ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet61f01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 498 bits (251), Expect = e-138 Identities = 251/251 (100%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116915 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 116974 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116975 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 117034 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117035 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 117094 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117095 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 117154 Query: 241 gataccggagg 251 ||||||||||| Sbjct: 117155 gataccggagg 117165 Score = 498 bits (251), Expect = e-138 Identities = 251/251 (100%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97979 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 97920 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97919 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 97860 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97859 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 97800 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97799 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 97740 Query: 241 gataccggagg 251 ||||||||||| Sbjct: 97739 gataccggagg 97729
>gb|L41587.1|PPTCPITSA Poa pratensis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 485 Score = 482 bits (243), Expect = e-133 Identities = 249/251 (99%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 236 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 176 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 116 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 115 ttccatacttctgtcgctccatccccatatgggtggagaacccgtcgctgtctcggttgt 56 Query: 241 gataccggagg 251 ||||||||||| Sbjct: 55 gataccggagg 45
>gb|L29442.1|PPTCP Poa pratensis chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 506 Score = 482 bits (243), Expect = e-133 Identities = 249/251 (99%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 267 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 207 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 147 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 146 ttccatacttctgtcgctccatccccatatgggtggagaacccgtcgctgtctcggttgt 87 Query: 241 gataccggagg 251 ||||||||||| Sbjct: 86 gataccggagg 76
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 478 bits (241), Expect = e-132 Identities = 247/249 (99%) Strand = Plus / Plus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 473972 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 474031 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 474032 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 474091 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 474092 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 474151 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 474152 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgc 474211 Query: 243 taccggagg 251 ||||||||| Sbjct: 474212 taccggagg 474220
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 478 bits (241), Expect = e-132 Identities = 247/249 (99%) Strand = Plus / Minus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 470024 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 469965 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469964 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 469905 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469904 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 469845 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469844 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgc 469785 Query: 243 taccggagg 251 ||||||||| Sbjct: 469784 taccggagg 469776
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 478 bits (241), Expect = e-132 Identities = 247/249 (99%) Strand = Plus / Plus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183490 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 183549 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183550 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 183609 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183610 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 183669 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183670 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgc 183729 Query: 243 taccggagg 251 ||||||||| Sbjct: 183730 taccggagg 183738
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 478 bits (241), Expect = e-132 Identities = 247/249 (99%) Strand = Plus / Plus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499995 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 500054 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500055 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 500114 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500115 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 500174 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500175 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgc 500234 Query: 243 taccggagg 251 ||||||||| Sbjct: 500235 taccggagg 500243
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 478 bits (241), Expect = e-132 Identities = 247/249 (99%) Strand = Plus / Plus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41741 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 41800 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41801 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 41860 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41861 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 41920 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41921 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgc 41980 Query: 243 taccggagg 251 ||||||||| Sbjct: 41981 taccggagg 41989 Score = 478 bits (241), Expect = e-132 Identities = 247/249 (99%) Strand = Plus / Minus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23376 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 23317 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23316 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 23257 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23256 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 23197 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23196 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgc 23137 Query: 243 taccggagg 251 ||||||||| Sbjct: 23136 taccggagg 23128
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 478 bits (241), Expect = e-132 Identities = 247/249 (99%) Strand = Plus / Plus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120581 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 120640 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120641 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 120700 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120701 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 120760 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120761 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgc 120820 Query: 243 taccggagg 251 ||||||||| Sbjct: 120821 taccggagg 120829 Score = 478 bits (241), Expect = e-132 Identities = 247/249 (99%) Strand = Plus / Minus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102256 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 102197 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102196 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 102137 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102136 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 102077 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102076 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgc 102017 Query: 243 taccggagg 251 ||||||||| Sbjct: 102016 taccggagg 102008
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 478 bits (241), Expect = e-132 Identities = 247/249 (99%) Strand = Plus / Plus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121298 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 121357 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121358 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 121417 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121418 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 121477 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121478 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgc 121537 Query: 243 taccggagg 251 ||||||||| Sbjct: 121538 taccggagg 121546 Score = 478 bits (241), Expect = e-132 Identities = 247/249 (99%) Strand = Plus / Minus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102933 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 102874 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102873 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 102814 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102813 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 102754 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102753 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgc 102694 Query: 243 taccggagg 251 ||||||||| Sbjct: 102693 taccggagg 102685
>gb|M36716.1|MZEMTCPAA Maize mitochondrion with chloroplast insert containing rRNAs Length = 1986 Score = 478 bits (241), Expect = e-132 Identities = 247/249 (99%) Strand = Plus / Minus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1243 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 1184 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1183 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 1124 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 1064 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1063 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgc 1004 Query: 243 taccggagg 251 ||||||||| Sbjct: 1003 taccggagg 995
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116780 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 116839 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116840 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 116899 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116900 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 116959 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116960 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 117019 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 117020 gctaccggagg 117030 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98376 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 98317 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98316 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 98257 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98256 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 98197 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98196 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 98137 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 98136 gctaccggagg 98126
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116780 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 116839 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116840 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 116899 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116900 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 116959 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116960 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 117019 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 117020 gctaccggagg 117030 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98376 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 98317 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98316 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 98257 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98256 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 98197 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98196 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 98137 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 98136 gctaccggagg 98126
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116729 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 116788 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116789 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 116848 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116849 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 116908 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116909 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 116968 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 116969 gctaccggagg 116979 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98321 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 98262 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98261 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 98202 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98201 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 98142 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98141 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 98082 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 98081 gctaccggagg 98071
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31512086 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 31512027 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31512026 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 31511967 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31511966 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 31511907 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31511906 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 31511847 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 31511846 gctaccggagg 31511836 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31510954 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 31510895 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31510894 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 31510835 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31510834 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 31510775 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31510774 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 31510715 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 31510714 gctaccggagg 31510704 Score = 424 bits (214), Expect = e-116 Identities = 223/226 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 13872798 catcttttcatcaaagagttgaacaatgaagataaatggcaagtgcctgatcgatttgat 13872857 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13872858 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 13872917 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13872918 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 13872977 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtc 226 |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 13872978 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtc 13873023 Score = 91.7 bits (46), Expect = 1e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 128 acttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctatttccata 187 ||||| ||| |||||||||| |||||| ||||||| ||||| ||||||||||||||| Sbjct: 17385028 acttctactagacacctattcaaacggttcgtctcattactaccgtatcctatttccata 17385087 Query: 188 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtg 241 ||||| |||||||||||| ||| | ||| |||||| || |||||||||||||| Sbjct: 17385088 cttctatcgctccatcccggtaagagtgaagaacctgttactgtctcggctgtg 17385141 Score = 77.8 bits (39), Expect = 1e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 25 aatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaaggttca 84 |||||| |||||||| | |||| ||||||||||||||| | ||||||| | | ||||||| Sbjct: 17384872 aatgaatatagatggtacgtgcatgatcgatttgatcatgtcgtgtagaatccaggttca 17384931 Query: 85 aatcgttcgttcgttaggatgcctcagctgcatac 119 ||| ||| |||| ||||||| ||| |||||||||| Sbjct: 17384932 aatagtttgttcattaggataccttagctgcatac 17384966
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence Length = 133449 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81642 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 81701 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81702 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 81761 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81762 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 81821 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81822 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 81881 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 81882 gctaccggagg 81892 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80510 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 80569 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80570 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 80629 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80630 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 80689 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80690 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 80749 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 80750 gctaccggagg 80760
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116753 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 116812 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116813 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 116872 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116873 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 116932 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116933 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 116992 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 116993 gctaccggagg 117003 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98365 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 98306 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98305 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 98246 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98245 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 98186 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98185 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 98126 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 98125 gctaccggagg 98115
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125417 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 125358 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125357 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 125298 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125297 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 125238 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125237 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 125178 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 125177 gctaccggagg 125167 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17143 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 17084 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17083 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 17024 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17023 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 16964 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16963 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 16904 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 16903 gctaccggagg 16893
>emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042F21, complete sequence Length = 167113 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143951 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 143892 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143891 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 143832 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143831 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 143772 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143771 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 143712 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 143711 gctaccggagg 143701
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9271303 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 9271244 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9271243 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 9271184 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9271183 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 9271124 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9271123 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 9271064 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 9271063 gctaccggagg 9271053 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9230803 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 9230744 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9230743 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 9230684 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9230683 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 9230624 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9230623 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 9230564 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 9230563 gctaccggagg 9230553 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9167391 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 9167332 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9167331 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 9167272 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9167271 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 9167212 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9167211 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 9167152 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 9167151 gctaccggagg 9167141 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9059217 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 9059158 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9059157 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 9059098 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9059097 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 9059038 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9059037 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 9058978 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 9058977 gctaccggagg 9058967 Score = 69.9 bits (35), Expect = 4e-09 Identities = 52/57 (91%), Gaps = 3/57 (5%) Strand = Plus / Minus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttga 59 |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| Sbjct: 6602736 tcttttcatcaaagagttgagcaa---agatagatggcaagtgcctgctcgatttga 6602683 Score = 46.1 bits (23), Expect = 0.053 Identities = 38/43 (88%) Strand = Plus / Plus Query: 12 caaagagttgaacaatgaagatagatggcaagtgcctgatcga 54 ||||||||| |||||| |||| ||||| |||||||||||||| Sbjct: 6674274 caaagagttaaacaataaagagagatgataagtgcctgatcga 6674316
