCLDPPRLMKPGRPAP 216 PG R +P G A R G P P AG PP + G P P Sbjct: 1095 PGGRGMPAPGGAAPRGRGAPPPGAG----GPPGGGRGGAPPP 1132
>NOTC3_MOUSE (Q61982) Neurogenic locus notch homolog protein 3 precursor (Notch 3)| [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2318 Score = 29.3 bits (64), Expect = 2.5 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Frame = -2 Query: 329 RVPGAQGEARRRAGVPLP--AAGPRCLDPPRLMKP----GRPAPLVSTIYSCALPYIMVS 168 RV + E + G+P A GPRC PP L P R +P +T SCA + Sbjct: 1289 RVARSCRELQCPVGIPCQQTARGPRCACPPGLSGPSCRVSRASPSGATNASCASAPCLHG 1348 Query: 167 CTLASLYTFPLFGTYC 120 + + + P F C Sbjct: 1349 GSCLPVQSVPFFRCVC 1364
>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2| Length = 953 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -2 Query: 341 PGARRVPGAQGEARRRAGVPLPAAGPRCLDPPRLMKPGRPAP 216 P A + P A+ A + P PAA P+ P KP P P Sbjct: 61 PAASQEPKAKKPAAPKPAAPKPAATPQQAAKPAAPKPAAPKP 102
>PTF1A_MOUSE (Q9QX98) Pancreas transcription factor 1 subunit alpha| (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48) Length = 324 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = -2 Query: 284 PLPAAGPRCLDPPRLMKPGRPAPLVSTIYSC 192 P P+A P L PP L PG P VS Y C Sbjct: 72 PAPSAAPHALAPPPLGDPGEPEDNVS--YCC 100
>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)| Length = 1362 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 7/52 (13%) Frame = -2 Query: 350 RLEPGARRVPGAQGEA-------RRRAGVPLPAAGPRCLDPPRLMKPGRPAP 216 R EPG+R +PGA G A R A P+ A GP D R +PG P Sbjct: 397 RGEPGSRGLPGADGRAGVMGPAGNRGASGPVGAKGPNG-DAGRPGEPGLMGP 447
>SEPT9_HUMAN (Q9UHD8) Septin-9 (MLL septin-like fusion protein) (MLL septin-like| fusion protein MSF-A) (Ovarian/Breast septin) (Ov/Br septin) (Septin D1) Length = 586 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%) Frame = -2 Query: 356 HGRLEPGARRVPG-----AQGEARRRAGV--PLPAAGPRCLDPPRLMKPGRPAPL 213 H R+EP A +VP A A +R + P PA P P + ++ PAP+ Sbjct: 162 HRRMEPPASKVPEVPTAPATDAAPKRVEIQMPKPAEAPTAPSPAQTLENSEPAPV 216
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 28.5 bits (62), Expect = 4.2 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -2 Query: 350 RLEPGARRVPGAQ-GEARRRAGVPLPAAGPRCLDPPRLMKPGRPA 219 R PGA R PG + GE R G P P PR D R G PA Sbjct: 251 RRSPGAARDPGPEPGEERGGGGKP-PLGSPRATDGNRDPGAGVPA 294
>MERD_SHIFL (P20102) HTH-type transcriptional regulator merD (Mercuric| resistance protein merD) Length = 120 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +2 Query: 224 VDRASSAAAGPDNVVLRQEVAHRRAAGLHLEHLERDVPRVPAGR 355 +D A A A V+RQ V RRAA L HL+ + +PA R Sbjct: 73 LDAADGAQAAAQLAVVRQLVERRRAA---LAHLDAQLASMPAER 113
>COBB_STRCO (Q9RJ16) Cobyrinic acid A,C-diamide synthase| Length = 486 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -2 Query: 284 PLPAAGPRCLDPPRLMKPGRPAP 216 PLP P P L++PGRP P Sbjct: 258 PLPVPSPGAAPPDPLVRPGRPRP 280
>SAM68_RAT (Q91V33) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Frame = -2 Query: 302 RRRAGVPLPAAGPRC---LDPPRLMKPGRPAPLVSTIYSCALPYIMVSCTLAS 153 R R G P G R PP L+ P P P + + S P + S T A+ Sbjct: 43 RSRGGGGGPRGGARASPATQPPPLLPPSNPGPDATVVGSAPTPLLPPSATAAA 95
