ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet61h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Z50799.1|HVHHMG12 H.vulgare mRNA for HMG1/2-like protein 168 3e-39
2emb|Z11540.1|TAHMGW T.aestivum mRNA for high mobility group prot... 147 1e-32
3gb|L28094.1|BLYCDNA Barley mRNA sequence 147 1e-32
4gb|AY262827.1| Oryza sativa (indica cultivar-group) HMGB1 gene, ... 86 4e-14
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 86 4e-14
6gb|AF541859.1| Oryza sativa (indica cultivar-group) HMG1 protein... 86 4e-14
7dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic D... 86 4e-14
8gb|AF093632.1|AF093632 Oryza sativa high mobility group protein ... 86 4e-14
9emb|X66077.1|ZMMNB1B Z.mays MNB1b mRNA for DNA-binding protein 82 5e-13
10emb|X58282.1|ZMHMGPMR Maize mRNA for a high mobility group protein 82 5e-13
11emb|AJ131373.1|ZMA131373 Zea mays hmga gene, exons 1-7 82 5e-13
12dbj|AK068898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 5e-13
13dbj|AK062226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 5e-13
14gb|AY103575.1| Zea mays PCO080122 mRNA sequence 82 5e-13
15emb|BX842700.35| Zebrafish DNA sequence from clone DKEY-2P18 in ... 40 1.9
16gb|AC004942.1| Homo sapiens PAC clone RP5-981B16 from 7, complet... 40 1.9
17emb|AL732595.13| Mouse DNA sequence from clone RP23-87I3 on chro... 40 1.9
18emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in ... 40 1.9
19emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 i... 40 1.9
20emb|AL929326.9| Zebrafish DNA sequence from clone BUSM1-SL11 in ... 40 1.9
21emb|BX000989.10| Mouse DNA sequence from clone RP23-33D17 on chr... 40 1.9
22gb|AC163666.2| Mus musculus BAC clone RP23-46B12 from chromosome... 38 7.4
23gb|AC159412.1| Trypanosoma brucei chromosome 7 clone RPCI93-21H1... 38 7.4
24ref|NM_172652.1| Mus musculus RIKEN cDNA 4632411B12 gene (463241... 38 7.4
25gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence 38 7.4
26gb|AC159702.1| Trypanosoma brucei chromosome 7 clone RPCI93-30D1... 38 7.4
27gb|AC124405.4| Mus musculus BAC clone RP24-372I6 from chromosome... 38 7.4
28ref|XM_775356.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 7.4
29emb|X63649.1|NSHMGRNA N.sylvestris mRNA for 3-hydroxy-3-methylgl... 38 7.4
30gb|AC010026.7| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell... 38 7.4
31gb|AC010060.10| Drosophila melanogaster 3L BAC RP98-22J22 (Roswe... 38 7.4
32gb|AC093497.2| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell... 38 7.4
33gb|AC010010.6| Drosophila melanogaster 3L BAC RP98-13F6 (Roswell... 38 7.4
34gb|AC012289.12| Homo sapiens chromosome 18, clone RP11-7E6, comp... 38 7.4
35emb|BX247906.8| Zebrafish DNA sequence from clone DKEY-9O22 in l... 38 7.4
36dbj|AK030079.1| Mus musculus adult male testis cDNA, RIKEN full-... 38 7.4
37gb|AF542543.1| Nicotiana attenuata 3-hydroxy-3-methylglutaryl-Co... 38 7.4
38gb|AC122686.6| Homo sapiens 12 BAC RP11-295J2 (Roswell Park Canc... 38 7.4
39gb|AF004233.1| Nicotiana tabacum hydroxy-methyl-glutaryl-coenzym... 38 7.4
40dbj|AK129329.1| Mus musculus mRNA for mKIAA1310 protein 38 7.4
41gb|AY111554.1| Zea mays CL1493_2 mRNA sequence 38 7.4
42gb|AC153569.4| Mus musculus 10 BAC RP23-225D5 (Roswell Park Canc... 38 7.4
43emb|CR962123.2| Medicago truncatula chromosome 5 clone mth2-167a... 38 7.4
44gb|AE003533.4| Drosophila melanogaster chromosome 3L, section 52... 38 7.4
45gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 ... 38 7.4
46gb|BC105865.1| Rattus norvegicus similar to RIKEN cDNA 4632411B1... 38 7.4
47ref|NM_001034835.1| Rattus norvegicus similar to RIKEN cDNA 4632... 38 7.4
48emb|CT025673.8| Mouse DNA sequence from clone RP24-286H7 on chro... 38 7.4 
>emb|Z50799.1|HVHHMG12 H.vulgare mRNA for HMG1/2-like protein
          Length = 974