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19941291 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 19941232 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19941231 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 19941172 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19941171 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 19941112 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19941111 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 19941052 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 19941051 gctaccggagg 19941041 Score = 466 bits (235), Expect = e-128 Identities = 247/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10390155 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 10390096 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10390095 caggtcgtgtagcaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 10390036 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10390035 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 10389976 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10389975 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 10389916 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 10389915 gctaccggagg 10389905 Score = 79.8 bits (40), Expect = 4e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 79 ggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 14020458 ggttcaaatcgttcattcgttaggatgcctcagctgcatacatc 14020415
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9238978 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 9239037 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9239038 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 9239097 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9239098 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 9239157 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9239158 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 9239217 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 9239218 gctaccggagg 9239228
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31602602 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 31602543 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31602542 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 31602483 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31602482 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 31602423 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31602422 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 31602363 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 31602362 gctaccggagg 31602352 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31601470 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 31601411 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31601410 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 31601351 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31601350 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 31601291 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31601290 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 31601231 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 31601230 gctaccggagg 31601220 Score = 424 bits (214), Expect = e-116 Identities = 223/226 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 13867773 catcttttcatcaaagagttgaacaatgaagataaatggcaagtgcctgatcgatttgat 13867832 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13867833 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 13867892 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13867893 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 13867952 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtc 226 |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 13867953 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtc 13867998 Score = 91.7 bits (46), Expect = 1e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 128 acttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctatttccata 187 ||||| ||| |||||||||| |||||| ||||||| ||||| ||||||||||||||| Sbjct: 17378569 acttctactagacacctattcaaacggttcgtctcattactaccgtatcctatttccata 17378628 Query: 188 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtg 241 ||||| |||||||||||| ||| | ||| |||||| || |||||||||||||| Sbjct: 17378629 cttctatcgctccatcccggtaagagtgaagaacctgttactgtctcggctgtg 17378682 Score = 77.8 bits (39), Expect = 1e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 25 aatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaaggttca 84 |||||| |||||||| | |||| ||||||||||||||| | ||||||| | | ||||||| Sbjct: 17378413 aatgaatatagatggtacgtgcatgatcgatttgatcatgtcgtgtagaatccaggttca 17378472 Query: 85 aatcgttcgttcgttaggatgcctcagctgcatac 119 ||| ||| |||| ||||||| ||| |||||||||| Sbjct: 17378473 aatagtttgttcattaggataccttagctgcatac 17378507
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33581816 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 33581757 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33581756 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 33581697 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33581696 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 33581637 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33581636 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 33581577 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 33581576 gctaccggagg 33581566
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 44752 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 44811 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 44812 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 44871 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 44872 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 44931 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 44932 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 44991 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 44992 gctaccggagg 45002
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127013 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 126954 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126953 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 126894 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126893 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 126834 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126833 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 126774 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 126773 gctaccggagg 126763
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50191 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 50250 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50251 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 50310 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50311 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 50370 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50371 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 50430 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 50431 gctaccggagg 50441
>dbj|AK119524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E06, full insert sequence Length = 1809 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1809 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 1750 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1749 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 1690 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1689 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 1630 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1629 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 1570 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 1569 gctaccggagg 1559
>dbj|AK060583.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H06, full insert sequence Length = 1094 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 427 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 426 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 367 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 366 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 307 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 247 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 246 gctaccggagg 236
>gb|L41591.1|BAMCPITSA Bambusa multiplex chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 483 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 293 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcaatttgat 234 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 174 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 114 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 54 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 53 gctaccggagg 43
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19952567 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 19952508 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19952507 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 19952448 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19952447 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 19952388 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19952387 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 19952328 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 19952327 gctaccggagg 19952317 Score = 466 bits (235), Expect = e-128 Identities = 247/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10396194 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 10396135 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10396134 caggtcgtgtagcaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 10396075 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10396074 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 10396015 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10396014 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 10395955 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 10395954 gctaccggagg 10395944 Score = 79.8 bits (40), Expect = 4e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 79 ggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 14028700 ggttcaaatcgttcattcgttaggatgcctcagctgcatacatc 14028657
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116723 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 116782 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116783 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 116842 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116843 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 116902 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116903 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 116962 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 116963 gctaccggagg 116973 Score = 474 bits (239), Expect = e-131 Identities = 248/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98316 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 98257 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98256 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 98197 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98196 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 98137 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98136 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 98077 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 98076 gctaccggagg 98066
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 466 bits (235), Expect = e-128 Identities = 247/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96547 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 96488 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96487 caggtcgtgtagcaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 96428 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96427 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 96368 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96367 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 96308 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 96307 gctaccggagg 96297
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 466 bits (235), Expect = e-128 Identities = 247/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30611 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 30552 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30551 caggtcgtgtagcaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 30492 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30491 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 30432 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30431 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 30372 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 30371 gctaccggagg 30361
>dbj|AK060185.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-C09, full insert sequence Length = 886 Score = 466 bits (235), Expect = e-128 Identities = 247/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 886 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 827 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 826 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 767 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 766 tcactgcacttccacttgacacctatttaaccggctcgtctcgccgctaccttatcctat 707 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 706 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 647 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 646 gctaccggagg 636
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 458 bits (231), Expect = e-126 Identities = 246/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 5632684 catcttttcatcaaagagttgaacaatgaagaaagatggcaagtgcctgatcgatttgat 5632743 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5632744 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 5632803 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5632804 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 5632863 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5632864 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 5632923 Query: 241 gataccggagg 251 | ||| ||||| Sbjct: 5632924 gctactggagg 5632934
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 458 bits (231), Expect = e-126 Identities = 246/251 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 5632673 catcttttcatcaaagagttgaacaatgaagaaagatggcaagtgcctgatcgatttgat 5632732 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5632733 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 5632792 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5632793 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 5632852 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5632853 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 5632912 Query: 241 gataccggagg 251 | ||| ||||| Sbjct: 5632913 gctactggagg 5632923
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 458 bits (231), Expect = e-126 Identities = 246/251 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 20201 catcttttcatcaaagagttgaacaatgaagaaagatggcaagtgcctgatcgatttgat 20142 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20141 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 20082 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20081 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 20022 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20021 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 19962 Query: 241 gataccggagg 251 | ||| ||||| Sbjct: 19961 gctactggagg 19951
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 454 bits (229), Expect = e-125 Identities = 245/249 (98%), Gaps = 1/249 (0%) Strand = Plus / Plus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120526 tcttttcatcaa-gagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 120584 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120585 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 120644 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120645 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 120704 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 120705 ccatacttctgtcgctccatccccgtgtgggtggagaacccgtcgctgtctcggctgtgc 120764 Query: 243 taccggagg 251 ||||||||| Sbjct: 120765 taccggagg 120773 Score = 454 bits (229), Expect = e-125 Identities = 245/249 (98%), Gaps = 1/249 (0%) Strand = Plus / Minus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102211 tcttttcatcaa-gagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 102153 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102152 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 102093 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102092 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 102033 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 102032 ccatacttctgtcgctccatccccgtgtgggtggagaacccgtcgctgtctcggctgtgc 101973 Query: 243 taccggagg 251 ||||||||| Sbjct: 101972 taccggagg 101964
>emb|Z00028.1|CHZMRRNA Zea mays chloroplast rRNA-operon Length = 8862 Score = 454 bits (229), Expect = e-125 Identities = 245/249 (98%), Gaps = 1/249 (0%) Strand = Plus / Minus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8564 tcttttcatcaa-gagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 8506 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8505 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 8446 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8445 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 8386 Query: 183 ccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtga 242 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 8385 ccatacttctgtcgctccatccccgtgtgggtggagaacccgtcgctgtctcggctgtgc 8326 Query: 243 taccggagg 251 ||||||||| Sbjct: 8325 taccggagg 8317
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 450 bits (227), Expect = e-123 Identities = 245/251 (97%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 815938 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 815879 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 815878 caggtcgtgtaggaacaatgttcaaatcgttcgttcgttaggatgcctcagctgcataca 815819 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 815818 tcactgcacttccacttgacacctatttaaacggctcatctcgccgctaccttatcctat 815759 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 815758 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctat 815699 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 815698 gctaccggagg 815688 Score = 119 bits (60), Expect = 4e-24 Identities = 63/64 (98%) Strand = Plus / Minus Query: 188 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 19435594 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccg 19435535 Query: 248 gagg 251 |||| Sbjct: 19435534 gagg 19435531
>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1442_E05 Length = 162407 Score = 450 bits (227), Expect = e-123 Identities = 245/251 (97%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25146 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 25087 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 25086 caggtcgtgtaggaacaatgttcaaatcgttcgttcgttaggatgcctcagctgcataca 25027 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 25026 tcactgcacttccacttgacacctatttaaacggctcatctcgccgctaccttatcctat 24967 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 24966 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctat 24907 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 24906 gctaccggagg 24896
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 450 bits (227), Expect = e-123 Identities = 245/251 (97%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94069 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 94010 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 94009 caggtcgtgtaggaacaatgttcaaatcgttcgttcgttaggatgcctcagctgcataca 93950 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 93949 tcactgcacttccacttgacacctatttaaacggctcatctcgccgctaccttatcctat 93890 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 93889 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctat 93830 Query: 241 gataccggagg 251 | ||||||||| Sbjct: 93829 gctaccggagg 93819
>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12, from chromosome 3, complete sequence Length = 161676 Score = 424 bits (214), Expect = e-116 Identities = 223/226 (98%) Strand = Plus / Minus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 138684 catcttttcatcaaagagttgaacaatgaagataaatggcaagtgcctgatcgatttgat 138625 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138624 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 138565 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138564 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 138505 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtc 226 |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 138504 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtc 138459
>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048D11, from chromosome 3, complete sequence Length = 158911 Score = 424 bits (214), Expect = e-116 Identities = 223/226 (98%) Strand = Plus / Plus Query: 1 catcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgat 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 149326 catcttttcatcaaagagttgaacaatgaagataaatggcaagtgcctgatcgatttgat 149385 Query: 61 caggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149386 caggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcataca 149445 Query: 121 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149446 tcactgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctat 149505 Query: 181 ttccatacttctgtcgctccatccccgtatgggtggagaacccgtc 226 |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 149506 ttccatgcttctgtcgctccatccccgtatgggtggagaacccgtc 149551
>emb|AJ535776.1|ZMA535776 Zea mays chloroplast 4.5S rRNA gene, 5S rRNA gene, tRNA-Arg gene, ORF23, tRNA-Asn gene, ORF63 and rps15 gene (partial), cultivar CM111 Length = 2941 Score = 367 bits (185), Expect = 1e-98 Identities = 195/197 (98%), Gaps = 1/197 (0%) Strand = Plus / Minus Query: 3 tcttttcatcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 62 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 tcttttcatcaa-gagttgaacaatgaagatagatggcaagtgcctgatcgatttgatca 138 Query: 63 ggccgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 ggtcgtgtaggaacaaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 78 Query: 123 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 actgcacttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctattt 18 Query: 183 ccatacttctgtcgctc 199 ||||||||||||||||| Sbjct: 17 ccatacttctgtcgctc 1
>emb|X01365.1|CHZM23S Maize chloroplast DNA for 4.5S and 23S ribosomal RNA Length = 3079 Score = 331 bits (167), Expect = 6e-88 Identities = 173/175 (98%) Strand = Plus / Minus Query: 77 aaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccact 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3079 aaggttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccact 3020 Query: 137 tgacacctatttaaacggctcgtctcgccgctaccttatcctatttccatacttctgtcg 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3019 tgacacctatttaaacggctcgtctcgccgctaccttatcctatttccatacttctgtcg 2960 Query: 197 ctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccggagg 251 |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 2959 ctccatccccgtgtgggtggagaacccgtcgctgtctcggctgtgctaccggagg 2905
>dbj|AK059311.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G08, full insert sequence Length = 2105 Score = 329 bits (166), Expect = 2e-87 Identities = 172/174 (98%) Strand = Plus / Minus Query: 78 aggttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 965 aggttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccactt 906 Query: 138 gacacctatttaaacggctcgtctcgccgctaccttatcctatttccatacttctgtcgc 197 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 905 gacacctatttaaacggctcgtctcgccgctaccttatcctatttccatgcttctgtcgc 846 Query: 198 tccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccggagg 251 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 845 tccatccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccggagg 792