>S5A1_HUMAN (P18405) 3-oxo-5-alpha-steroid 4-dehydrogenase 1 (EC 1.3.99.5)| (Steroid 5-alpha-reductase 1) (SR type 1) (S5AR) Length = 259 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -2 Query: 269 GPRCLDPPRLMKPGRPAPLVSTIYSCALPYIMVSC 165 G RCL P LM+ G+P PL+ +C + + +C Sbjct: 96 GHRCLIYPFLMRGGKPMPLL----ACTMAIMFCTC 126
>CRCB2_CORGL (Q8NMM8) Protein crcB homolog 2| Length = 108 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Frame = -2 Query: 233 PGRPAPLVSTIYSCALPYIMVSCTLASLYTFPLFGTYC-VLMAWRCQYRQL 84 PG+ A L + +C VS L LYT L +C L W ++L Sbjct: 25 PGKRATLAANTLACLAGGFFVSLDLPHLYTVLLIAGFCGALSTWSTLAKEL 75
>TRRAP_HUMAN (Q9Y4A5) Transformation/transcription domain-associated protein| (350/400 kDa PCAF-associated factor) (PAF350/400) (STAF40) (Tra1 homolog) Length = 3859 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/43 (39%), Positives = 18/43 (41%) Frame = -2 Query: 341 PGARRVPGAQGEARRRAGVPLPAAGPRCLDPPRLMKPGRPAPL 213 PG P A G A A VP P P PP P PAP+ Sbjct: 485 PGVPTAPAAPGPAPSPAPVPAPPPPP---PPPPPATPVTPAPV 524
>CBL_MOUSE (P22682) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal| transduction protein CBL) (Proto-oncogene c-CBL) (Casitas B-lineage lymphoma proto-oncogene) Length = 913 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/65 (26%), Positives = 27/65 (41%) Frame = -2 Query: 341 PGARRVPGAQGEARRRAGVPLPAAGPRCLDPPRLMKPGRPAPLVSTIYSCALPYIMVSCT 162 P + PG QGE+ P + P + P +P RP + +C + SCT Sbjct: 680 PMPKLPPGEQGESEEDTEYMTPTSRPVGVQKP---EPKRPLEATQSSRACDCDQQIDSCT 736 Query: 161 LASLY 147 ++Y Sbjct: 737 YEAMY 741
>BCKD_HUMAN (O14874) [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]]| kinase, mitochondrial precursor (EC 2.7.11.4) (Branched-chain alpha-ketoacid dehydrogenase kinase) (BCKDHKIN) (BCKD-kinase) Length = 412 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -1 Query: 261 LSGPAAADEARSTRAVGKHHIQL 193 L GPA A ARST A HH+++ Sbjct: 20 LLGPALALRARSTSATDTHHVEM 42
>NPAS1_HUMAN (Q99742) Neuronal PAS domain protein 1 (Neuronal PAS1) (Member of| PAS protein 5) (MOP5) Length = 590 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -2 Query: 302 RRRAGVPLPAAGPRCLDPPRLMKPGR--PAPLVSTIY 198 RR A + P G R PP + PGR PA LVS ++ Sbjct: 98 RRFAALGAPPWGLRAAGPPAGLAPGRRGPAALVSEVF 134
>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (CIRL-1) Length = 1515 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = -2 Query: 290 GVPLPAAGPRCLDPPRLMKPGRPAPLVSTIYSCALPYIMVSCTLASLYTFPL 135 G P P+AGP P RP PL ST A P A L T P+ Sbjct: 397 GPPDPSAGPATSPPLSTTTTARPTPLTST----ASPAATTPLRRAPLTTHPV 444
>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) Length = 1472 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = -2 Query: 290 GVPLPAAGPRCLDPPRLMKPGRPAPLVSTIYSCALPYIMVSCTLASLYTFPL 135 G P P+AGP P RP PL ST A P A L T P+ Sbjct: 397 GPPDPSAGPATSPPLSTTTTARPTPLTST----ASPAATTPLRRAPLTTHPV 444
>TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) (p144) (Formin-binding protein 28) (FBP 28) Length = 1100 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = -2 Query: 344 EPGARRVPGAQGEARRRAGVPLPAAGPRCLDPPRLMKPGRPAPL--VSTIYSCALPYIMV 171 +P + +P A + + +PA P + P R+ PG P PL V+ + + PY+ Sbjct: 336 QPHPQTLPPAVPHSVPQPAAAIPAFPPVMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKT 395 Query: 170 SCT 162 T Sbjct: 396 VAT 398
>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 699 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = -2 Query: 341 PGARRVPGAQGEARRRAGVPLPAAGPRCLDPPRLMKPGRPAP 216 PGA VPG QG + G P P + P PG+P P Sbjct: 279 PGAAGVPGPQGPVGAK-GEPGLRGPPGLIGPVGYGMPGKPGP 319
>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin| receptor 1) (Lectomedin-2) (Fragment) Length = 1406 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = -2 Query: 290 GVPLPAAGPRCLDPPRLMKPGRPAPLVSTIYSCALPYIMVSCTLASLYTFPL 135 G P P+AGP P RP PL ST A P A L T P+ Sbjct: 332 GPPDPSAGPATSPPLSTTTTARPTPLTST----ASPAATTPLRRAPLTTHPV 379
>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (Lectomedin-2) Length = 1474 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = -2 Query: 290 GVPLPAAGPRCLDPPRLMKPGRPAPLVSTIYSCALPYIMVSCTLASLYTFPL 135 G P P+AGP P RP PL ST A P A L T P+ Sbjct: 397 GPPDPSAGPATSPPLSTTTTARPTPLTST----ASPAATTPLRRAPLTTHPV 444
>PTF1A_RAT (Q64305) Pancreas transcription factor 1 subunit alpha| (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48) Length = 326 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -2 Query: 284 PLPAAGPRCLDPPRLMKPGRP 222 P P+A P L PP L PG P Sbjct: 72 PAPSAAPHALAPPPLGDPGEP 92
>POL_RSFFV (P03358) Pol polyprotein [Contains: Reverse transcriptase (EC| 2.7.7.49)] (Fragment) Length = 116 Score = 27.3 bits (59), Expect = 9.4 Identities = 20/53 (37%), Positives = 25/53 (47%) Frame = -3 Query: 346 WNPGHVAFQVLKVKPGGAPVCHFLPQDHVVWTRRG**SPVDPRRW*APYTVVL 188 W P A+Q +P V H VW RR + + PR W APYTV+L Sbjct: 14 WRPLAAAYQHQLDRP---IVPHPFRLGDTVWVRRHQTNNLQPR-WKAPYTVLL 62
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -2 Query: 284 PLPAAGPRCLDPPRLMKPGRPAPLVSTIYSCALPYI 177 P+P A P PP P PAP V +I S + P I Sbjct: 122 PIPGAVPSVAAPPIPNAPLSPAPAVPSIPSSSAPPI 157
>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor| Length = 920 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/41 (36%), Positives = 17/41 (41%) Frame = -2 Query: 344 EPGARRVPGAQGEARRRAGVPLPAAGPRCLDPPRLMKPGRP 222 +PG R PG G R + L P C P PGRP Sbjct: 381 DPGKRGPPGPPGPPGPRGTIGLQDGDPLC---PNACPPGRP 418
>TRIM7_HUMAN (Q9C029) Tripartite motif protein 7 (Glycogenin-interacting| protein) (RING finger protein 90) Length = 511 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = -2 Query: 341 PGARRVPGAQGEARRRAGVPLPAAGPRCLDP--PRLMKPGRPAPLVSTI 201 PGA G+ G A R PLP P+C +P P ++P R V+T+ Sbjct: 60 PGA----GSVGAATRAPPFPLPC--PQCREPARPSQLRPNRQLAAVATL 102
>SYV_BRUSU (Q8G0Y3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 910 Score = 27.3 bits (59), Expect = 9.4 Identities = 21/77 (27%), Positives = 27/77 (35%) Frame = -1 Query: 249 AAADEARSTRAVGKHHIQLCFALYYGILHPSIAIYISLVWYLLCFDGVALPVSPACTEWX 70 AA EA++T A C Y +LHP + +W L +G A EW Sbjct: 692 AAKAEAQATAAY-------CLDQVYKLLHPFMPFMTEELWSLTASEGKKRDTVLALAEWP 744 Query: 69 XXXXXXXXXXDAINRLV 19 IN LV Sbjct: 745 ELSFEDEDAAADINWLV 761