 Score =  168 bits (85), Expect = 3e-39
 Identities = 91/93 (97%)
 Strand = Plus / Minus

                                                                       
Query: 61  ggacaacaacagcttaatctaacattacccaaactgatattatcacaatgttagccgatg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 936 ggacaacaacagcttaatctaacattacccaaactgattttatcacaatgttagccgata 877

                                            
Query: 121 acaatggacggaaagagtgaccatctaggtagg 153
           |||||||||||||||||||||||||||||||||
Sbjct: 876 acaatggacggaaagagtgaccatctaggtagg 844
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>emb|Z11540.1|TAHMGW T.aestivum mRNA for high mobility group protein (HMGW)
          Length = 923

 Score =  147 bits (74), Expect = 1e-32
 Identities = 83/86 (96%)
 Strand = Plus / Minus

                                                                       
Query: 66  acaacagcttaatctaacattacccaaactgatattatcacaatgttagccgatgacaat 125
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 917 acaacagcttaatctaacattacccagactgatattatcacaatgttagccggtgacaat 858

                                     
Query: 126 ggacggaaagagtgaccatctaggta 151
           ||||||||||||| ||||||||||||
Sbjct: 857 ggacggaaagagtaaccatctaggta 832
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>gb|L28094.1|BLYCDNA Barley mRNA sequence
          Length = 942

 Score =  147 bits (74), Expect = 1e-32
 Identities = 74/74 (100%)
 Strand = Plus / Minus

                                                                       
Query: 80  taacattacccaaactgatattatcacaatgttagccgatgacaatggacggaaagagtg 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 taacattacccaaactgatattatcacaatgttagccgatgacaatggacggaaagagtg 864

                         
Query: 140 accatctaggtagg 153
           ||||||||||||||
Sbjct: 863 accatctaggtagg 850
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>gb|AY262827.1| Oryza sativa (indica cultivar-group) HMGB1 gene, complete cds
          Length = 3659

 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 53/55 (96%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                   
Query: 74   ttaatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 128
            |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 3347 ttaatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 3294
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 53/55 (96%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                       
Query: 74       ttaatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 128
                |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 30479221 ttaatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 30479168
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>gb|AF541859.1| Oryza sativa (indica cultivar-group) HMG1 protein (HMG1) mRNA,
           complete cds
          Length = 918

 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 53/55 (96%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                  
Query: 74  ttaatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 128
           |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 891 ttaatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 838
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>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0017G10
          Length = 166700

 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 53/55 (96%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                     
Query: 74     ttaatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 128
              |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 116582 ttaatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 116529
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>gb|AF093632.1|AF093632 Oryza sativa high mobility group protein (HMG) mRNA, complete cds
          Length = 869

 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 53/55 (96%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                  
Query: 74  ttaatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 128
           |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ttaatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 789
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>emb|X66077.1|ZMMNB1B Z.mays MNB1b mRNA for DNA-binding protein
          Length = 918

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                            
Query: 73  cttaatctaacattacccaaactgatattatcacaatgttagccgatga 121
           ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 847 cttaatctaacattacccaaactgacattatgacaatgttagccgatga 799
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>emb|X58282.1|ZMHMGPMR Maize mRNA for a high mobility group protein
          Length = 885

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                            
Query: 73  cttaatctaacattacccaaactgatattatcacaatgttagccgatga 121
           ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 852 cttaatctaacattacccaaactgacattatgacaatgttagccgatga 804
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>emb|AJ131373.1|ZMA131373 Zea mays hmga gene, exons 1-7
          Length = 2133

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 73   cttaatctaacattacccaaactgatattatcacaatgttagccgatga 121
            ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 1719 cttaatctaacattacccaaactgacattatgacaatgttagccgatga 1671
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>dbj|AK068898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170E23, full
           insert sequence
          Length = 998

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 51/53 (96%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 76  aatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 128
           |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 998 aatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 947
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>dbj|AK062226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C12, full
           insert sequence
          Length = 913

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 51/53 (96%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 76  aatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 128
           |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 913 aatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 862
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>gb|AY103575.1| Zea mays PCO080122 mRNA sequence
          Length = 1153

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 73   cttaatctaacattacccaaactgatattatcacaatgttagccgatga 121
            ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 1039 cttaatctaacattacccaaactgacattatgacaatgttagccgatga 991
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>emb|BX842700.35| Zebrafish DNA sequence from clone DKEY-2P18 in linkage group 4,
             complete sequence
          Length = 198258

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    agacgcacaacaagaacagg 62
             ||||||||||||||||||||
Sbjct: 45982 agacgcacaacaagaacagg 45963
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>gb|AC004942.1| Homo sapiens PAC clone RP5-981B16 from 7, complete sequence
          Length = 76079