>dbj|AK059370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E12, full insert sequence Length = 1741 Score = 325 bits (164), Expect = 4e-86 Identities = 170/172 (98%) Strand = Plus / Minus Query: 80 gttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 952 gttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 893 Query: 140 cacctatttaaacggctcgtctcgccgctaccttatcctatttccatacttctgtcgctc 199 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 892 cacctatttaaacggctcgtctcgccgctaccttatcctatttccatgcttctgtcgctc 833 Query: 200 catccccgtatgggtggagaacccgtcgctgtctcggctgtgataccggagg 251 |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 832 catccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccggagg 781
>dbj|AK059158.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D02, full insert sequence Length = 1502 Score = 325 bits (164), Expect = 4e-86 Identities = 170/172 (98%) Strand = Plus / Minus Query: 80 gttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 816 gttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 757 Query: 140 cacctatttaaacggctcgtctcgccgctaccttatcctatttccatacttctgtcgctc 199 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 756 cacctatttaaacggctcgtctcgccgctaccttatcctatttccatgcttctgtcgctc 697 Query: 200 catccccgtatgggtggagaacccgtcgctgtctcggctgtgataccggagg 251 |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 696 catccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccggagg 645
>dbj|AK105766.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E02, full insert sequence Length = 2146 Score = 317 bits (160), Expect = 9e-84 Identities = 169/172 (98%) Strand = Plus / Minus Query: 80 gttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 139 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2146 gttcagatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 2087 Query: 140 cacctatttaaacggctcgtctcgccgctaccttatcctatttccatacttctgtcgctc 199 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2086 cacctatttaaacggctcgtctcgccgctaccttatcctatttccatgcttctgtcgctc 2027 Query: 200 catccccgtatgggtggagaacccgtcgctgtctcggctgtgataccggagg 251 |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 2026 catccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccggagg 1975
>dbj|AK061169.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B02, full insert sequence Length = 1006 Score = 317 bits (160), Expect = 9e-84 Identities = 169/172 (98%) Strand = Plus / Minus Query: 80 gttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 gttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 947 Query: 140 cacctatttaaacggctcgtctcgccgctaccttatcctatttccatacttctgtcgctc 199 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 946 cacctatttaaacggctcgtctcgccgctaccttatcctatttccatgcttctgtcgctc 887 Query: 200 catccccgtatgggtggagaacccgtcgctgtctcggctgtgataccggagg 251 ||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 886 catccccgtatgggtggagaacccgtcgctgtctcggctatgctaccggagg 835
>dbj|AK060139.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F01, full insert sequence Length = 1147 Score = 313 bits (158), Expect = 1e-82 Identities = 164/166 (98%) Strand = Plus / Minus Query: 86 atcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttgacaccta 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 atcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttgacaccta 513 Query: 146 tttaaacggctcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccc 205 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 512 tttaaacggctcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccc 453 Query: 206 cgtatgggtggagaacccgtcgctgtctcggctgtgataccggagg 251 |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 452 cgtatgggtggagaacccgtcgctgtctcggctgtgctaccggagg 407
>emb|AJ630601.1| Liparis loeselii chloroplast ITS2, 4.5S rRNA gene, and ITS3, isolate LipLV2 Length = 417 Score = 260 bits (131), Expect = 2e-66 Identities = 224/252 (88%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 273 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 214 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 213 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 154 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 153 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 94 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || ||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 93 tctcaatacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 34 Query: 240 tgataccggagg 251 |||||||||||| Sbjct: 33 tgataccggagg 22
>emb|AJ630600.1| Liparis loeselii chloroplast ITS2, 4.5S rRNA gene, and ITS3, isolate LipLSw1 Length = 417 Score = 260 bits (131), Expect = 2e-66 Identities = 224/252 (88%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 273 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 214 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 213 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 154 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 153 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 94 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || ||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 93 tctcaatacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 34 Query: 240 tgataccggagg 251 |||||||||||| Sbjct: 33 tgataccggagg 22
>emb|AJ551459.1|LLO551459 Liparis loeselii chloroplast 23S rRNA gene (partial), ITS2, 4.5S rRNA gene, ITS3 and 5S rRNA gene (partial), isolate LipLC Length = 505 Score = 260 bits (131), Expect = 2e-66 Identities = 224/252 (88%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 277 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 218 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 217 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 158 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 157 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 98 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || ||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 97 tctcaatacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 38 Query: 240 tgataccggagg 251 |||||||||||| Sbjct: 37 tgataccggagg 26
>emb|AJ551458.1|LLO551458 Liparis loeselii chloroplast 23S rRNA gene (partial), ITS2, 4.5S rRNA gene, ITS3 and 5S rRNA gene (partial), isolate LipLS Length = 509 Score = 260 bits (131), Expect = 2e-66 Identities = 224/252 (88%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 277 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 218 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 217 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 158 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 157 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 98 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || ||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 97 tctcaatacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 38 Query: 240 tgataccggagg 251 |||||||||||| Sbjct: 37 tgataccggagg 26
>emb|AJ551457.1|LLO551457 Liparis loeselii chloroplast 23S rRNA gene (partial), ITS2, 4.5S rRNA gene, ITS3 and 5S rRNA gene (partial), isolate LipLK Length = 494 Score = 260 bits (131), Expect = 2e-66 Identities = 224/252 (88%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 277 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 218 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 217 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 158 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 157 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 98 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || ||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 97 tctcaatacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 38 Query: 240 tgataccggagg 251 |||||||||||| Sbjct: 37 tgataccggagg 26
>emb|AJ551456.1|LLO551456 Liparis loeselii chloroplast 23S rRNA gene (partial), ITS2, 4.5S rRNA gene, ITS3 and 5S rRNA gene (partial), isolate LipLV1 Length = 518 Score = 260 bits (131), Expect = 2e-66 Identities = 224/252 (88%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 277 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 218 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 217 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 158 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 157 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 98 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || ||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 97 tctcaatacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 38 Query: 240 tgataccggagg 251 |||||||||||| Sbjct: 37 tgataccggagg 26
>gb|AY196909.1| Asphodelus lusitanicus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene and internal transcribed spacer 3, complete sequence; and 5S ribosomal RNA gene, partial sequence; chloroplast genes for chloroplast products Length = 605 Score = 252 bits (127), Expect = 5e-64 Identities = 223/252 (88%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 328 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 269 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 268 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 209 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 208 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 149 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || ||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 148 tctcaatacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 89 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 88 tgctaccggagg 77
>gb|AY196908.1| Asphodelus ramosus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene and internal transcribed spacer 3, complete sequence; and 5S ribosomal RNA gene, partial sequence; chloroplast genes for chloroplast products Length = 605 Score = 252 bits (127), Expect = 5e-64 Identities = 223/252 (88%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 328 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 269 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 268 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 209 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 208 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 149 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || ||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 148 tctcaatacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 89 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 88 tgctaccggagg 77
>emb|AJ551460.1|LLO551460 Liparis cf. distans LipV chloroplast ITS2 (partial), 4.5S rRNA gene, ITS3 and 5S rRNA gene (partial), isolate LipV Length = 464 Score = 244 bits (123), Expect = 1e-61 Identities = 222/252 (88%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 253 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 194 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 193 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 134 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 133 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 74 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || ||||||||||||||||||||||| | ||| ||||||||| |||||||||||||| Sbjct: 73 tctcaatacttctgtcgctccatccccgcaggggcagagaacccgccgctgtctcggctg 14 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 13 tgctaccggagg 2
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 236 bits (119), Expect = 3e-59 Identities = 221/252 (87%), Gaps = 11/252 (4%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 124787 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 124846 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 124847 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 124906 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 124907 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 124966 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || |||||||||||||||||||||| | ||| ||||||||| |||||||||||||| Sbjct: 124967 tctcaatacttctgtcgctccatccccacaggggcagagaacccgccgctgtctcggctg 125026 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 125027 tgctaccggagg 125038 Score = 236 bits (119), Expect = 3e-59 Identities = 221/252 (87%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 110135 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 110076 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 110075 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 110016 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 110015 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 109956 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || |||||||||||||||||||||| | ||| ||||||||| |||||||||||||| Sbjct: 109955 tctcaatacttctgtcgctccatccccacaggggcagagaacccgccgctgtctcggctg 109896 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 109895 tgctaccggagg 109884
>gb|L41592.1|CTACPITSA Caryota mitis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 492 Score = 230 bits (116), Expect = 2e-57 Identities = 221/252 (87%), Gaps = 13/252 (5%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 295 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcgtgt 236 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 235 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 176 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 175 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 116 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || |||||||||||||||||| ||| | ||| |||||||||||||||||||||||| Sbjct: 115 tctcaatacttctgtcgctccat--ccgcaggggcagagaacccgtcgctgtctcggctg 58 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 57 tgctaccggagg 46
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 228 bits (115), Expect = 7e-57 Identities = 220/252 (87%), Gaps = 11/252 (4%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||| ||||||||| ||||||||||||||||||||||| |||||| || ||||| Sbjct: 131907 tcaaacagttaaacaatgaaaatagatggcaagtgcctgatcgaattgatcgggtcgtgt 131966 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 131967 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 132026 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 132027 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 132086 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 132087 tctcaagacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 132146 Query: 240 tgataccggagg 251 || |||| |||| Sbjct: 132147 tgctaccagagg 132158 Score = 228 bits (115), Expect = 7e-57 Identities = 220/252 (87%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||| ||||||||| ||||||||||||||||||||||| |||||| || ||||| Sbjct: 108375 tcaaacagttaaacaatgaaaatagatggcaagtgcctgatcgaattgatcgggtcgtgt 108316 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 108315 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 108256 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 108255 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 108196 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 108195 tctcaagacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 108136 Query: 240 tgataccggagg 251 || |||| |||| Sbjct: 108135 tgctaccagagg 108124
>gb|L41568.1|MAICPITSA Magnolia campbellii chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 486 Score = 228 bits (115), Expect = 7e-57 Identities = 220/252 (87%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| |||||| || | ||| Sbjct: 297 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgt 238 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 237 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 178 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 177 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 118 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 117 tctcaagacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 58 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 57 tgctaccggagg 46
>gb|L29444.1|MAICP Magnolia campbellii chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 508 Score = 228 bits (115), Expect = 7e-57 Identities = 220/252 (87%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| |||||| || | ||| Sbjct: 328 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgt 269 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 268 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 209 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 208 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 149 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 148 tctcaagacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 89 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 88 tgctaccggagg 77
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 220 bits (111), Expect = 2e-54 Identities = 219/252 (86%), Gaps = 11/252 (4%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||||||||| |||||| || | ||| Sbjct: 133512 tcaaagagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgt 133571 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||| Sbjct: 133572 aggaacaaggttcaagtctatcggtctgttaggatgcctcagctgcatacatcactgcac 133631 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 133632 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 133691 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 133692 tctcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 133751 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 133752 tgctaccggagg 133763 Score = 220 bits (111), Expect = 2e-54 Identities = 219/252 (86%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||||||||| |||||| || | ||| Sbjct: 108913 tcaaagagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgt 108854 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||| Sbjct: 108853 aggaacaaggttcaagtctatcggtctgttaggatgcctcagctgcatacatcactgcac 108794 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 108793 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 108734 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 108733 tctcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 108674 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 108673 tgctaccggagg 108662
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 218 bits (110), Expect = 6e-54 Identities = 212/243 (87%), Gaps = 11/243 (4%) Strand = Plus / Plus Query: 20 tgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaag 79 ||||||||||| ||||||||| ||||||||||||| ||||||||| | | |||||||||| Sbjct: 131151 tgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatataggaacaag 131210 Query: 80 gttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttg 138 ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 131211 gttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccacttg 131270 Query: 139 acacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccatac 188 ||||||| ||||||||||||||||||| |||||||| | ||| || |||| Sbjct: 131271 gcacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggattctcaatac 131330 Query: 189 ttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccgg 248 ||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||||| Sbjct: 131331 ttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctaccgg 131390 Query: 249 agg 251 ||| Sbjct: 131391 agg 131393 Score = 218 bits (110), Expect = 6e-54 Identities = 212/243 (87%), Gaps = 11/243 (4%) Strand = Plus / Minus Query: 20 tgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaag 79 ||||||||||| ||||||||| ||||||||||||| ||||||||| | | |||||||||| Sbjct: 106820 tgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatataggaacaag 106761 Query: 80 gttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttg 138 ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 106760 gttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccacttg 106701 Query: 139 acacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccatac 188 ||||||| ||||||||||||||||||| |||||||| | ||| || |||| Sbjct: 106700 gcacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggattctcaatac 106641 Query: 189 ttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccgg 248 ||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||||| Sbjct: 106640 ttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctaccgg 106581 Query: 249 agg 251 ||| Sbjct: 106580 agg 106578
>gb|L41573.1|TLDCPITSA Tillandsia usneoides chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 492 Score = 214 bits (108), Expect = 1e-52 Identities = 219/252 (86%), Gaps = 13/252 (5%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 295 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 236 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 235 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 176 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||| ||||| ||||||||||||||||||| |||||||| | || Sbjct: 175 ttccacttgacgcctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 116 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || |||||||||||||||||| ||| | ||| |||||||||||||||||||||||| Sbjct: 115 tctcaatacttctgtcgctccat--ccgcaggggcagagaacccgtcgctgtctcggctg 58 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 57 tgctaccggagg 46
>gb|L41547.1|MNUCPITSA Molineria recurvata chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 491 Score = 214 bits (108), Expect = 1e-52 Identities = 220/252 (87%), Gaps = 14/252 (5%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||| ||||||| ||||||||| ||||| Sbjct: 294 tcaaacagttgaacaatgaaaatagatggcgagtgc-tgatcgaattgatcaggtcgtgt 236 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 235 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 176 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 175 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 116 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || |||||||||||||||||| ||| | ||| |||||||||||||||||||||||| Sbjct: 115 tctcaatacttctgtcgctccat--ccgcaggggcagagaacccgtcgctgtctcggctg 58 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 57 tgctaccggagg 46
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 212 bits (107), Expect = 4e-52 Identities = 218/252 (86%), Gaps = 11/252 (4%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||||||||| |||||| || | ||| Sbjct: 137278 tcaaagagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgt 137337 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 137338 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 137397 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 137398 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 137457 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 137458 tctcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 137517 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 137518 tgctaccggagg 137529 Score = 212 bits (107), Expect = 4e-52 Identities = 218/252 (86%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||||||||| |||||| || | ||| Sbjct: 112782 tcaaagagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgt 112723 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 112722 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 112663 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 112662 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 112603 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 112602 tctcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 112543 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 112542 tgctaccggagg 112531