>SYV_BRUME (Q8YGX8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 910 Score = 27.3 bits (59), Expect = 9.4 Identities = 21/77 (27%), Positives = 27/77 (35%) Frame = -1 Query: 249 AAADEARSTRAVGKHHIQLCFALYYGILHPSIAIYISLVWYLLCFDGVALPVSPACTEWX 70 AA EA++T A C Y +LHP + +W L +G A EW Sbjct: 692 AAKAEAQATAAY-------CLDQVYKLLHPFMPFMTEELWSLTASEGKKRDTVLALAEWP 744 Query: 69 XXXXXXXXXXDAINRLV 19 IN LV Sbjct: 745 ELSFEDEDAAADINWLV 761
>YWIS_WHEAT (P14723) Hypothetical 16 kDa protein in middle repetitive insertion| sequence WIS1 Length = 151 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -2 Query: 287 VPLPAAGPRCLDPPRLMKPGRPAPLVSTI 201 VP+P RC DPP P P+P +S + Sbjct: 50 VPVPHHCLRCCDPPPPPPPPTPSPSISLL 78
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 27.3 bits (59), Expect = 9.4 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = -2 Query: 356 HGRLEPGARRVPGAQGEARRRAGVPL---PAAGPRCLDPPRLMKPGRPAPLVSTIYSCAL 186 HG PG+RR+ G G R V L PAA P PP + R +P S + S A Sbjct: 77 HGASRPGSRRLLGVCGPPRPFVVVLLALAPAATPARACPPGV----RASPPRSGVSSSAR 132 Query: 185 P 183 P Sbjct: 133 P 133
>SKI_XENLA (Q02225) Ski oncogene (C-ski)| Length = 717 Score = 27.3 bits (59), Expect = 9.4 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = +2 Query: 116 KHNRYQTREMYIAMLGCKIP*YRAKHNCIWCLPTARVDRASSAA--AGPDNVVLRQEVAH 289 K Q R++ + GC+ R K++ A+++ S A D LR ++ H Sbjct: 627 KRELEQARQIRVCDKGCEAGRIRVKYS-------AQIEELQSKLQHAENDREQLRTDLVH 679 Query: 290 RRAAGLHLEHLERDV 334 R A HLE + +D+ Sbjct: 680 EREAREHLEKVVKDL 694
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = -2 Query: 335 ARRVPGAQGEARRRAGVPLPAAGPRCLDPPRLMKPG-RPAP 216 A + P AQ A A P P+ GPR P KP RPAP Sbjct: 102 APKAPAAQQPAAPSAPAPAPSQGPRPTPGP---KPAPRPAP 139
>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1516 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Frame = -2 Query: 341 PGARRVPGAQGEARRR-----AGVPLPAAGPRCLDPPRLMKPGRPA 219 PG + GA G A R AG P PA P PP PG PA Sbjct: 744 PGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPA 789
>BCTN7_SHEEP (P50415) Bactenecin-7 precursor (Bac7) (Cathelicidin-3) (PR-59)| Length = 190 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -2 Query: 350 RLEPGARRVPGAQGEARRRA-GVPLPAAGPRCLDPPRLM--KPGRPAP 216 RL P R+P + R R +PLP PR + P L+ +P RP P Sbjct: 132 RLRPRRPRLPRPRPRPRPRPRSLPLPRPQPRRIPRPILLPWRPPRPIP 179
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/46 (32%), Positives = 19/46 (41%) Frame = -2 Query: 353 GRLEPGARRVPGAQGEARRRAGVPLPAAGPRCLDPPRLMKPGRPAP 216 GR P A + + +G P P+A PR P R G P P Sbjct: 166 GRSSPSAASPASSSSGSSGSSGSPGPSAAPRRWSPARGDPVGEPGP 211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,644,786 Number of Sequences: 219361 Number of extensions: 1240415 Number of successful extensions: 4072 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 3787 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4059 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