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    cccaaactgatattatcaca 107
             ||||||||||||||||||||
Sbjct: 66501 cccaaactgatattatcaca 66482
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>emb|AL732595.13| Mouse DNA sequence from clone RP23-87I3 on chromosome 11 Contains a
             novel pseudogene, a RNA binding motif protein (Rbm8)
             pseudogene, the 5' end of the Acyp2 gene for muscle type
             acylphosphatase 2 and a CpG island, complete sequence
          Length = 115716

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     ggcaacaatcacataacaaa 27
             ||||||||||||||||||||
Sbjct: 57924 ggcaacaatcacataacaaa 57943
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>emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20,
             complete sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    cataaaacatagacgcacaa 52
             ||||||||||||||||||||
Sbjct: 17716 cataaaacatagacgcacaa 17697
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>emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 in linkage group 20,
             complete sequence
          Length = 189717

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    cataaaacatagacgcacaa 52
             ||||||||||||||||||||
Sbjct: 49730 cataaaacatagacgcacaa 49711
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>emb|AL929326.9| Zebrafish DNA sequence from clone BUSM1-SL11 in linkage group 20,
             complete sequence
          Length = 137700

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    agacgcacaacaagaacagg 62
             ||||||||||||||||||||
Sbjct: 40519 agacgcacaacaagaacagg 40538
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>emb|BX000989.10| Mouse DNA sequence from clone RP23-33D17 on chromosome 4, complete
              sequence
          Length = 236166

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     aacaagaacaggacaacaac 70
              ||||||||||||||||||||
Sbjct: 100432 aacaagaacaggacaacaac 100413
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>gb|AC163666.2| Mus musculus BAC clone RP23-46B12 from chromosome 9, complete sequence
          Length = 213408

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 23     acaaaccaagcataaaacataga 45
              |||||||||||||| ||||||||
Sbjct: 169688 acaaaccaagcatagaacataga 169666
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>gb|AC159412.1| Trypanosoma brucei chromosome 7 clone RPCI93-21H15, complete sequence
          Length = 159636

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 9     gcaacaatcacataacaaaccaa 31
             |||||| ||||||||||||||||
Sbjct: 68987 gcaacagtcacataacaaaccaa 68965
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>ref|NM_172652.1| Mus musculus RIKEN cDNA 4632411B12 gene (4632411B12Rik), mRNA
          Length = 4664

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 16  tcacataacaaaccaagca 34
           |||||||||||||||||||
Sbjct: 910 tcacataacaaaccaagca 928
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>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 9       gcaacaatcacataacaaaccaa 31
               |||||| ||||||||||||||||
Sbjct: 2037611 gcaacagtcacataacaaaccaa 2037633
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>gb|AC159702.1| Trypanosoma brucei chromosome 7 clone RPCI93-30D13, complete sequence
          Length = 171752

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 9      gcaacaatcacataacaaaccaa 31
              |||||| ||||||||||||||||
Sbjct: 167606 gcaacagtcacataacaaaccaa 167584
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>gb|AC124405.4| Mus musculus BAC clone RP24-372I6 from chromosome 6, complete sequence
          Length = 153417

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 17    cacataacaaaccaagcat 35
             |||||||||||||||||||
Sbjct: 45115 cacataacaaaccaagcat 45097
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>ref|XM_775356.1| PREDICTED: Strongylocentrotus purpuratus similar to DKFZP586A0522
           protein (LOC574948), mRNA
          Length = 756

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 43  agacgcacaacaagaacag 61
           |||||||||||||||||||
Sbjct: 551 agacgcacaacaagaacag 569
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>emb|X63649.1|NSHMGRNA N.sylvestris mRNA for 3-hydroxy-3-methylglutaryl-coenzyme A
           reductase
          Length = 2355

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 49  acaacaagaacaggacaac 67
           |||||||||||||||||||
Sbjct: 173 acaacaagaacaggacaac 191
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>gb|AC010026.7| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179776

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 82     acattacccaaactgatattatc 104
              |||| ||||||||||||||||||
Sbjct: 165328 acataacccaaactgatattatc 165350
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>gb|AC010060.10| Drosophila melanogaster 3L BAC RP98-22J22 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 200985

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 49     acaacaagaacaggacaacaaca 71
              ||||||| |||||||||||||||
Sbjct: 158019 acaacaacaacaggacaacaaca 157997
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>gb|AC093497.2| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170071

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 49    acaacaagaacaggacaacaaca 71
             ||||||| |||||||||||||||
Sbjct: 20408 acaacaacaacaggacaacaaca 20386
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>gb|AC010010.6| Drosophila melanogaster 3L BAC RP98-13F6 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 167977