>gb|L41594.1|RYPCPITSA Cryptocoryne ciliata chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 492 Score = 206 bits (104), Expect = 2e-50 Identities = 218/252 (86%), Gaps = 13/252 (5%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 295 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 236 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 235 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 176 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 175 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 116 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || ||||||||||| |||||| ||| | ||| ||||||||||||||||||||||| Sbjct: 115 tctcaatacttctgtcactccat--ccgcaggggcagagaacccgtcgctgtctcggcta 58 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 57 tgctaccggagg 46
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 204 bits (103), Expect = 1e-49 Identities = 217/252 (86%), Gaps = 11/252 (4%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 129918 tcaaagagttgaactatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 129977 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 129978 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 130037 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 130038 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 130097 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||| Sbjct: 130098 tctcaaaacttctgtcactccatccccgcaggggcggagaacccgttgctgtctcggctg 130157 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 130158 tgctaccggagg 130169 Score = 204 bits (103), Expect = 1e-49 Identities = 217/252 (86%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 106846 tcaaagagttgaactatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 106787 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 106786 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 106727 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 106726 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 106667 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||| Sbjct: 106666 tctcaaaacttctgtcactccatccccgcaggggcggagaacccgttgctgtctcggctg 106607 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 106606 tgctaccggagg 106595
>gb|L41598.1|DELCPITSA Delphinium elatum chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 493 Score = 204 bits (103), Expect = 1e-49 Identities = 218/252 (86%), Gaps = 12/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||| ||||||| |||||| || | ||| Sbjct: 296 tcaaagagttgaacaatgaaaatagatggcgagtgc-tgatcgaattgatcgggtcatgt 238 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||| Sbjct: 237 aggaacaaggttcaagtctatcggtctgttaggatgcctcagctgcatacatcactgcac 178 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 177 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 118 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 117 tctcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 58 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 57 tgctaccggagg 46
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 204 bits (103), Expect = 1e-49 Identities = 217/252 (86%), Gaps = 11/252 (4%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 130879 tcaaagagttgaactatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 130938 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 130939 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 130998 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 130999 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 131058 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||| Sbjct: 131059 tctcaaaacttctgtcactccatccccgcaggggcggagaacccgttgctgtctcggctg 131118 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 131119 tgctaccggagg 131130 Score = 204 bits (103), Expect = 1e-49 Identities = 217/252 (86%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 107770 tcaaagagttgaactatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 107711 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 107710 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 107651 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 107650 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 107591 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||| Sbjct: 107590 tctcaaaacttctgtcactccatccccgcaggggcggagaacccgttgctgtctcggctg 107531 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 107530 tgctaccggagg 107519
>gb|L29445.1|DELCP Delphinium elatum chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 513 Score = 204 bits (103), Expect = 1e-49 Identities = 218/252 (86%), Gaps = 12/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||| ||||||| |||||| || | ||| Sbjct: 327 tcaaagagttgaacaatgaaaatagatggcgagtgc-tgatcgaattgatcgggtcatgt 269 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||| Sbjct: 268 aggaacaaggttcaagtctatcggtctgttaggatgcctcagctgcatacatcactgcac 209 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 208 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 149 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 148 tctcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctg 89 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 88 tgctaccggagg 77
>gb|L41572.1|STZCPITSA Strelitzia nicolaii chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 480 Score = 202 bits (102), Expect = 4e-49 Identities = 214/247 (86%), Gaps = 12/247 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 297 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 238 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 237 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 178 Query: 130 ttccacttgacaccta-------tttaaacggctcgtctcgccgctaccttatcct--at 180 |||||||||| ||||| | ||||||||||||||||||| |||||||| | || Sbjct: 177 ttccacttgatacctatcgtaattataaacggctcgtctcgccgtgaccttatcttgaat 118 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || |||||||||||||||||| |||| | || |||||||||||||||||||||||| Sbjct: 117 tctcaatacttctgtcgctccat-cccgcagggacagagaacccgtcgctgtctcggctg 59 Query: 240 tgatacc 246 || |||| Sbjct: 58 tgctacc 52
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 200 bits (101), Expect = 1e-48 Identities = 215/250 (86%), Gaps = 11/250 (4%) Strand = Plus / Plus Query: 13 aaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtag 72 |||||||||||||||||| ||||||||| |||||| |||||| |||||| || | ||||| Sbjct: 129697 aaagagttgaacaatgaaaatagatggcgagtgcccgatcgaattgatcgggtcatgtag 129756 Query: 73 gaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcactt 131 ||||||||||||| || || || ||||||||||||||||||||||||||||||||||| Sbjct: 129757 gaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcactt 129816 Query: 132 ccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att- 181 ||||||||||||||| ||||||||||||||||||| ||||| || | ||| Sbjct: 129817 ccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaattc 129876 Query: 182 tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtg 241 || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| Sbjct: 129877 tcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtg 129936 Query: 242 ataccggagg 251 ||||||||| Sbjct: 129937 ctaccggagg 129946 Score = 200 bits (101), Expect = 1e-48 Identities = 215/250 (86%), Gaps = 11/250 (4%) Strand = Plus / Minus Query: 13 aaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtag 72 |||||||||||||||||| ||||||||| |||||| |||||| |||||| || | ||||| Sbjct: 107181 aaagagttgaacaatgaaaatagatggcgagtgcccgatcgaattgatcgggtcatgtag 107122 Query: 73 gaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcactt 131 ||||||||||||| || || || ||||||||||||||||||||||||||||||||||| Sbjct: 107121 gaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcactt 107062 Query: 132 ccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att- 181 ||||||||||||||| ||||||||||||||||||| ||||| || | ||| Sbjct: 107061 ccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaattc 107002 Query: 182 tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtg 241 || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| Sbjct: 107001 tcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtg 106942 Query: 242 ataccggagg 251 ||||||||| Sbjct: 106941 ctaccggagg 106932
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 200 bits (101), Expect = 1e-48 Identities = 215/250 (86%), Gaps = 11/250 (4%) Strand = Plus / Plus Query: 13 aaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtag 72 |||||||||||||||||| ||||||||| |||||| |||||| |||||| || | ||||| Sbjct: 128588 aaagagttgaacaatgaaaatagatggcgagtgcccgatcgaattgatcgggtcatgtag 128647 Query: 73 gaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcactt 131 ||||||||||||| || || || ||||||||||||||||||||||||||||||||||| Sbjct: 128648 gaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcactt 128707 Query: 132 ccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att- 181 ||||||||||||||| ||||||||||||||||||| ||||| || | ||| Sbjct: 128708 ccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaattc 128767 Query: 182 tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtg 241 || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| Sbjct: 128768 tcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtg 128827 Query: 242 ataccggagg 251 ||||||||| Sbjct: 128828 ctaccggagg 128837 Score = 200 bits (101), Expect = 1e-48 Identities = 215/250 (86%), Gaps = 11/250 (4%) Strand = Plus / Minus Query: 13 aaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtag 72 |||||||||||||||||| ||||||||| |||||| |||||| |||||| || | ||||| Sbjct: 106047 aaagagttgaacaatgaaaatagatggcgagtgcccgatcgaattgatcgggtcatgtag 105988 Query: 73 gaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcactt 131 ||||||||||||| || || || ||||||||||||||||||||||||||||||||||| Sbjct: 105987 gaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcactt 105928 Query: 132 ccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att- 181 ||||||||||||||| ||||||||||||||||||| ||||| || | ||| Sbjct: 105927 ccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaattc 105868 Query: 182 tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtg 241 || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| Sbjct: 105867 tcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtg 105808 Query: 242 ataccggagg 251 ||||||||| Sbjct: 105807 ctaccggagg 105798
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 200 bits (101), Expect = 1e-48 Identities = 215/250 (86%), Gaps = 11/250 (4%) Strand = Plus / Plus Query: 13 aaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtag 72 |||||||||||||||||| ||||||||| |||||| |||||| |||||| || | ||||| Sbjct: 129690 aaagagttgaacaatgaaaatagatggcgagtgcccgatcgaattgatcgggtcatgtag 129749 Query: 73 gaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcactt 131 ||||||||||||| || || || ||||||||||||||||||||||||||||||||||| Sbjct: 129750 gaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcactt 129809 Query: 132 ccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att- 181 ||||||||||||||| ||||||||||||||||||| ||||| || | ||| Sbjct: 129810 ccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaattc 129869 Query: 182 tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtg 241 || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| Sbjct: 129870 tcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtg 129929 Query: 242 ataccggagg 251 ||||||||| Sbjct: 129930 ctaccggagg 129939 Score = 200 bits (101), Expect = 1e-48 Identities = 215/250 (86%), Gaps = 11/250 (4%) Strand = Plus / Minus Query: 13 aaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtag 72 |||||||||||||||||| ||||||||| |||||| |||||| |||||| || | ||||| Sbjct: 107179 aaagagttgaacaatgaaaatagatggcgagtgcccgatcgaattgatcgggtcatgtag 107120 Query: 73 gaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcactt 131 ||||||||||||| || || || ||||||||||||||||||||||||||||||||||| Sbjct: 107119 gaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcactt 107060 Query: 132 ccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att- 181 ||||||||||||||| ||||||||||||||||||| ||||| || | ||| Sbjct: 107059 ccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaattc 107000 Query: 182 tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtg 241 || | ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| Sbjct: 106999 tcaaaacttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtg 106940 Query: 242 ataccggagg 251 ||||||||| Sbjct: 106939 ctaccggagg 106930
>gb|L41571.1|SQECPITSA Semele androgyna chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 491 Score = 198 bits (100), Expect = 6e-48 Identities = 219/253 (86%), Gaps = 13/253 (5%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||| ||||||| ||||||||| ||||| Sbjct: 297 tcaaacagttgaacaatgaaaatagatggcgagtgc-tgatcgaattgatcaggtcgtgt 239 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 238 gggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 179 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 178 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 119 Query: 181 t-tccatacttctgtcgctccatcc-ccgtatgggtggagaacccgtcgctgtctcggct 238 | || |||||||||||||||||||| | | ||| ||||||||||||||||||||||| Sbjct: 118 tctcaatacttctgtcgctccatccgcagggggggcagagaacccgtcgctgtctcggct 59 Query: 239 gtgataccggagg 251 ||| ||||||||| Sbjct: 58 gtgctaccggagg 46
>gb|AY196907.1| Quercus suber 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene and internal transcribed spacer 3, complete sequence; and 5S ribosomal RNA gene, partial sequence; chloroplast genes for chloroplast products Length = 635 Score = 196 bits (99), Expect = 2e-47 Identities = 216/252 (85%), Gaps = 11/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| || |||||| ||||||||||||| |||||| || | ||| Sbjct: 328 tcaaagagttgaacaatgaaaatggatggcgagtgcctgatcgaattgatcgggtcatgt 269 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 268 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 209 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 208 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 149 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| |||||||| ||||||||||||||| Sbjct: 148 tctcaaaacttctgtcgctccatccccgcaggggcagagaacccatcgctgtctcggctg 89 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 88 tgctaccggagg 77
>gb|L41602.1|EYGCPITSA Eryngium billardieri chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 520 Score = 196 bits (99), Expect = 2e-47 Identities = 217/252 (86%), Gaps = 12/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 295 tcaaagagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 236 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 235 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 176 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 175 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 116 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | |||||||||||||||| |||| | ||| |||||||||||||||||| ||||| Sbjct: 115 tctcaaaacttctgtcgctccat-cccgcaggggcagagaacccgtcgctgtcttggctg 57 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 56 tgctaccggagg 45
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 184 bits (93), Expect = 9e-44 Identities = 207/242 (85%), Gaps = 11/242 (4%) Strand = Plus / Plus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 |||||||||| ||||||||| ||||||||||||| |||||| || | ||||||||||||| Sbjct: 136509 gaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgtaggaacaagg 136568 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136569 ttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccacttga 136628 Query: 140 cacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccatact 189 ||||||| ||||||||||||||||||| |||||||| | ||| || ||||| Sbjct: 136629 cacctatcgtgatgataaacggctcgtctcgccgtgaccttatcttggattctcaatact 136688 Query: 190 tctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccgga 249 |||||||||||||||| | | || ||||||||||||||||||| ||||| |||| || Sbjct: 136689 tctgtcgctccatcccagcagggacagagaacccgtcgctgtctcaactgtgctaccaga 136748 Query: 250 gg 251 || Sbjct: 136749 gg 136750 Score = 184 bits (93), Expect = 9e-44 Identities = 207/242 (85%), Gaps = 11/242 (4%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 |||||||||| ||||||||| ||||||||||||| |||||| || | ||||||||||||| Sbjct: 113436 gaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgtaggaacaagg 113377 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113376 ttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccacttga 113317 Query: 140 cacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccatact 189 ||||||| ||||||||||||||||||| |||||||| | ||| || ||||| Sbjct: 113316 cacctatcgtgatgataaacggctcgtctcgccgtgaccttatcttggattctcaatact 113257 Query: 190 tctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccgga 249 |||||||||||||||| | | || ||||||||||||||||||| ||||| |||| || Sbjct: 113256 tctgtcgctccatcccagcagggacagagaacccgtcgctgtctcaactgtgctaccaga 113197 Query: 250 gg 251 || Sbjct: 113196 gg 113195
>gb|L41603.1|EPOCPITSA Eupomatia laurina chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 485 Score = 182 bits (92), Expect = 4e-43 Identities = 216/252 (85%), Gaps = 14/252 (5%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| |||||| || | ||| Sbjct: 294 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgt 235 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 234 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 175 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 174 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 115 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | |||||||||||||||| ||| | ||| ||||||||||| | |||||||||| Sbjct: 114 tctcaagacttctgtcgctccat--ccgcaggggcagagaacccgtc-cggtctcggctg 58 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 57 tgctaccggagg 46
>gb|L41600.1|DRICPITSA Drimys winteri chloroplast 4.5S rRNA-containing 23S-5S internal transcribed spacer in inverted repeat Length = 490 Score = 182 bits (92), Expect = 4e-43 Identities = 217/252 (86%), Gaps = 15/252 (5%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| |||||||||| |||| ||||||| |||||| || | ||| Sbjct: 293 tcaaacagttgaacaatgaaaatagatggca-gtgc-tgatcgaattgatcgggtcatgt 236 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 235 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 176 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 175 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 116 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | |||||||||||||||| ||| | ||| |||||||||||||||||||||||| Sbjct: 115 tctcaagacttctgtcgctccat--ccgcaggggcagagaacccgtcgctgtctcggctg 58 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 57 tgctaccggagg 46
>gb|M57605.1|BLYRR45S Barley chloroplast 4.5S rRNA Length = 95 Score = 180 bits (91), Expect = 1e-42 Identities = 94/95 (98%) Strand = Plus / Minus Query: 80 gttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 95 gttcaaatcgttcgttcgttaggatgcctcagctgcatacatgactgcacttccacttga 36 Query: 140 cacctatttaaacggctcgtctcgccgctacctta 174 ||||||||||||||||||||||||||||||||||| Sbjct: 35 cacctatttaaacggctcgtctcgccgctacctta 1
>gb|AY840214.1| Degeneria vitiensis internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 748 Score = 178 bits (90), Expect = 5e-42 Identities = 215/252 (85%), Gaps = 16/252 (6%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||| | ||||||||||||| |||||| || | ||| Sbjct: 273 tcaaacagttgaacaatgaaaatagatg-cgagtgcctgatcgaattgatcgggtcatgt 215 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 214 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 155 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 154 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggat 95 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | |||||||||||||||| | | ||| |||||||||||||||||||||||| Sbjct: 94 tctcaagacttctgtcgctccat----gcaggggcagagaacccgtcgctgtctcggctg 39 Query: 240 tgataccggagg 251 || ||||||||| Sbjct: 38 tgctaccggagg 27
>gb|AY840211.1| Nuphar advena internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 755 Score = 176 bits (89), Expect = 2e-41 Identities = 207/242 (85%), Gaps = 12/242 (4%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 |||||||||| ||||||||| ||||||||||||| |||||| || | ||||||||||||| Sbjct: 267 gaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgtaggaacaagg 208 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 ttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccacttga 148 Query: 140 cacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccatact 189 ||||||| ||||||||||||||||||| |||||||| | ||| || ||||| Sbjct: 147 cacctatcgtgatgataaacggctcgtctcgccgtgaccttatcttggattctcaatact 88 Query: 190 tctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccgga 249 ||||||||||||| |||| | || ||||||||||||||||||| ||||| |||| || Sbjct: 87 tctgtcgctccat-cccgcagggacagagaacccgtcgctgtctcaactgtgctaccaga 29 Query: 250 gg 251 || Sbjct: 28 gg 27
>gb|L41548.1|NYHCPITSA Nymphea coerulea chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 506 Score = 176 bits (89), Expect = 2e-41 Identities = 206/242 (85%), Gaps = 11/242 (4%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 |||||||||| ||||||||| |||||||||||| |||||| || | ||||||||||||| Sbjct: 287 gaacaatgaaaatagatggcgggtgcctgatcgaattgatcgggtcatgtaggaacaagg 228 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 ttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccacttga 168 Query: 140 cacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccatact 189 ||||||| ||||||||||||||||||| |||||||| | ||| || ||||| Sbjct: 167 cacctatcgtgatgataaacggctcgtctcgccgtgaccttatcttggattctcaatact 108 Query: 190 tctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccgga 249 |||||||||||||||| | | || ||||||||||||||||||| ||||| |||| || Sbjct: 107 tctgtcgctccatcccagcagggacagagaacccgtcgctgtctcaactgtgctaccaga 48 Query: 250 gg 251 || Sbjct: 47 gg 46
>gb|M10541.1|WHTCPRRK Wheat (T.aestivum) chloroplastid ribosome-associated 4.5S RNA Length = 96 Score = 176 bits (89), Expect = 2e-41 Identities = 89/89 (100%) Strand = Plus / Minus Query: 80 gttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96 gttcaaatcgttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 37 Query: 140 cacctatttaaacggctcgtctcgccgct 168 ||||||||||||||||||||||||||||| Sbjct: 36 cacctatttaaacggctcgtctcgccgct 8
>gb|M35405.1|BLYCPRR45S H.vulgare chloroplast 4.5S ribosomal RNA Length = 96 Score = 174 bits (88), Expect = 9e-41 Identities = 95/96 (98%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 80 gttcaaatcgttcg-ttcgttaggatgcctcagctgcatacatcactgcacttccacttg 138 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96 gttcaaatcgttcggttcgttaggatgcctcagctgcatacatcactgcacttccacttg 37 Query: 139 acacctatttaaacggctcgtctcgccgctacctta 174 |||||||||||||||||||||||||||||||||||| Sbjct: 36 acacctatttaaacggctcgtctcgccgctacctta 1
>gb|AY840213.1| Victoria amazonica internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 764 Score = 170 bits (86), Expect = 1e-39 Identities = 170/195 (87%), Gaps = 11/195 (5%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 |||||||||| ||||||||| ||||||||||||| |||||| || | ||||||||||||| Sbjct: 267 gaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgtaggaacaagg 208 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 ttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccacttga 148 Query: 140 cacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccatact 189 ||||||| ||||||||||||||||||| |||||||| | ||| || ||||| Sbjct: 147 cacctatcgtgatgataaacggctcgtctcgccgtgaccttatcttggattctcaatact 88 Query: 190 tctgtcgctccatcc 204 ||||||||||||||| Sbjct: 87 tctgtcgctccatcc 73
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||||||||| |||||| || | ||| Sbjct: 136424 tcaaagagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgt 136483 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 136484 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 136543 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 136544 ttccacttgacacctat 136560 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||||||||| |||||| || | ||| Sbjct: 112673 tcaaagagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgt 112614 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 112613 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 112554 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 112553 ttccacttgacacctat 112537
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 133217 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 133276 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 133277 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 133336 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 133337 ttccacttgacacctat 133353 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 109413 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 109354 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 109353 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 109294 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 109293 ttccacttgacacctat 109277 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 133407 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 133466 Query: 247 ggagg 251 ||||| Sbjct: 133467 ggagg 133471 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 109223 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 109164 Query: 247 ggagg 251 ||||| Sbjct: 109163 ggagg 109159
>gb|J01451.1|TOBCPRA1 Nicotiana tabacum 4.5S ribosomal RNA, 5S ribosomal RNA, tRNA-Arg, and tRNA-Asn genes, complete sequence; and unknown genes; chloroplast Length = 1676 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 181 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 122 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 121 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 62 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 61 ttccacttgacacctat 45
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 133853 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 133912 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 133913 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 133972 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 133973 ttccacttgacacctat 133989 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 109704 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 109645 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 109644 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 109585 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 109584 ttccacttgacacctat 109568 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 134043 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 134102 Query: 247 ggagg 251 ||||| Sbjct: 134103 ggagg 134107 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 109514 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 109455 Query: 247 ggagg 251 ||||| Sbjct: 109454 ggagg 109450
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 132462 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 132521 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 132522 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 132581 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 132582 ttccacttgacacctat 132598 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 108574 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 108515 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 108514 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 108455 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 108454 ttccacttgacacctat 108438 Score = 85.7 bits (43), Expect = 6e-14 Identities = 58/63 (92%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 132652 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 132711 Query: 247 gga 249 ||| Sbjct: 132712 gga 132714 Score = 85.7 bits (43), Expect = 6e-14 Identities = 58/63 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 108384 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108325 Query: 247 gga 249 ||| Sbjct: 108324 gga 108322
>gb|AF242851.1|AF242851 Brassica napus 4.5S ribosomal RNA, 5S ribosomal RNA and tRNA-Arg (trnR) genes, complete sequence; chloroplast genes for chloroplast products Length = 1084 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 181 tcaaagagttgaactatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 122 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 121 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 62 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 61 ttccacttgacacctat 45
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 132598 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 132657 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 132658 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 132717 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 132718 ttccacttgacacctat 132734 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 108745 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 108686 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 108685 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 108626 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 108625 ttccacttgacacctat 108609 Score = 85.7 bits (43), Expect = 6e-14 Identities = 58/63 (92%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 132788 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 132847 Query: 247 gga 249 ||| Sbjct: 132848 gga 132850 Score = 85.7 bits (43), Expect = 6e-14 Identities = 58/63 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 108555 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108496 Query: 247 gga 249 ||| Sbjct: 108495 gga 108493
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 132596 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 132655 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 132656 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 132715 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 132716 ttccacttgacacctat 132732 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 108742 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 108683 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 108682 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 108623 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 108622 ttccacttgacacctat 108606 Score = 85.7 bits (43), Expect = 6e-14 Identities = 58/63 (92%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 132786 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 132845 Query: 247 gga 249 ||| Sbjct: 132846 gga 132848 Score = 85.7 bits (43), Expect = 6e-14 Identities = 58/63 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 108552 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108493 Query: 247 gga 249 ||| Sbjct: 108492 gga 108490
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 132508 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 132567 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 132568 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 132627 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 132628 ttccacttgacacctat 132644 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 108620 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 108561 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 108560 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 108501 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 108500 ttccacttgacacctat 108484 Score = 85.7 bits (43), Expect = 6e-14 Identities = 58/63 (92%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 132698 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 132757 Query: 247 gga 249 ||| Sbjct: 132758 gga 132760 Score = 85.7 bits (43), Expect = 6e-14 Identities = 58/63 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 108430 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108371 Query: 247 gga 249 ||| Sbjct: 108370 gga 108368
>gb|L41586.1|PPQCPITSA Piper longum chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 501 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||| |||||||||||||| ||||||||| ||||||||||||| || ||| || | ||| Sbjct: 299 tcaaacagttgaacaatgaaaatagatggcgagtgcctgatcgaattaatcgggtcatgt 240 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct: 239 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcac 180 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 179 ttccacttgacacctat 163 Score = 61.9 bits (31), Expect = 9e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 217 agaacccgtcgctgtctcggctgtgataccggagg 251 ||||||||||||||||||||||||| ||||||||| Sbjct: 80 agaacccgtcgctgtctcggctgtgctaccggagg 46
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 133215 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 133274 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 133275 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 133334 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 133335 ttccacttgacacctat 133351 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 109411 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 109352 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 109351 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 109292 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 109291 ttccacttgacacctat 109275 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 133405 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 133464 Query: 247 ggagg 251 ||||| Sbjct: 133465 ggagg 133469 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 109221 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 109162 Query: 247 ggagg 251 ||||| Sbjct: 109161 ggagg 109157
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||||||||| |||||| || | ||| Sbjct: 127448 tcaaagagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgt 127507 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 127508 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 127567 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 127568 ttccacttgacacctat 127584 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||||||||| |||||| || | ||| Sbjct: 105008 tcaaagagttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcgggtcatgt 104949 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 104948 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 104889 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 104888 ttccacttgacacctat 104872 Score = 50.1 bits (25), Expect = 0.003 Identities = 55/65 (84%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 |||||| ||||||| |||| | | ||| |||||||| ||||| ||||||||||| |||| Sbjct: 127636 acttctttcgctccgtccctgcaggggcagagaacccatcgctatctcggctgtgctacc 127695 Query: 247 ggagg 251 ||||| Sbjct: 127696 ggagg 127700 Score = 50.1 bits (25), Expect = 0.003 Identities = 55/65 (84%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 |||||| ||||||| |||| | | ||| |||||||| ||||| ||||||||||| |||| Sbjct: 104820 acttctttcgctccgtccctgcaggggcagagaacccatcgctatctcggctgtgctacc 104761 Query: 247 ggagg 251 ||||| Sbjct: 104760 ggagg 104756
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 132946 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 133005 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 133006 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 133065 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 133066 ttccacttgacacctat 133082 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 109192 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 109133 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 109132 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 109073 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 109072 ttccacttgacacctat 109056 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 133136 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 133195 Query: 247 ggagg 251 ||||| Sbjct: 133196 ggagg 133200 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 109002 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108943 Query: 247 ggagg 251 ||||| Sbjct: 108942 ggagg 108938
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 132475 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 132534 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 132535 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 132594 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 132595 ttccacttgacacctat 132611 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 108587 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 108528 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 108527 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 108468 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 108467 ttccacttgacacctat 108451 Score = 85.7 bits (43), Expect = 6e-14 Identities = 58/63 (92%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 132665 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 132724 Query: 247 gga 249 ||| Sbjct: 132725 gga 132727 Score = 85.7 bits (43), Expect = 6e-14 Identities = 58/63 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 108397 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108338 Query: 247 gga 249 ||| Sbjct: 108337 gga 108335
>emb|X01277.1|CHNTRRNA Tobacco chloroplast genes for 4.5S and 5S ribosomal RNA Length = 750 Score = 168 bits (85), Expect = 5e-39 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| | ||| Sbjct: 181 tcaaagatttgaacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgt 122 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 121 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 62 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 61 ttccacttgacacctat 45
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 165 bits (83), Expect = 8e-38 Identities = 195/228 (85%), Gaps = 12/228 (5%) Strand = Plus / Plus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 |||||||||||| ||||||||| ||| |||||||| |||||| || | | ||||||||| Sbjct: 139031 ttgaacaatgaaaatagatggcgggtgactgatcgaattgatcgggtcat-taggaacaa 139089 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 139090 ggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccactt 139149 Query: 138 gacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccata 187 ||||||||| ||||||||||||||||||| |||||||| | ||| || ||| Sbjct: 139150 gacacctatcgtgatgataaacggctcgtctcgccgtgaccttatcttggattctcaata 139209 Query: 188 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcg 235 |||||||||||||||||||| | || |||||||||||||||||||| Sbjct: 139210 cttctgtcgctccatccccgcagggacagagaacccgtcgctgtctcg 139257 Score = 165 bits (83), Expect = 8e-38 Identities = 195/228 (85%), Gaps = 12/228 (5%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 |||||||||||| ||||||||| ||| |||||||| |||||| || | | ||||||||| Sbjct: 114626 ttgaacaatgaaaatagatggcgggtgactgatcgaattgatcgggtcat-taggaacaa 114568 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 114567 ggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccactt 114508 Query: 138 gacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccata 187 ||||||||| ||||||||||||||||||| |||||||| | ||| || ||| Sbjct: 114507 gacacctatcgtgatgataaacggctcgtctcgccgtgaccttatcttggattctcaata 114448 Query: 188 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcg 235 |||||||||||||||||||| | || |||||||||||||||||||| Sbjct: 114447 cttctgtcgctccatccccgcagggacagagaacccgtcgctgtctcg 114400
>gb|L41604.1|FGPCPITSA Fagopyrum sagittatum chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 526 Score = 165 bits (83), Expect = 8e-38 Identities = 213/252 (84%), Gaps = 12/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||| ||||| ||||||||||||| |||||| || | ||| Sbjct: 296 tcaaagagttgaacaatgaaaataaatggcgagtgcctgatcgaattgatcgggtcatgt 237 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||| ||||| || ||| || ||||||||||||||||||||||||||||||||| Sbjct: 236 aggaacaag-ttcaagtctatcggtctgttaggatgcctcagctgcatacatcactgcac 178 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 |||||| |||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 177 ttccacctgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 118 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| ||||||| |||||||||||||| | Sbjct: 117 tctcaaaacttctgtcgctccatccccgcaggggcagagaacctgtcgctgtctcggccg 58 Query: 240 tgataccggagg 251 || | ||||||| Sbjct: 57 tgctgccggagg 46
>gb|J01439.1|SOLCPRG45 Spirodela punctata chloroplast 4.5S and 5S ribosomal RNA genes Length = 587 Score = 165 bits (83), Expect = 8e-38 Identities = 107/115 (93%) Strand = Plus / Minus Query: 32 atagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaaggttcaaatcgtt 91 ||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||||| | Sbjct: 154 atagatggcgagtgcctgatcgaattgatcaggtcatgtaggaacaaggttcaaatctct 95 Query: 92 cgttcgttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 || || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94 cggtcattaggatgcctcagctgcatacatcactgcacttccacttgacacctat 40
>gb|L29447.1|FGPCP Fagopyrum esculentum chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 546 Score = 165 bits (83), Expect = 8e-38 Identities = 213/252 (84%), Gaps = 12/252 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||| ||||| ||||||||||||| |||||| || | ||| Sbjct: 327 tcaaagagttgaacaatgaaaataaatggcgagtgcctgatcgaattgatcgggtcatgt 268 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||| ||||| || ||| || ||||||||||||||||||||||||||||||||| Sbjct: 267 aggaacaag-ttcaagtctatcggtctgttaggatgcctcagctgcatacatcactgcac 209 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 |||||| |||||||||| ||||||||||||||||||| ||||| || | || Sbjct: 208 ttccacctgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaat 149 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | ||||||||||||||||||||| | ||| ||||||| |||||||||||||| | Sbjct: 148 tctcaaaacttctgtcgctccatccccgcaggggcagagaacctgtcgctgtctcggccg 89 Query: 240 tgataccggagg 251 || | ||||||| Sbjct: 88 tgctgccggagg 77
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 161 bits (81), Expect = 1e-36 Identities = 124/137 (90%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||| ||||| |||||| || | ||| Sbjct: 132821 tcaaagagttgaacaatgaaaatagatggcgagtgcctaatcgaattgatcgggtcatgt 132880 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 132881 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 132940 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 132941 ttccacttgacacctat 132957 Score = 161 bits (81), Expect = 1e-36 Identities = 124/137 (90%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||| ||||| |||||| || | ||| Sbjct: 109085 tcaaagagttgaacaatgaaaatagatggcgagtgcctaatcgaattgatcgggtcatgt 109026 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 109025 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 108966 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 108965 ttccacttgacacctat 108949 Score = 81.8 bits (41), Expect = 1e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||| ||||||||||||||||| |||| Sbjct: 133008 acttctgtcgctccatccccgcaggggcagagaacccatcgctgtctcggctgtgctacc 133067 Query: 247 ggagg 251 ||||| Sbjct: 133068 ggagg 133072 Score = 81.8 bits (41), Expect = 1e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||| ||||||||||||||||| |||| Sbjct: 108898 acttctgtcgctccatccccgcaggggcagagaacccatcgctgtctcggctgtgctacc 108839 Query: 247 ggagg 251 ||||| Sbjct: 108838 ggagg 108834
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 161 bits (81), Expect = 1e-36 Identities = 169/197 (85%), Gaps = 11/197 (5%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| || |||||| ||||||||||||| |||||| |||| ||| Sbjct: 128694 tcaaagaattgaacaatgaaaatggatggcgagtgcctgatcgaattgatcgggccatgt 128753 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || | | || ||||||||||||||||||||||||||||||||| Sbjct: 128754 aggaacaaggttcaagtctgtgggtctgttaggatgcctcagctgcatacatcactgcac 128813 Query: 130 ttccacttgacacctatt-------taaacggctcgtctcgccgctaccttatcctattt 182 ||||||||||||||||| ||||||||||||||||||| ||||| || ||| Sbjct: 128814 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgacctt---ctcttt 128870 Query: 183 ccatacttctgtcgctc 199 ||| ||||||||||||| Sbjct: 128871 ccaaacttctgtcgctc 128887 Score = 161 bits (81), Expect = 1e-36 Identities = 169/197 (85%), Gaps = 11/197 (5%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| || |||||| ||||||||||||| |||||| |||| ||| Sbjct: 104751 tcaaagaattgaacaatgaaaatggatggcgagtgcctgatcgaattgatcgggccatgt 104692 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || | | || ||||||||||||||||||||||||||||||||| Sbjct: 104691 aggaacaaggttcaagtctgtgggtctgttaggatgcctcagctgcatacatcactgcac 104632 Query: 130 ttccacttgacacctatt-------taaacggctcgtctcgccgctaccttatcctattt 182 ||||||||||||||||| ||||||||||||||||||| ||||| || ||| Sbjct: 104631 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgacctt---ctcttt 104575 Query: 183 ccatacttctgtcgctc 199 ||| ||||||||||||| Sbjct: 104574 ccaaacttctgtcgctc 104558
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 161 bits (81), Expect = 1e-36 Identities = 124/137 (90%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||| ||||| |||||| || | ||| Sbjct: 133100 tcaaagagttgaacaatgaaaatagatggcgagtgcctaatcgaattgatcgggtcatgt 133159 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 133160 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 133219 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 133220 ttccacttgacacctat 133236 Score = 161 bits (81), Expect = 1e-36 Identities = 124/137 (90%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||| ||||| |||||| || | ||| Sbjct: 109307 tcaaagagttgaacaatgaaaatagatggcgagtgcctaatcgaattgatcgggtcatgt 109248 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 109247 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 109188 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 109187 ttccacttgacacctat 109171 Score = 81.8 bits (41), Expect = 1e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||| ||||||||||||||||| |||| Sbjct: 133287 acttctgtcgctccatccccgcaggggcagagaacccatcgctgtctcggctgtgctacc 133346 Query: 247 ggagg 251 ||||| Sbjct: 133347 ggagg 133351 Score = 81.8 bits (41), Expect = 1e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||| ||||||||||||||||| |||| Sbjct: 109120 acttctgtcgctccatccccgcaggggcagagaacccatcgctgtctcggctgtgctacc 109061 Query: 247 ggagg 251 ||||| Sbjct: 109060 ggagg 109056
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 161 bits (81), Expect = 1e-36 Identities = 124/137 (90%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| | ||||||||||| |||||| || | ||| Sbjct: 136629 tcaaagagttgaacaatgaaaatagatggcgaatgcctgatcgaattgatcgggtcatgt 136688 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 136689 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 136748 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 136749 ttccacttgacacctat 136765 Score = 161 bits (81), Expect = 1e-36 Identities = 124/137 (90%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| | ||||||||||| |||||| || | ||| Sbjct: 112670 tcaaagagttgaacaatgaaaatagatggcgaatgcctgatcgaattgatcgggtcatgt 112611 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 112610 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 112551 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 112550 ttccacttgacacctat 112534 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 136816 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 136875 Query: 247 ggagg 251 ||||| Sbjct: 136876 ggagg 136880 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 112483 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 112424 Query: 247 ggagg 251 ||||| Sbjct: 112423 ggagg 112419