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 82     acattacccaaactgatattatc 104
              |||| ||||||||||||||||||
Sbjct: 159399 acataacccaaactgatattatc 159377
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>gb|AC012289.12| Homo sapiens chromosome 18, clone RP11-7E6, complete sequence
          Length = 165022

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    caacaatcacataacaaac 28
             |||||||||||||||||||
Sbjct: 86480 caacaatcacataacaaac 86462
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>emb|BX247906.8| Zebrafish DNA sequence from clone DKEY-9O22 in linkage group 24, complete
              sequence
          Length = 213917

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     acaaaccaagcataaaaca 41
              |||||||||||||||||||
Sbjct: 130862 acaaaccaagcataaaaca 130844
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>dbj|AK030079.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932435K23 product:SERUM
           INHIBITED-RELATED PROTEIN homolog [Homo sapiens], full
           insert sequence
          Length = 4664

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 16  tcacataacaaaccaagca 34
           |||||||||||||||||||
Sbjct: 910 tcacataacaaaccaagca 928
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>gb|AF542543.1| Nicotiana attenuata 3-hydroxy-3-methylglutaryl-CoA reductase mRNA,
           complete cds
          Length = 2000

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 49  acaacaagaacaggacaac 67
           |||||||||||||||||||
Sbjct: 87  acaacaagaacaggacaac 105
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>gb|AC122686.6| Homo sapiens 12 BAC RP11-295J2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 121995

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 49    acaacaagaacaggacaacaaca 71
             ||||||||||||| |||||||||
Sbjct: 90894 acaacaagaacagaacaacaaca 90872
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>gb|AF004233.1| Nicotiana tabacum hydroxy-methyl-glutaryl-coenzyme A reductase
           (HMGRL) mRNA, complete cds
          Length = 2406

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 49  acaacaagaacaggacaac 67
           |||||||||||||||||||
Sbjct: 186 acaacaagaacaggacaac 204
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>dbj|AK129329.1| Mus musculus mRNA for mKIAA1310 protein
          Length = 4527

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 16  tcacataacaaaccaagca 34
           |||||||||||||||||||
Sbjct: 773 tcacataacaaaccaagca 791
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>gb|AY111554.1| Zea mays CL1493_2 mRNA sequence
          Length = 797

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 99  attatcacaatgttagccgatga 121
           ||||| |||||||||||||||||
Sbjct: 794 attatgacaatgttagccgatga 772
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>gb|AC153569.4| Mus musculus 10 BAC RP23-225D5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 193135

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     cacataacaaaccaagcat 35
              |||||||||||||||||||
Sbjct: 110092 cacataacaaaccaagcat 110110
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>emb|CR962123.2| Medicago truncatula chromosome 5 clone mth2-167a19, COMPLETE SEQUENCE
          Length = 128818

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 9     gcaacaatcacataacaaaccaa 31
             |||||||||||||| ||||||||
Sbjct: 78491 gcaacaatcacatatcaaaccaa 78469
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>gb|AE003533.4| Drosophila melanogaster chromosome 3L, section 52 of 83 of the complete
              sequence
          Length = 289141

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 49     acaacaagaacaggacaacaaca 71
              ||||||| |||||||||||||||
Sbjct: 282575 acaacaacaacaggacaacaaca 282553
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>gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 of 83 of the complete
             sequence
          Length = 307657

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 82    acattacccaaactgatattatc 104
             |||| ||||||||||||||||||
Sbjct: 76995 acataacccaaactgatattatc 76973
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>gb|BC105865.1| Rattus norvegicus similar to RIKEN cDNA 4632411B12, mRNA (cDNA
           clone MGC:125261 IMAGE:7461395), complete cds
          Length = 4460

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 16  tcacataacaaaccaagca 34
           |||||||||||||||||||
Sbjct: 850 tcacataacaaaccaagca 868
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>ref|NM_001034835.1| Rattus norvegicus similar to RIKEN cDNA 4632411B12 (RGD1309220),
           mRNA
          Length = 4460

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 16  tcacataacaaaccaagca 34
           |||||||||||||||||||
Sbjct: 850 tcacataacaaaccaagca 868
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>emb|CT025673.8| Mouse DNA sequence from clone RP24-286H7 on chromosome 9, complete
             sequence
          Length = 148870

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 23    acaaaccaagcataaaacataga 45
             |||||||||||||| ||||||||
Sbjct: 44901 acaaaccaagcatagaacataga 44879


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,198,624
Number of Sequences: 3902068
Number of extensions: 1198624
Number of successful extensions: 82344
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82246
Number of HSP's gapped (non-prelim): 98
length of query: 153
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 132
effective length of database: 17,151,101,840
effective search space: 2263945442880
effective search space used: 2263945442880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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