>gb|AY840212.1| Nymphaea gigantea internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 723 Score = 159 bits (80), Expect = 5e-36 Identities = 171/197 (86%), Gaps = 12/197 (6%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 |||||||||||| ||||||| | ||||||||||||| |||||| || | ||||||||||| Sbjct: 234 ttgaacaatgaaaatagatg-cgagtgcctgatcgaattgatcgggtcatgtaggaacaa 176 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 ggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccactt 116 Query: 138 gacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccata 187 ||||||||| ||||||||||||||||||| |||||||| | ||| || ||| Sbjct: 115 gacacctatcgtgatgataaacggctcgtctcgccgtgaccttatcttggattctcaata 56 Query: 188 cttctgtcgctccatcc 204 ||||||||||||||||| Sbjct: 55 cttctgtcgctccatcc 39
>gb|AY029747.1| Populus deltoides 23S ribosomal RNA, 4.5S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence; chloroplast genes for chloroplast products Length = 5157 Score = 159 bits (80), Expect = 5e-36 Identities = 201/239 (84%), Gaps = 13/239 (5%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||| || ||||||||| ||| ||||||||| |||||| || | ||||||||||||| Sbjct: 4855 gaacaataaaaatagatggcgagtacctgatcgaattgatcgggtcatgtaggaacaagg 4796 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 ||||| || || || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4795 ttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcacttccacttga 4736 Query: 140 cacctat-------ttaaacggctcgtctcgccgctaccttatcctatttccatacttct 192 ||||||| ||||||||||||||||||| ||||| || |||| | |||||| Sbjct: 4735 cacctatcgtaatgataaacggctcgtctcgccgtgacctt---ctctttcaaaacttct 4679 Query: 193 gtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccggagg 251 ||| |||||||||| | || |||||||||||||||||||||||||| ||||||||| Sbjct: 4678 gtccgtccatccccgca--ggcagagaacccgtcgctgtctcggctgtgctaccggagg 4622
>gb|L41550.1|PMACPITSA Peperomia glabrata chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 510 Score = 159 bits (80), Expect = 5e-36 Identities = 213/253 (84%), Gaps = 12/253 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcct-gatcgatttgatcaggccgtg 69 ||||| |||| ||||||||| ||||||||| ||||||| |||| | || ||| || | || Sbjct: 298 tcaaacagttaaacaatgaaaatagatggcgagtgccttgatcaaattaatcgggtcatg 239 Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||| Sbjct: 238 taggaacaaggttcaaatctctcggtctgttaggatgtctcagctgcatacatcactgca 179 Query: 129 cttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--a 179 |||||||||||||||||| ||||||||||||||||||| |||||||| | | Sbjct: 178 cttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttgga 119 Query: 180 tt-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggct 238 || || | ||||||||||||||| |||| |||| ||||||| ||||||||||||||| Sbjct: 118 ttctcaagacttctgtcgctccacccccccgggggtagagaacctgtcgctgtctcggct 59 Query: 239 gtgataccggagg 251 ||| ||||||||| Sbjct: 58 gtgctaccggagg 46
>gb|L29446.1|MRRCP Myrrhis odorata chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 546 Score = 159 bits (80), Expect = 5e-36 Identities = 214/253 (84%), Gaps = 13/253 (5%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatc-gatttgatcaggccgtg 69 |||||||||||||||||||| ||||| ||| ||||||||| | || |||||| || | || Sbjct: 326 tcaaagagttgaacaatgaaaatagacggctagtgcctgacccgaattgatcgggtcatg 267 Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 |||||||||||||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 266 taggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgca 207 Query: 129 cttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--a 179 |||||||||||||||||| ||||||||||||||||||| ||||| || | | Sbjct: 206 cttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaa 147 Query: 180 tt-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggct 238 || || | |||||||||||||||| |||| | ||| |||||||||||||||||| |||| Sbjct: 146 ttctcaaaacttctgtcgctccat-cccgcaggggcagagaacccgtcgctgtcttggct 88 Query: 239 gtgataccggagg 251 ||| ||||||||| Sbjct: 87 gtgctaccggagg 75
>gb|L29443.1|PMACP Peperomia glabrata chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 531 Score = 159 bits (80), Expect = 5e-36 Identities = 213/253 (84%), Gaps = 12/253 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcct-gatcgatttgatcaggccgtg 69 ||||| |||| ||||||||| ||||||||| ||||||| |||| | || ||| || | || Sbjct: 329 tcaaacagttaaacaatgaaaatagatggcgagtgccttgatcaaattaatcgggtcatg 270 Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||| Sbjct: 269 taggaacaaggttcaaatctctcggtctgttaggatgtctcagctgcatacatcactgca 210 Query: 129 cttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--a 179 |||||||||||||||||| ||||||||||||||||||| |||||||| | | Sbjct: 209 cttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttgga 150 Query: 180 tt-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggct 238 || || | ||||||||||||||| |||| |||| ||||||| ||||||||||||||| Sbjct: 149 ttctcaagacttctgtcgctccacccccccgggggtagagaacctgtcgctgtctcggct 90 Query: 239 gtgataccggagg 251 ||| ||||||||| Sbjct: 89 gtgctaccggagg 77
>gb|L41582.1|ANVCPITSA Annona montana chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 482 Score = 155 bits (78), Expect = 8e-35 Identities = 118/130 (90%), Gaps = 1/130 (0%) Strand = Plus / Minus Query: 18 gttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaaca 77 ||||||||||||| |||| |||| ||||||||||||| |||||| || | |||||||||| Sbjct: 285 gttgaacaatgaaaataggtggcgagtgcctgatcgaattgatcgggtcatgtaggaaca 226 Query: 78 aggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccact 136 ||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct: 225 aggttcaaatctctcggtctgttaggatgcctcagctacatacatcactgcacttccact 166 Query: 137 tgacacctat 146 |||||||||| Sbjct: 165 tgacacctat 156
>gb|J01446.1|TOBCPRG23 Tobacco chloroplast 23S and 4.5S rRNA genes Length = 3166 Score = 155 bits (78), Expect = 8e-35 Identities = 115/126 (91%), Gaps = 1/126 (0%) Strand = Plus / Minus Query: 22 aacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaaggt 81 ||||||||| ||||||||| ||||||||||||| ||||||||| | |||||||||||||| Sbjct: 3166 aacaatgaaaatagatggcgagtgcctgatcgaattgatcaggtcatgtaggaacaaggt 3107 Query: 82 tcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttgac 140 |||| || || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3106 tcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcacttccacttgac 3047 Query: 141 acctat 146 |||||| Sbjct: 3046 acctat 3041 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 2987 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 2928 Query: 247 ggagg 251 ||||| Sbjct: 2927 ggagg 2923
>gb|AY840209.1| Barclaya longifolia internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 777 Score = 153 bits (77), Expect = 3e-34 Identities = 118/129 (91%), Gaps = 2/129 (1%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 |||||||||||| ||||||| | ||||||||||||| |||||| || | ||||||||||| Sbjct: 267 ttgaacaatgaaaatagatg-cgagtgcctgatcgaattgatcgggtcatgtaggaacaa 209 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 ggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccactt 149 Query: 138 gacacctat 146 ||||||||| Sbjct: 148 gacacctat 140 Score = 40.1 bits (20), Expect = 3.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 216 gagaacccgtcgctgtctcggctgtgataccggagg 251 ||||||||||||||||||| ||||| |||| |||| Sbjct: 62 gagaacccgtcgctgtctcaactgtgctacctgagg 27
>gb|L41564.1|FRUCPITSA Ferulago galbanifera chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 492 Score = 151 bits (76), Expect = 1e-33 Identities = 214/253 (84%), Gaps = 14/253 (5%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatc-gatttgatcaggccgtg 69 |||||||||||||||||||| ||||| ||| ||||||||| | || |||||| || | || Sbjct: 295 tcaaagagttgaacaatgaaaatagacggctagtgcctgacccgaattgatc-ggtcatg 237 Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 |||||||||||||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 236 taggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgca 177 Query: 129 cttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--a 179 |||||||||||||||||| ||||||||||||||||||| ||||| || | | Sbjct: 176 cttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttctcttgaa 117 Query: 180 tt-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggct 238 || || | |||||||||||||||| |||| | ||| |||||||||||||||||| |||| Sbjct: 116 ttctcaaaacttctgtcgctccat-cccgcaggggcagagaacccgtcgctgtcttggct 58 Query: 239 gtgataccggagg 251 ||| ||||||||| Sbjct: 57 gtgctaccggagg 45
>gb|M81884.1|EPFCPCG Epifagus virginiana chloroplast, complete genome Length = 70028 Score = 149 bits (75), Expect = 5e-33 Identities = 207/248 (83%), Gaps = 11/248 (4%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| | |||||||| | || |||||| | ||| Sbjct: 49613 tcaaagatttgaacaatgaaaatagatggcgggggcctgatctaatttatcaggtcatgt 49672 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 49673 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 49732 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 49733 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttgaat 49792 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | |||||||||||||||| ||| | ||| |||||||||||||||| ||| ||| Sbjct: 49793 tctcaaaacttctgtcgctccatgcccacaggggcagagaacccgtcgctgtatcgactg 49852 Query: 240 tgataccg 247 || ||||| Sbjct: 49853 tgctaccg 49860 Score = 149 bits (75), Expect = 5e-33 Identities = 207/248 (83%), Gaps = 11/248 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| | |||||||| | || |||||| | ||| Sbjct: 40215 tcaaagatttgaacaatgaaaatagatggcgggggcctgatctaatttatcaggtcatgt 40156 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 40155 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 40096 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 40095 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttgaat 40036 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | |||||||||||||||| ||| | ||| |||||||||||||||| ||| ||| Sbjct: 40035 tctcaaaacttctgtcgctccatgcccacaggggcagagaacccgtcgctgtatcgactg 39976 Query: 240 tgataccg 247 || ||||| Sbjct: 39975 tgctaccg 39968
>emb|X62099.1|CHEVIARRN E.virginiana plastid ribosomal RNA operon, trnI and trnA pseudogenes Length = 7395 Score = 149 bits (75), Expect = 5e-33 Identities = 207/248 (83%), Gaps = 11/248 (4%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| ||||||||| | |||||||| | || |||||| | ||| Sbjct: 7143 tcaaagatttgaacaatgaaaatagatggcgggggcctgatctaatttatcaggtcatgt 7084 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 7083 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 7024 Query: 130 ttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct--at 180 ||||||||||||||||| ||||||||||||||||||| |||||||| | || Sbjct: 7023 ttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttgaat 6964 Query: 181 t-tccatacttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctg 239 | || | |||||||||||||||| ||| | ||| |||||||||||||||| ||| ||| Sbjct: 6963 tctcaaaacttctgtcgctccatgcccacaggggcagagaacccgtcgctgtatcgactg 6904 Query: 240 tgataccg 247 || ||||| Sbjct: 6903 tgctaccg 6896
>gb|L41596.1|CYRCPITSA Cycas revoluta chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 513 Score = 147 bits (74), Expect = 2e-32 Identities = 170/199 (85%), Gaps = 11/199 (5%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 |||||| ||||| ||||||||| |||||| |||| | | ||||||| | ||||||||||| Sbjct: 295 ttgaacgatgaaaatagatggctagtgcccgatcaaatcgatcaggtcatgtaggaacaa 236 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 235 ggttcaaatctctcggtctgttaggatgcctcagctgcatgcatcactgcacttccactt 176 Query: 138 gacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccata 187 ||||||||| ||||||||||||||||||| |||||||| | ||| || ||| Sbjct: 175 gacacctatcgtgatgataaacggctcgtctcgccgtgaccttatcttggattctcaata 116 Query: 188 cttctgtcgctccatcccc 206 ||||||||||||||||||| Sbjct: 115 cttctgtcgctccatcccc 97
>gb|L29448.1|CYRCP Cycas revoluta chloroplast 23s - 5s ribosomal RNA genes, internal transcribed spacer Length = 535 Score = 147 bits (74), Expect = 2e-32 Identities = 170/199 (85%), Gaps = 11/199 (5%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 |||||| ||||| ||||||||| |||||| |||| | | ||||||| | ||||||||||| Sbjct: 326 ttgaacgatgaaaatagatggctagtgcccgatcaaatcgatcaggtcatgtaggaacaa 267 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 266 ggttcaaatctctcggtctgttaggatgcctcagctgcatgcatcactgcacttccactt 207 Query: 138 gacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccata 187 ||||||||| ||||||||||||||||||| |||||||| | ||| || ||| Sbjct: 206 gacacctatcgtgatgataaacggctcgtctcgccgtgaccttatcttggattctcaata 147 Query: 188 cttctgtcgctccatcccc 206 ||||||||||||||||||| Sbjct: 146 cttctgtcgctccatcccc 128
>gb|AC151668.38| Medicago truncatula clone mth2-6e22, complete sequence Length = 110949 Score = 145 bits (73), Expect = 8e-32 Identities = 122/137 (89%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||||||||||||| || ||||||||| | ||||||||||| ||||||||| | ||| Sbjct: 7298 tcaaagagttgaacaatcaaaatagatggcgattgcctgatcgaattgatcaggtcatgt 7239 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 | ||||||||||||| || || || ||||||||||||||||||||||||| ||||||| Sbjct: 7238 aagaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacattactgcac 7179 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 7178 ttccacttgacacctat 7162 Score = 65.9 bits (33), Expect = 6e-08 Identities = 57/65 (87%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 |||||| | |||||||||||| | ||| |||||||| ||||||| |||||||||||||| Sbjct: 7110 acttcttttgctccatccccgcaggggcagagaacccatcgctgtttcggctgtgatacc 7051 Query: 247 ggagg 251 ||||| Sbjct: 7050 ggagg 7046
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 145 bits (73), Expect = 8e-32 Identities = 122/137 (89%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||||||||||||| || ||||||||| | ||||||||||| ||||||||| | ||| Sbjct: 20627 tcaaagagttgaacaatcaaaatagatggcgattgcctgatcgaattgatcaggtcatgt 20686 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 | ||||||||||||| || || || ||||||||||||||||||||||||| ||||||| Sbjct: 20687 aagaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacattactgcac 20746 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 20747 ttccacttgacacctat 20763 Score = 65.9 bits (33), Expect = 6e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 |||||| | |||||||||||| | ||| |||||||| ||||||| |||||||||||||| Sbjct: 20815 acttcttttgctccatccccgcaggggcagagaacccatcgctgtttcggctgtgatacc 20874 Query: 247 ggagg 251 ||||| Sbjct: 20875 ggagg 20879
>emb|X06044.1|GMRN45SI Soybean 4.5 - 5S rRNA intergenic region Length = 472 Score = 145 bits (73), Expect = 8e-32 Identities = 122/137 (89%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| || |||| | ||||||||||||| |||||| | | ||| Sbjct: 182 tcaaagagttgaacaatgaaaatggatgactagtgcctgatcgaattgatcggatcatgt 123 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 122 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 63 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 62 ttccacttgacacctat 46
>gb|L41580.1|ALWCPITSA Alchemilla vulgaris chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 520 Score = 145 bits (73), Expect = 8e-32 Identities = 123/137 (89%), Gaps = 2/137 (1%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||| ||||||||||| ||||||||| ||||||||||| ||| |||| || | ||| Sbjct: 294 tcaaagagctgaacaatgaaaatagatggcgagtgcctgatcaatt-gatcgggtcatgt 236 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 235 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 176 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 175 ttccacttgacacctat 159
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 145 bits (73), Expect = 8e-32 Identities = 122/137 (89%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| || |||| | ||||||||||||| |||||| | | ||| Sbjct: 128786 tcaaagagttgaacaatgaaaatggatgactagtgcctgatcgaattgatcggatcatgt 128845 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 128846 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 128905 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 128906 ttccacttgacacctat 128922 Score = 145 bits (73), Expect = 8e-32 Identities = 122/137 (89%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| || |||| | ||||||||||||| |||||| | | ||| Sbjct: 106608 tcaaagagttgaacaatgaaaatggatgactagtgcctgatcgaattgatcggatcatgt 106549 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 106548 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 106489 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 106488 ttccacttgacacctat 106472 Score = 65.9 bits (33), Expect = 6e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 |||||| |||||||||||||| ||| |||||||| ||||||||||||||||| |||| Sbjct: 128974 acttctttcgctccatccccgctggggcagagaacccatcgctgtctcggctgtgctacc 129033 Query: 247 ggagg 251 ||||| Sbjct: 129034 ggagg 129038 Score = 65.9 bits (33), Expect = 6e-08 Identities = 57/65 (87%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 |||||| |||||||||||||| ||| |||||||| ||||||||||||||||| |||| Sbjct: 106420 acttctttcgctccatccccgctggggcagagaacccatcgctgtctcggctgtgctacc 106361 Query: 247 ggagg 251 ||||| Sbjct: 106360 ggagg 106356
>emb|X06235.1|MIOBRRNP Oenothera berteriana mitDNA with part of plastid rRNA operon Length = 2900 Score = 145 bits (73), Expect = 8e-32 Identities = 122/137 (89%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||| ||||||||||||| ||||||||| | ||||||||||| |||||| || | ||| Sbjct: 2678 tcaaagggttgaacaatgaaaatagatggcgaatgcctgatcgaattgatcgggtcatgt 2619 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||| ||||||||||||||||||||||| Sbjct: 2618 aggaacaaggttcaagtctaccggtctgttaggatgtctcagctgcatacatcactgcac 2559 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 2558 ttccacttgacacctat 2542 Score = 89.7 bits (45), Expect = 4e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 2491 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 2432 Query: 247 ggagg 251 ||||| Sbjct: 2431 ggagg 2427
>gb|AY840210.1| Cabomba caroliniana internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 811 Score = 139 bits (70), Expect = 5e-30 Identities = 114/126 (90%), Gaps = 2/126 (1%) Strand = Plus / Minus Query: 22 aacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaaggt 81 ||||||||| ||||||| | ||||||||||| | |||||| || | |||||||||||||| Sbjct: 264 aacaatgaaaatagatg-cgagtgcctgatcaaattgatcgggtcatgtaggaacaaggt 206 Query: 82 tcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttgac 140 ||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 tcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccacttgac 146 Query: 141 acctat 146 |||||| Sbjct: 145 acctat 140
>gb|AY305264.1| Cucumis melo clone M6-L12 orf124, orf118, tRNA-Met, and atp9 genes, complete sequence; and atp6 pseudogene, partial sequence; mitochondrial Length = 10403 Score = 137 bits (69), Expect = 2e-29 Identities = 121/137 (88%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||| ||||| |||||| || | ||| Sbjct: 883 tcaaagagttgaacaatgaaaatagatggcgagtgcctaatcgaattgatcgggtcatgt 942 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||| || || || || |||||||||||||| |||||||||||| ||||| Sbjct: 943 aggaacaaggtttaagtctaccggtctgttaggatgcctcaactgcatacatcattgcac 1002 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 1003 ttccacttgacacctat 1019 Score = 46.1 bits (23), Expect = 0.053 Identities = 53/63 (84%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 246 |||| |||||||||||| ||||| ||| |||||||| | ||||||| |||| || |||| Sbjct: 1070 acttttgtcgctccatctccgtaggggcagagaacccattgctgtcttggctatgctacc 1129 Query: 247 gga 249 ||| Sbjct: 1130 gga 1132
>gb|AF525938.2| Casuarina equisetifolia 23S ribosomal RNA and 4.5S ribosomal RNA genes, complete sequence; chloroplast Length = 3069 Score = 137 bits (69), Expect = 2e-29 Identities = 121/137 (88%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| || ||| ||||| |||||| || | ||| Sbjct: 2912 tcaaagagttgaacaatgaaaatagatggcgagcacctaatcgaattgatcgggtcatgt 2853 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || |||| |||||||||||||||||||||||||||| Sbjct: 2852 aggaacaaggttcaagtctaccggtctgttaagatgcctcagctgcatacatcactgcac 2793 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 2792 ttccacttgacacctat 2776
>gb|L41565.1|GBICPITSA Ginkgo biloba chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 516 Score = 137 bits (69), Expect = 2e-29 Identities = 116/129 (89%), Gaps = 2/129 (1%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 |||||||||||| ||||||| | ||||||||||| | ||||||| | ||||||||||| Sbjct: 293 ttgaacaatgaaaatagatg-ctagtgcctgatcagatcgatcaggtcatgtaggaacaa 235 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 234 ggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccactt 175 Query: 138 gacacctat 146 ||||||||| Sbjct: 174 gacacctat 166
>emb|AJ318074.1|CSA318074 Cucumis sativus chloroplast ccsA gene, ndhD gene (partial), 4.5S rRNA gene, 23S rRNA gene (partial) and 5S rRNA gene Length = 6689 Score = 137 bits (69), Expect = 2e-29 Identities = 121/137 (88%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||||||| ||||||| |||| |||||| || | ||| Sbjct: 3122 tcaaagagttgaacaatgaaaatagatggcgagtgcctaatcgcattgatcgggtcatgt 3063 Query: 71 aggaacaaggttcaaatcgttcgttcg-ttaggatgcctcagctgcatacatcactgcac 129 ||||| ||||||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 3062 aggaagaaggttcaagtctaccggtctcttaggatgcctcagctgcatacatcactgcac 3003 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 3002 ttccacttgacacctat 2986 Score = 52.0 bits (26), Expect = 9e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 218 gaacccgtcgctgtctcggctgtgataccggagg 251 |||||| ||||||||||||||||| ||||||||| Sbjct: 2910 gaacccatcgctgtctcggctgtgctaccggagg 2877
>emb|X55033.1|CHPSRRNAO P.sativum chloroplast DNA of the single ribosomal RNA operon Length = 7920 Score = 137 bits (69), Expect = 2e-29 Identities = 121/137 (88%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||| |||||||| || ||||||| | ||||||||||||| |||| |||| | ||| Sbjct: 7564 tcaaagaggtgaacaataaaaatagatgacgagtgcctgatcgaattgaccaggtcatgt 7505 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || ||| || ||||||||||||||||||||||||| |||| || Sbjct: 7504 aggaacaaggttcaagtctatcggtctgttaggatgcctcagctgcatacattactgtac 7445 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 7444 ttccacttgacacctat 7428
>gb|M37430.1|PEACPDKAA Pea Chloroplast 4.5S, 5S, 16S and 23S mRNA Length = 7920 Score = 137 bits (69), Expect = 2e-29 Identities = 121/137 (88%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||| |||||||| || ||||||| | ||||||||||||| |||| |||| | ||| Sbjct: 7564 tcaaagaggtgaacaataaaaatagatgacgagtgcctgatcgaattgaccaggtcatgt 7505 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || ||| || ||||||||||||||||||||||||| |||| || Sbjct: 7504 aggaacaaggttcaagtctatcggtctgttaggatgcctcagctgcatacattactgtac 7445 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 7444 ttccacttgacacctat 7428
>gb|M75719.1|ALSCPRRNA Alnus incana chloroplast 23S rRNA, 4.5S rRNA, 5S rRNA, tRNA-Arg, and tRNA-Asn genes Length = 1981 Score = 131 bits (66), Expect = 1e-27 Identities = 123/137 (89%), Gaps = 5/137 (3%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 |||||||||||||||||||| ||||| || ||||||||||||| |||||| || | ||| Sbjct: 587 tcaaagagttgaacaatgaa-ataga--gcgagtgcctgatcgaattgatc-ggtcatgt 532 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 531 aggaacaaggttcaagtctaccggtctgttaggatgcctcagctgcatacatcactgcac 472 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 471 ttccacttgacacctat 455 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 216 gagaacccgtcgctgtctcggctgtgataccggag 250 |||||||| ||||||||||||||||| |||||||| Sbjct: 377 gagaacccatcgctgtctcggctgtgctaccggag 343
>emb|AJ001025.1|CLPACHLLN Picea abies chloroplast DNA for chlL, trnR, trnH, trnN, 23S rRNA, 4.5S rRNA and 5S rRNA genes Length = 4027 Score = 123 bits (62), Expect = 3e-25 Identities = 167/199 (83%), Gaps = 11/199 (5%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 |||||||| || ||||||||| |||||| |||| | |||| || | ||||||||||| Sbjct: 872 ttgaacaaataaaatagatggctagtgcccgatcagatcgatcgggtcatgtaggaacaa 813 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 812 ggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactgcacttccactt 753 Query: 138 gacacctat-------ttaaacggctcgtctcgccgctaccttatcct--att-tccata 187 ||||||||| ||||||||||||||||||| |||||||| | ||| || ||| Sbjct: 752 gacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttggattctcaata 693 Query: 188 cttctgtcgctccatcccc 206 ||| ||||||||||||||| Sbjct: 692 cttttgtcgctccatcccc 674
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 121 bits (61), Expect = 1e-24 Identities = 130/150 (86%), Gaps = 11/150 (7%) Strand = Plus / Minus Query: 68 tgtaggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactg 126 ||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| Sbjct: 89282 tgtaggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactg 89223 Query: 127 cacttccacttgacacctat-------ttaaacggctcgtctcgccgctaccttatcct- 178 |||||||||||||||||||| ||||||||||||||||||| |||||||| | Sbjct: 89222 cacttccacttgacacctatcgtaatgataaacggctcgtctcgccgtgaccttatcttg 89163 Query: 179 -att-tccatacttctgtcgctccatcccc 206 ||| || |||||| ||||||||||||||| Sbjct: 89162 gattctcaatacttttgtcgctccatcccc 89133
>gb|L41585.1|PINCPITSA Pinus canariensis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 509 Score = 121 bits (61), Expect = 1e-24 Identities = 130/150 (86%), Gaps = 11/150 (7%) Strand = Plus / Minus Query: 68 tgtaggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactg 126 ||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| Sbjct: 246 tgtaggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactg 187 Query: 127 cacttccacttgacaccta-------tttaaacggctcgtctcgccgctaccttatcct- 178 ||||||||||||||||||| | ||||||||||||||||||| |||||||| | Sbjct: 186 cacttccacttgacacctatcataattataaacggctcgtctcgccgtgaccttatcttg 127 Query: 179 -att-tccatacttctgtcgctccatcccc 206 ||| || |||||| ||||||||||||||| Sbjct: 126 gattctcaatacttttgtcgctccatcccc 97
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 121 bits (61), Expect = 1e-24 Identities = 130/150 (86%), Gaps = 11/150 (7%) Strand = Plus / Minus Query: 68 tgtaggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactg 126 ||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| Sbjct: 91370 tgtaggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacatcactg 91311 Query: 127 cacttccacttgacaccta-------tttaaacggctcgtctcgccgctaccttatcct- 178 ||||||||||||||||||| | ||||||||||||||||||| |||||||| | Sbjct: 91310 cacttccacttgacacctatcataattataaacggctcgtctcgccgtgaccttatcttg 91251 Query: 179 -att-tccatacttctgtcgctccatcccc 206 ||| || |||||| ||||||||||||||| Sbjct: 91250 gattctcaatacttttgtcgctccatcccc 91221
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476H10 Length = 151703 Score = 119 bits (60), Expect = 4e-24 Identities = 63/64 (98%) Strand = Plus / Minus Query: 188 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 53121 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccg 53062 Query: 248 gagg 251 |||| Sbjct: 53061 gagg 53058
>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0475F05 Length = 147522 Score = 119 bits (60), Expect = 4e-24 Identities = 63/64 (98%) Strand = Plus / Minus Query: 188 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 121085 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccg 121026 Query: 248 gagg 251 |||| Sbjct: 121025 gagg 121022
>emb|AJ535053.1|OSA535053 Oryza sativa (japonica cultivar-group) pdr2 gene for PDR-like ABC transporter, exons 1-22 Length = 15112 Score = 119 bits (60), Expect = 4e-24 Identities = 63/64 (98%) Strand = Plus / Plus Query: 188 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4537 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccg 4596 Query: 248 gagg 251 |||| Sbjct: 4597 gagg 4600
>gb|AF518408.1| Megaceros tosanus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 711 Score = 117 bits (59), Expect = 2e-23 Identities = 111/127 (87%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 22 aacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaaggt 81 |||||||||||||| |||| |||||||||| | |||||| | |||||||||||||| Sbjct: 273 aacaatgaagataggtggctagtgcctgataaaggcaatcaggtcatgtaggaacaaggt 214 Query: 82 tcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttgac 140 ||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||| | Sbjct: 213 tcaaatctctcggtctgttaggatgcctcagctgcatacattactgcacttccacttggc 154 Query: 141 acctatt 147 ||||||| Sbjct: 153 acctatt 147
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 117 bits (59), Expect = 2e-23 Identities = 111/127 (87%), Gaps = 1/127 (0%) Strand = Plus / Plus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| |||| |||||||||| || | |||||| ||||||||||||||| Sbjct: 143469 gaacaatgaagataggtggctagtgcctgatagaatcaatcaggtcgtgtaggaacaagg 143528 Query: 81 ttcaaatc-gttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| || || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 143529 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 143588 Query: 140 cacctat 146 ||||||| Sbjct: 143589 cacctat 143595 Score = 117 bits (59), Expect = 2e-23 Identities = 111/127 (87%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| |||| |||||||||| || | |||||| ||||||||||||||| Sbjct: 114993 gaacaatgaagataggtggctagtgcctgatagaatcaatcaggtcgtgtaggaacaagg 114934 Query: 81 ttcaaatc-gttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| || || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 114933 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 114874 Query: 140 cacctat 146 ||||||| Sbjct: 114873 cacctat 114867
>gb|AF426188.1| Takakia lepidozioides 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 816 Score = 111 bits (56), Expect = 1e-21 Identities = 164/197 (83%), Gaps = 11/197 (5%) Strand = Plus / Minus Query: 20 tgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaag 79 |||||||||||||||| |||| |||||||||| |||||| | |||||||||||| Sbjct: 279 tgaacaatgaagataggtggctagtgcctgataagaacaatcaggtcatgtaggaacaag 220 Query: 80 gttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttg 138 ||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 219 gttcaaatctctcggtctgttaggatgcctcagctgcatacattactgcacttccacttg 160 Query: 139 acacctatt-------taaacggctcgtctcgccgctaccttatcct--att-tccatac 188 ||||||| |||||||||||||| |||| |||||||| | ||| || |||| Sbjct: 159 gcacctatcgtgatgataaacggctcgtcttgccgtgaccttatcttggattctcaatac 100 Query: 189 ttctgtcgctccatccc 205 ||||||||||||||||| Sbjct: 99 ttctgtcgctccatccc 83
>gb|AF338745.1| Huperzia phlegmarioides 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 793 Score = 109 bits (55), Expect = 4e-21 Identities = 110/127 (86%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| |||| |||||||||| || | ||||| ||||||||||||||| Sbjct: 268 gaacaatgaagataggtggctagtgcctgatagaatcaatcagatcgtgtaggaacaagg 209 Query: 81 ttcaaatc-gttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| || || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 208 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 149 Query: 140 cacctat 146 ||||||| Sbjct: 148 cacctat 142
>gb|AF338744.1| Huperzia verticillata 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 791 Score = 109 bits (55), Expect = 4e-21 Identities = 110/127 (86%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| |||| |||||||||| || | ||||| ||||||||||||||| Sbjct: 264 gaacaatgaagataggtggctagtgcctgatagaatcaatcagatcgtgtaggaacaagg 205 Query: 81 ttcaaatc-gttcgttcgttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| || || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 204 ttcaaatctattggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 145 Query: 140 cacctat 146 ||||||| Sbjct: 144 cacctat 138
>gb|AF338754.1| Lycopodium scariosum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 813 Score = 105 bits (53), Expect = 7e-20 Identities = 111/129 (86%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 ||||||||||||||||| |||| |||||||||| | | |||||| | ||||||||||| Sbjct: 274 ttgaacaatgaagataggtggctagtgcctgataaaatcaatcaggtcatgtaggaacaa 215 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| | | || ||||||||||||||||||||||||| |||| | |||||||| Sbjct: 214 ggttcaaatcccttggtctgttaggatgcctcagctgcatacattactgtatttccactt 155 Query: 138 gacacctat 146 | ||||||| Sbjct: 154 ggcacctat 146
>gb|L41556.1|ZAMCPITSA Zamia floridiana chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 513 Score = 105 bits (53), Expect = 7e-20 Identities = 72/77 (93%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||||| ||| || ||||||||||||||||||||| ||||||||||| Sbjct: 245 aggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatgcatcactgcac 186 Query: 130 ttccacttgacacctat 146 ||||||||||||||||| Sbjct: 185 ttccacttgacacctat 169
>gb|L41549.1|OSMCPITSA Osmunda regalis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 530 Score = 103 bits (52), Expect = 3e-19 Identities = 92/104 (88%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 44 tgcctgatcgatttgatcaggccgtgtaggaacaaggttcaaatcgttcgttc-gttagg 102 |||||||||| || |||||| | ||||||||||||||||||||| ||| || |||||| Sbjct: 271 tgcctgatcggattaatcaggtcatgtaggaacaaggttcaaatctctcggtctgttagg 212 Query: 103 atgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||||||||| ||||||||||||||| ||||||| Sbjct: 211 atgcctcagctgcatacattactgcacttccacttagcacctat 168
>gb|AF518407.1| Pogonatum urnigerum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 673 Score = 101 bits (51), Expect = 1e-18 Identities = 73/79 (92%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 225 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 166 Query: 129 cttccacttgacacctatt 147 |||||||||| |||||||| Sbjct: 165 cttccacttggcacctatt 147
>gb|AF518406.1| Polytrichum formosum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 669 Score = 101 bits (51), Expect = 1e-18 Identities = 73/79 (92%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 225 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 166 Query: 129 cttccacttgacacctatt 147 |||||||||| |||||||| Sbjct: 165 cttccacttggcacctatt 147
>gb|AF338743.1| Huperzia hippuridea 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 796 Score = 101 bits (51), Expect = 1e-18 Identities = 110/127 (86%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| || | |||||||||| || | |||||| ||||||||||||||| Sbjct: 267 gaacaatgaagataggtg-ctagtgcctgatagaatcaatcaggtcgtgtaggaacaagg 209 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| | | || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 208 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 149 Query: 140 cacctat 146 ||||||| Sbjct: 148 cacctat 142
>gb|AF338741.1| Huperzia campiana 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 791 Score = 101 bits (51), Expect = 1e-18 Identities = 110/127 (86%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| || | |||||||||| || | |||||| ||||||||||||||| Sbjct: 267 gaacaatgaagataggtg-ctagtgcctgatagaatcaatcaggtcgtgtaggaacaagg 209 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| | | || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 208 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 149 Query: 140 cacctat 146 ||||||| Sbjct: 148 cacctat 142
>gb|AF338740.1| Huperzia cumingii 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 789 Score = 101 bits (51), Expect = 1e-18 Identities = 110/127 (86%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| || | |||||||||| || | |||||| ||||||||||||||| Sbjct: 267 gaacaatgaagataggtg-ctagtgcctgatagaatcaatcaggtcgtgtaggaacaagg 209 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| | | || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 208 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 149 Query: 140 cacctat 146 ||||||| Sbjct: 148 cacctat 142
>gb|AF338738.1| Huperzia wilsonii 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 797 Score = 101 bits (51), Expect = 1e-18 Identities = 110/127 (86%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| || | |||||||||| || | |||||| ||||||||||||||| Sbjct: 267 gaacaatgaagataggtg-ctagtgcctgatagaatcaatcaggtcgtgtaggaacaagg 209 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| | | || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 208 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 149 Query: 140 cacctat 146 ||||||| Sbjct: 148 cacctat 142
>gb|AF338737.1| Huperzia selago 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 800 Score = 101 bits (51), Expect = 1e-18 Identities = 110/127 (86%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| || | |||||||||| || | |||||| ||||||||||||||| Sbjct: 267 gaacaatgaagataggtg-ctagtgcctgatagaatcaatcaggtcgtgtaggaacaagg 209 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| | | || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 208 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 149 Query: 140 cacctat 146 ||||||| Sbjct: 148 cacctat 142
>gb|M35407.1|COMCPRR45S C.communis chloroplast 4.5S ribosomal RNA Length = 103 Score = 101 bits (51), Expect = 1e-18 Identities = 76/85 (89%), Gaps = 7/85 (8%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat-------tta 149 ||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct: 85 gttaggatgcctcagctgcatacattactgcacttccacttgacacctatcgtaatgata 26 Query: 150 aacggctcgtctcgccgctacctta 174 ||||||||||||||||||||||||| Sbjct: 25 aacggctcgtctcgccgctacctta 1
>gb|U53856.1|ATU53856 Arabidopsis thaliana glutathione synthetase (gsh2) gene, complete cds Length = 4374 Score = 99.6 bits (50), Expect = 4e-18 Identities = 78/86 (90%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 58 gatcaggccgtgtaggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgca 116 ||||||| | |||||||||||||||||| || || || |||||||||||||||||||| Sbjct: 544 gatcaggtcatgtaggaacaaggttcaagtctaccggtctgttaggatgcctcagctgca 485 Query: 117 tacatcactgcacttccacttgacac 142 |||||||||||||||||||||||||| Sbjct: 484 tacatcactgcacttccacttgacac 459
>gb|AF426192.1| Funaria hygrometrica 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 706 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 223 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 164 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 163 cttccacttggcacctat 146
>gb|AF426191.1| Physcomitrium pyriforme 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 695 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 222 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 163 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 162 cttccacttggcacctat 145
>gb|AF426190.1| Plagiomnium ellipticum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 743 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 223 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 164 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 163 cttccacttggcacctat 146
>gb|AF426189.1| Splachnum luteum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 737 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 223 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 164 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 163 cttccacttggcacctat 146
>gb|AF033649.1| Racomitrium microcarpum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 752 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 237 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 178 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 177 cttccacttggcacctat 160
>gb|AF033648.1|AF033648 Sphagnum palustre 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 789 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 244 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 185 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 184 cttccacttggcacctat 167
>gb|AF033646.1|AF033646 Ceratodon purpureus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 761 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 237 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 178 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 177 cttccacttggcacctat 160
>gb|AF033645.1|AF033645 Pleurozium schreberi 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 766 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 232 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 173 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 172 cttccacttggcacctat 155
>gb|AF033644.1| Climacium dendroides 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 767 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 234 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 175 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 174 cttccacttggcacctat 157
>gb|AF033643.1|AF033643 Tetraphis pellucida 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 772 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 239 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 180 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 179 cttccacttggcacctat 162
>gb|AF033642.1| Hylocomium splendens 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 765 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 235 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 176 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 175 cttccacttggcacctat 158
>gb|AF033641.1| Schistostega pennata 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 761 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 237 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 178 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 177 cttccacttggcacctat 160
>gb|AF033640.1| Homalia trichomanoides 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 770 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 237 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 178 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 177 cttccacttggcacctat 160
>gb|AF033639.1| Orthotrichum speciosum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 734 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 240 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 181 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 180 cttccacttggcacctat 163
>gb|AF033638.1|AF033638 Atrichum undulatum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 778 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 239 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 180 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 179 cttccacttggcacctat 162
>gb|AF033636.1|AF033636 Rhodobryum roseum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 702 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 238 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 179 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 178 cttccacttggcacctat 161
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Plus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 115117 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 115176 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 115177 cttccacttggcacctat 115194 Score = 99.6 bits (50), Expect = 4e-18 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| Sbjct: 92985 taggaacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgca 92926 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 92925 cttccacttggcacctat 92908
>emb|X04977.1|CHSORN45 Spinach chloroplast 4.5S rRNA gene and 23S rRNA gene 3'end Length = 323 Score = 99.6 bits (50), Expect = 4e-18 Identities = 95/110 (86%), Gaps = 10/110 (9%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatt-------ta 149 |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 305 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 246 Query: 150 aacggctcgtctcgccgctaccttatcctatttccatacttctgtcgctc 199 ||||||||||||||||| ||||| || |||||| ||||||||||||| Sbjct: 245 aacggctcgtctcgccgtgacctt---ctctttccaaacttctgtcgctc 199
>gb|M33098.1|TOMCPKA Tomato chloroplast 4.5S ribosomal RNA Length = 103 Score = 99.6 bits (50), Expect = 4e-18 Identities = 50/50 (100%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 36
>gb|M10757.1|SPICPRRK Spinach chloroplast 4.5S rRNA Length = 106 Score = 99.6 bits (50), Expect = 4e-18 Identities = 50/50 (100%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 39
>gb|M36165.1|LIGCPCG L.calthifolia chloroplast 4.5S rRNA gene Length = 103 Score = 99.6 bits (50), Expect = 4e-18 Identities = 50/50 (100%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 36
>gb|AF338755.1| Lycopodium annotinum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 821 Score = 97.6 bits (49), Expect = 2e-17 Identities = 110/129 (85%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 ||||||||||| ||||| |||| |||||||||| | | |||||| | ||||||||||| Sbjct: 274 ttgaacaatgaggataggtggctagtgcctgataaaatcaatcaggtcatgtaggaacaa 215 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| | | || ||||||||||||||||||||||||| |||| | |||||||| Sbjct: 214 ggttcaaatcccttggtctgttaggatgcctcagctgcatacattactgtatttccactt 155 Query: 138 gacacctat 146 | ||||||| Sbjct: 154 ggcacctat 146
>gb|AF338752.1| Lycopodium obscurum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 806 Score = 97.6 bits (49), Expect = 2e-17 Identities = 110/129 (85%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 |||||||||| |||||| |||| |||||||||| | | |||||| | ||||||||||| Sbjct: 270 ttgaacaatggagataggtggctagtgcctgataaaatcaatcaggtcatgtaggaacaa 211 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| | | || ||||||||||||||||||||||||| |||| | |||||||| Sbjct: 210 ggttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccactt 151 Query: 138 gacacctat 146 | ||||||| Sbjct: 150 ggcacctat 142
>gb|L41581.1|ANECPITSA Angiopteris palmiformis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 526 Score = 97.6 bits (49), Expect = 2e-17 Identities = 80/89 (89%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 59 atcaggccgtgtaggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcat 117 |||||| | ||||||||||||||||||| | ||| || ||||||||||||||||||||| Sbjct: 255 atcaggtcatgtaggaacaaggttcaaacctctcggtctgttaggatgcctcagctgcat 196 Query: 118 acatcactgcacttccacttgacacctat 146 |||| |||||||||||||||| ||||||| Sbjct: 195 acattactgcacttccacttggcacctat 167
>gb|AF033631.1| Aneura pinguis 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 611 Score = 97.6 bits (49), Expect = 2e-17 Identities = 80/89 (89%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 59 atcaggccgtgtaggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcat 117 |||||||| ||||||| ||||||||||||| ||| || ||||||||||||||||| ||| Sbjct: 218 atcaggccatgtaggagcaaggttcaaatctctcggtctgttaggatgcctcagctacat 159 Query: 118 acatcactgcacttccacttgacacctat 146 |||||||||||||||||| || ||||||| Sbjct: 158 acatcactgcacttccacctggcacctat 130
>gb|AF033629.1| Ptilidium pulcherrimum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 668 Score = 97.6 bits (49), Expect = 2e-17 Identities = 110/129 (85%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 |||||||||||| | || |||| ||| ||||| | ||| ||||| || ||||| ||||| Sbjct: 257 ttgaacaatgaacagaggtggctagtatctgattgtttttatcagaccatgtagaaacaa 198 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| ||| || ||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 197 ggttcaaatctctcggtctgttaggatgcctcagctacatacattactgcacttccactt 138 Query: 138 gacacctat 146 | ||||||| Sbjct: 137 ggcacctat 129
>gb|L41555.1|WELCPITSA Welwitschia mirabilis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 474 Score = 95.6 bits (48), Expect = 6e-17 Identities = 73/80 (91%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 68 tgtaggaacaaggttcaaatcgttcgttcgtt-aggatgcctcagctgcatacatcactg 126 ||||||||||||||||||||| ||| || || ||||||||||||||||||||||||||| Sbjct: 224 tgtaggaacaaggttcaaatctctcggtcttttaggatgcctcagctgcatacatcactg 165 Query: 127 cacttccacttgacacctat 146 || |||||||||||||||| Sbjct: 164 catctccacttgacacctat 145
>gb|L41601.1|EPKCPITSA Ephedra kokanica chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 483 Score = 95.6 bits (48), Expect = 6e-17 Identities = 73/80 (91%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 68 tgtaggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactg 126 ||||| ||||||||||||||| ||| || ||||||||| ||||||||||| |||||||| Sbjct: 202 tgtagaaacaaggttcaaatctctcggtctgttaggatgtctcagctgcatgcatcactg 143 Query: 127 cacttccacttgacacctat 146 |||||||||||||||||||| Sbjct: 142 cacttccacttgacacctat 123
>gb|AF338746.1| Huperzia linifolia 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 789 Score = 93.7 bits (47), Expect = 3e-16 Identities = 109/127 (85%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| || | |||||||||| || | |||||| | ||||||||||||| Sbjct: 267 gaacaatgaagataggtg-ctagtgcctgatagaatcaatcaggtcatgtaggaacaagg 209 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| | | || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 208 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 149 Query: 140 cacctat 146 ||||||| Sbjct: 148 cacctat 142
>gb|AF338742.1| Huperzia hippuris 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 791 Score = 93.7 bits (47), Expect = 3e-16 Identities = 109/127 (85%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| || | |||||||||| || | ||||| ||||||||||||||| Sbjct: 267 gaacaatgaagataggtg-ctagtgcctgatagaatcaatcagatcgtgtaggaacaagg 209 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| | | || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 208 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 149 Query: 140 cacctat 146 ||||||| Sbjct: 148 cacctat 142
>gb|AF338739.1| Huperzia billardieri 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 785 Score = 93.7 bits (47), Expect = 3e-16 Identities = 109/127 (85%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| || | |||||||||| || | ||||| ||||||||||||||| Sbjct: 267 gaacaatgaagataggtg-ctagtgcctgatagaatcaatcagatcgtgtaggaacaagg 209 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| | | || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 208 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 149 Query: 140 cacctat 146 ||||||| Sbjct: 148 cacctat 142
>gb|AF426182.1| Phaeoceros carolinianus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 822 Score = 93.7 bits (47), Expect = 3e-16 Identities = 108/127 (85%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 22 aacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaaggt 81 |||||||||||||| |||| |||||||||| | |||||| | ||||| |||||||| Sbjct: 273 aacaatgaagataggtggctagtgcctgataaaggcaatcaggtcatgtagaaacaaggt 214 Query: 82 tcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttgac 140 ||||||| | | || ||||| ||||||||||||||||||| |||||||||||||||| | Sbjct: 213 tcaaatctcttggtctgttagaatgcctcagctgcatacattactgcacttccacttggc 154 Query: 141 acctatt 147 ||||||| Sbjct: 153 acctatt 147
>gb|AF426181.1| Notothylas breutelii 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 822 Score = 93.7 bits (47), Expect = 3e-16 Identities = 108/127 (85%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 22 aacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaaggt 81 |||||||||||||| |||| |||||||||| | |||||| | ||||| |||||||| Sbjct: 273 aacaatgaagataggtggctagtgcctgataaaggcaatcaggtcatgtagaaacaaggt 214 Query: 82 tcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttgac 140 ||||||| | | || ||||| ||||||||||||||||||| |||||||||||||||| | Sbjct: 213 tcaaatctcttggtctgttagaatgcctcagctgcatacattactgcacttccacttggc 154 Query: 141 acctatt 147 ||||||| Sbjct: 153 acctatt 147
>gb|L41567.1|LCUCPITSA Lycopodium bifurcatum chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 508 Score = 93.7 bits (47), Expect = 3e-16 Identities = 109/127 (85%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| || | |||||||||| || | ||||| ||||||||||||||| Sbjct: 286 gaacaatgaagataggtg-ctagtgcctgatagaatcaatcagatcgtgtaggaacaagg 228 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| | | || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 227 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 168 Query: 140 cacctat 146 ||||||| Sbjct: 167 cacctat 161
>emb|X05876.1|CHSORN5S Spinach chloroplast gene for 5S ribosomal Length = 644 Score = 93.7 bits (47), Expect = 3e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| |||||||||||| || |||||| ||||||||||||| |||||| |||| ||| Sbjct: 102 tcaaagaattgaacaatgaaaatggatggcgagtgcctgatcgaattgatcgggccatgt 43 Query: 71 aggaacaaggttcaa 85 ||||||||||||||| Sbjct: 42 aggaacaaggttcaa 28
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 91.7 bits (46), Expect = 1e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 128 acttccacttgacacctatttaaacggctcgtctcgccgctaccttatcctatttccata 187 ||||| ||| |||||||||| |||||| ||||||| ||||| ||||||||||||||| Sbjct: 107405 acttctactagacacctattcaaacggttcgtctcattactaccgtatcctatttccata 107464 Query: 188 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtg 241 ||||| |||||||||||| ||| | ||| |||||| || |||||||||||||| Sbjct: 107465 cttctatcgctccatcccggtaagagtgaagaacctgttactgtctcggctgtg 107518 Score = 77.8 bits (39), Expect = 1e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 25 aatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaaggttca 84 |||||| |||||||| | |||| ||||||||||||||| | ||||||| | | ||||||| Sbjct: 107249 aatgaatatagatggtacgtgcatgatcgatttgatcatgtcgtgtagaatccaggttca 107308 Query: 85 aatcgttcgttcgttaggatgcctcagctgcatac 119 ||| ||| |||| ||||||| ||| |||||||||| Sbjct: 107309 aatagtttgttcattaggataccttagctgcatac 107343
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 91.7 bits (46), Expect = 1e-15 Identities = 49/50 (98%) Strand = Plus / Plus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 139895 gttaggatgtctcagctgcatacatcactgcacttccacttgacacctat 139944 Score = 91.7 bits (46), Expect = 1e-15 Identities = 49/50 (98%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 113433 gttaggatgtctcagctgcatacatcactgcacttccacttgacacctat 113384 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgt 231 ||||||||||||||||||||| | ||| |||||||||||||||| Sbjct: 139995 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgt 140039 Score = 58.0 bits (29), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 187 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgt 231 ||||||||||||||||||||| | ||| |||||||||||||||| Sbjct: 113333 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgt 113289 Score = 46.1 bits (23), Expect = 0.053 Identities = 38/43 (88%) Strand = Plus / Plus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcg 53 |||||| ||||||||||||| || |||||| | |||||||||| Sbjct: 139817 tcaaagggttgaacaatgaaaatcgatggcgaatgcctgatcg 139859 Score = 46.1 bits (23), Expect = 0.053 Identities = 38/43 (88%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcg 53 |||||| ||||||||||||| || |||||| | |||||||||| Sbjct: 113511 tcaaagggttgaacaatgaaaatcgatggcgaatgcctgatcg 113469
>gb|AF033647.1|AF033647 Rhytidiadelphus triquetrus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 789 Score = 91.7 bits (46), Expect = 1e-15 Identities = 68/74 (91%), Gaps = 1/74 (1%) Strand = Plus / Minus Query: 74 aacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttc 132 ||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||| Sbjct: 233 aacaaggttcaaatctctcggtctgttaggatgcctcagctgcatacattactgcacttc 174 Query: 133 cacttgacacctat 146 |||||| ||||||| Sbjct: 173 cacttggcacctat 160
>gb|U28402.1|LLU28402 Lupinus luteus 23S/4.5S intergenic region, complete sequence, 4.5S ribosomal RNA gene, complete sequence and 4.5S/5S intergenic region, partial sequence, chloroplast gene for chloroplast RNA Length = 228 Score = 91.7 bits (46), Expect = 1e-15 Identities = 49/50 (98%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 181 gttaggatgcctccgctgcatacatcactgcacttccacttgacacctat 132 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 217 agaacccgtcgctgtctcggctgtgataccggagg 251 ||||||| ||||||||||||||||| ||||||||| Sbjct: 53 agaacccatcgctgtctcggctgtgctaccggagg 19
>gb|M35404.1|APICPRR45S A.graveoleus chloroplast 4.5S ribosomal RNA Length = 103 Score = 91.7 bits (46), Expect = 1e-15 Identities = 49/50 (98%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 85 gttaggatgcctcagctgcatacatcactgcacttccactagacacctat 36
>gb|M36166.1|ACUCPCG A.calamus chloroplast 4.5S rRNA gene Length = 103 Score = 91.7 bits (46), Expect = 1e-15 Identities = 49/50 (98%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 85 gttaggatgcctcagctgcatacatcactgcacttccacttggcacctat 36
>emb|X58863.1|CARRN455 C.americana plastid 4.5S rRNA and 5S rRNA genes and spacer region Length = 429 Score = 89.7 bits (45), Expect = 4e-15 Identities = 116/137 (84%), Gaps = 2/137 (1%) Strand = Plus / Minus Query: 11 tcaaagagttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgt 70 ||||||| ||||||||| || ||| ||||| || ||||||| ||| |||||| | ||| Sbjct: 185 tcaaagatttgaacaattaaaatatatggcgcgttcctgatcaattc-atcaggtcatgt 127 Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 ||||||||||||||| || || || ||||||| |||||||||||||||||||||||| Sbjct: 126 aggaacaaggttcaagtctaccggtctgttaggagtcctcagctgcatacatcactgcac 67 Query: 130 ttccacttgacacctat 146 ||| ||||||||||||| Sbjct: 66 ttctacttgacacctat 50
>gb|AF338759.1| Lycopodium clavatum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 804 Score = 89.7 bits (45), Expect = 4e-15 Identities = 110/129 (85%), Gaps = 2/129 (1%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 ||||||||||||||||| || | |||||||||| | | |||||| | ||||||||||| Sbjct: 269 ttgaacaatgaagataggtg-ctagtgcctgataaaatcaatcaggtcatgtaggaacaa 211 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| | | || ||||||||||||||||||||||||| |||| | |||||||| Sbjct: 210 ggttcaaatcccttggtctgttaggatgcctcagctgcatacattactgtatttccactt 151 Query: 138 gacacctat 146 | ||||||| Sbjct: 150 ggcacctat 142
>gb|AF338758.1| Lycopodium alpinum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 785 Score = 89.7 bits (45), Expect = 4e-15 Identities = 110/129 (85%), Gaps = 2/129 (1%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 ||||||||||||||||| || | |||||||||| | | |||||| | ||||||||||| Sbjct: 269 ttgaacaatgaagataggtg-ctagtgcctgataaaatcaatcaggtcatgtaggaacaa 211 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| | | || ||||||||||||||||||||||||| |||| | |||||||| Sbjct: 210 ggttcaaatcccttggtctgttaggatgcctcagctgcatacattactgtatttccactt 151 Query: 138 gacacctat 146 | ||||||| Sbjct: 150 ggcacctat 142
>gb|AF338757.1| Lycopodium fastigiatum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 804 Score = 89.7 bits (45), Expect = 4e-15 Identities = 110/129 (85%), Gaps = 2/129 (1%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 ||||||||||||||||| || | |||||||||| | | |||||| | ||||||||||| Sbjct: 269 ttgaacaatgaagataggtg-ctagtgcctgataaaatcaatcaggtcatgtaggaacaa 211 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| | | || ||||||||||||||||||||||||| |||| | |||||||| Sbjct: 210 ggttcaaatcccttggtctgttaggatgcctcagctgcatacattactgtatttccactt 151 Query: 138 gacacctat 146 | ||||||| Sbjct: 150 ggcacctat 142
>gb|AF338756.1| Lycopodium deuterodensum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 801 Score = 89.7 bits (45), Expect = 4e-15 Identities = 110/129 (85%), Gaps = 2/129 (1%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaa 78 ||||||||||||||||| || | |||||||||| | | |||||| | ||||||||||| Sbjct: 269 ttgaacaatgaagataggtg-ctagtgcctgataaaatcaatcaggtcatgtaggaacaa 211 Query: 79 ggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccactt 137 |||||||||| | | || ||||||||||||||||||||||||| |||| | |||||||| Sbjct: 210 ggttcaaatcccttggtctgttaggatgcctcagctgcatacattactgtatttccactt 151 Query: 138 gacacctat 146 | ||||||| Sbjct: 150 ggcacctat 142
>gb|M35406.1|ALCCPRR45S A.tuberosum chloroplast 4.5S ribosomal RNA Length = 103 Score = 89.7 bits (45), Expect = 4e-15 Identities = 48/49 (97%) Strand = Plus / Minus Query: 98 ttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 84 ttaggatgcctcagctgcatacatcactgcacttccactagacacctat 36
>emb|AJ007508.1|GGN7508 Gnetum gnemon chloroplast psaC, ccsA, 4.5S rRNA, 5S rRNA, 16S rRNA (partial), 23S rRNA, and tRNA (Leu, Asn, Arg, Ala and Ile) genes Length = 9493 Score = 87.7 bits (44), Expect = 2e-14 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 68 tgtaggaacaaggttcaaatcgttcgttcgtt-aggatgcctcagctgcatacatcactg 126 ||||||||||||||||||||| ||| || || |||||||||||||||||||||| |||| Sbjct: 3546 tgtaggaacaaggttcaaatctctcggtcttttaggatgcctcagctgcatacattactg 3605 Query: 127 cacttccacttgacacctat 146 || |||||||||||||||| Sbjct: 3606 catctccacttgacacctat 3625
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 87.7 bits (44), Expect = 2e-14 Identities = 69/76 (90%), Gaps = 1/76 (1%) Strand = Plus / Plus Query: 72 ggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcact 130 ||||||||||||||||| ||| || ||||||||||||||||| ||||||| |||||||| Sbjct: 113180 ggaacaaggttcaaatctctcggtctgttaggatgcctcagctacatacattactgcact 113239 Query: 131 tccacttgacacctat 146 |||||||| ||||||| Sbjct: 113240 tccacttggcacctat 113255 Score = 87.7 bits (44), Expect = 2e-14 Identities = 69/76 (90%), Gaps = 1/76 (1%) Strand = Plus / Minus Query: 72 ggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcact 130 ||||||||||||||||| ||| || ||||||||||||||||| ||||||| |||||||| Sbjct: 88940 ggaacaaggttcaaatctctcggtctgttaggatgcctcagctacatacattactgcact 88881 Query: 131 tccacttgacacctat 146 |||||||| ||||||| Sbjct: 88880 tccacttggcacctat 88865
>gb|AF426187.1| Riella helicophylla 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 674 Score = 87.7 bits (44), Expect = 2e-14 Identities = 69/76 (90%), Gaps = 1/76 (1%) Strand = Plus / Minus Query: 72 ggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcact 130 ||||||||||||||||| ||| || ||||||||||||||||| ||||||| |||||||| Sbjct: 118 ggaacaaggttcaaatctctcggtctgttaggatgcctcagctacatacattactgcact 59 Query: 131 tccacttgacacctat 146 |||||||| ||||||| Sbjct: 58 tccacttggcacctat 43
>gb|AF426183.1| Sphaerocarpos donnelli 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 777 Score = 87.7 bits (44), Expect = 2e-14 Identities = 69/76 (90%), Gaps = 1/76 (1%) Strand = Plus / Minus Query: 72 ggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcact 130 ||||||||||||||||| ||| || ||||||||||||||||| ||||||| |||||||| Sbjct: 228 ggaacaaggttcaaatctctcggtctgttaggatgcctcagctacatacattactgcact 169 Query: 131 tccacttgacacctat 146 |||||||| ||||||| Sbjct: 168 tccacttggcacctat 153
>gb|L41599.1|DCKCPITSA Dicksonia antarctica chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 564 Score = 87.7 bits (44), Expect = 2e-14 Identities = 90/104 (86%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 44 tgcctgatcgatttgatcaggccgtgtaggaacaaggttcaaatcgttcgttc-gttagg 102 ||||||||| ||||||||||| || |||||||| ||||||| | ||| || |||||| Sbjct: 275 tgcctgatcaatttgatcaggttctgcaggaacaaagttcaaacctctcggtctgttagg 216 Query: 103 atgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||||||||| ||||||| |||||||| ||||||| Sbjct: 215 atgcctcagctgcatacattactgcacctccacttggcacctat 172
>gb|AF033633.1|AF033633 Riccia fluitans 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 785 Score = 87.7 bits (44), Expect = 2e-14 Identities = 69/76 (90%), Gaps = 1/76 (1%) Strand = Plus / Minus Query: 72 ggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcact 130 ||||||||||||||||| ||| || ||||||||||||||||| ||||||| |||||||| Sbjct: 239 ggaacaaggttcaaatctctcggtctgttaggatgcctcagctacatacattactgcact 180 Query: 131 tccacttgacacctat 146 |||||||| ||||||| Sbjct: 179 tccacttggcacctat 164
>gb|AF393576.1| Anthoceros punctatus small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) and 5S ribosomal RNA (rrf) genes, complete sequence; and tRNA-Arg (trnR(acg)) gene, partial sequence; chloroplast genes for chloroplast products Length = 8235 Score = 85.7 bits (43), Expect = 6e-14 Identities = 107/127 (84%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 22 aacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaaggt 81 |||||||||||||| |||| ||||||| || | |||||| | ||||| |||||||| Sbjct: 7663 aacaatgaagataggtggctagtgccttataaaggcaatcaggtcatgtagaaacaaggt 7604 Query: 82 tcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttgac 140 ||||||| ||| || ||||| ||||||||||||||||||| |||||||||| ||||| | Sbjct: 7603 tcaaatctctcggtctgttagaatgcctcagctgcatacattactgcacttctacttggc 7544 Query: 141 acctatt 147 ||||||| Sbjct: 7543 acctatt 7537
>gb|AF338751.1| Lycopodium casuarinoides 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 799 Score = 85.7 bits (43), Expect = 6e-14 Identities = 108/127 (85%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||||||||| || | |||||||||| | | |||||| | ||||||||||||| Sbjct: 269 gaacaatgaagataggtg-ctagtgcctgataaaatcaatcaggtcatgtaggaacaagg 211 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| | | || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 210 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 151 Query: 140 cacctat 146 ||||||| Sbjct: 150 cacctat 144
>gb|AF338736.1| Phylloglossum drummondii 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 812 Score = 85.7 bits (43), Expect = 6e-14 Identities = 107/127 (84%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 21 gaacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaagg 80 ||||||||| ||||| || | |||||||||| | | |||||| ||||||||||| ||| Sbjct: 271 gaacaatgaggataggtgactagtgcctgataggatcaatcaggtcgtgtaggaacgagg 212 Query: 81 ttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttga 139 |||||||| | | || ||||||||||||||||||||||||| |||| | ||||||||| Sbjct: 211 ttcaaatctcttggtctgttaggatgcctcagctgcatacattactgtatttccacttgg 152 Query: 140 cacctat 146 ||||||| Sbjct: 151 cacctat 145
>gb|AF426180.1| Anthoceros punctatus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 819 Score = 85.7 bits (43), Expect = 6e-14 Identities = 107/127 (84%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 22 aacaatgaagatagatggcaagtgcctgatcgatttgatcaggccgtgtaggaacaaggt 81 |||||||||||||| |||| ||||||| || | |||||| | ||||| |||||||| Sbjct: 273 aacaatgaagataggtggctagtgccttataaaggcaatcaggtcatgtagaaacaaggt 214 Query: 82 tcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttccacttgac 140 ||||||| ||| || ||||| ||||||||||||||||||| |||||||||| ||||| | Sbjct: 213 tcaaatctctcggtctgttagaatgcctcagctgcatacattactgcacttctacttggc 154 Query: 141 acctatt 147 ||||||| Sbjct: 153 acctatt 147
>gb|L41554.1|TQRCPITSA Trichomanes radicans chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 559 Score = 85.7 bits (43), Expect = 6e-14 Identities = 68/75 (90%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 73 gaacaaggttcaaatcgttcgttcg-ttaggatgcctcagctgcatacatcactgcactt 131 |||||||||||||||| ||| || |||||||||||||||||||||||| ||||||||| Sbjct: 247 gaacaaggttcaaatctctcggtctattaggatgcctcagctgcatacattactgcactt 188 Query: 132 ccacttgacacctat 146 ||||||| ||||||| Sbjct: 187 ccacttggcacctat 173
>gb|AF338762.1| Isoetes echinospora 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 731 Score = 83.8 bits (42), Expect = 2e-13 Identities = 70/78 (89%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||| ||||||||||| ||| || ||||||||||||||||||||| ||| |||||| Sbjct: 219 taggaacgaggttcaaatctctcggtctgttaggatgcctcagctgcatgcattactgca 160 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 159 cttccacttggcacctat 142 Score = 42.1 bits (21), Expect = 0.82 Identities = 30/33 (90%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgat 51 ||||||||||| ||||| |||| |||||||||| Sbjct: 268 ttgaacaatgaggataggtggctagtgcctgat 236
>gb|AF338761.1| Isoetes lacustris 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 732 Score = 83.8 bits (42), Expect = 2e-13 Identities = 70/78 (89%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 70 taggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgca 128 ||||||| ||||||||||| ||| || ||||||||||||||||||||| ||| |||||| Sbjct: 219 taggaacgaggttcaaatctctcggtctgttaggatgcctcagctgcatgcattactgca 160 Query: 129 cttccacttgacacctat 146 |||||||||| ||||||| Sbjct: 159 cttccacttggcacctat 142 Score = 42.1 bits (21), Expect = 0.82 Identities = 30/33 (90%) Strand = Plus / Minus Query: 19 ttgaacaatgaagatagatggcaagtgcctgat 51 ||||||||||| ||||| |||| |||||||||| Sbjct: 268 ttgaacaatgaggataggtggctagtgcctgat 236
>gb|AF393612.1| Sphagnum rubellum large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3033 Score = 83.8 bits (42), Expect = 2e-13 Identities = 101/119 (84%), Gaps = 10/119 (8%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatt-------ta 149 ||||||||||||||||||||||||| |||||||||||||||| ||||||| || Sbjct: 3015 gttaggatgcctcagctgcatacattactgcacttccacttggcacctatcgtgatgata 2956 Query: 150 aacggctcgtctcgccgctaccttatcct--att-tccatacttctgtcgctccatccc 205 |||||||||||| |||| |||||||| | ||| || ||||||||||||||||||||| Sbjct: 2955 aacggctcgtcttgccgtgaccttatcttggattctcaatacttctgtcgctccatccc 2897
>gb|AF393587.1| Climacium dendroides large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3020 Score = 83.8 bits (42), Expect = 2e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct: 3002 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 2953
>gb|AF033637.1|AF033637 Andreaea rupestris 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 760 Score = 83.8 bits (42), Expect = 2e-13 Identities = 67/74 (90%), Gaps = 1/74 (1%) Strand = Plus / Minus Query: 74 aacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttc 132 ||||||||||||||| ||| || ||||||||||||||||||||| ||| |||||||||| Sbjct: 235 aacaaggttcaaatctctcggtctgttaggatgcctcagctgcatgcattactgcacttc 176 Query: 133 cacttgacacctat 146 |||||| ||||||| Sbjct: 175 cacttggcacctat 162
>gb|AF033635.1| Buxbaumia aphylla 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 703 Score = 83.8 bits (42), Expect = 2e-13 Identities = 67/74 (90%), Gaps = 1/74 (1%) Strand = Plus / Minus Query: 74 aacaaggttcaaatcgttcgttcg-ttaggatgcctcagctgcatacatcactgcacttc 132 ||||||||||||||| ||| || |||||||||||||||||||||||| |||||||||| Sbjct: 192 aacaaggttcaaatctctcggtctattaggatgcctcagctgcatacattactgcacttc 133 Query: 133 cacttgacacctat 146 |||||| ||||||| Sbjct: 132 cacttggcacctat 119
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 83.8 bits (42), Expect = 2e-13 Identities = 79/90 (87%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 59 atcaggccgtgtaggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcat 117 |||||| | ||||| ||||||||||||||| ||| || ||||| ||||||||||||||| Sbjct: 147514 atcaggtcatgtagaaacaaggttcaaatctctcggtctgttagaatgcctcagctgcat 147573 Query: 118 acatcactgcacttccacttgacacctatt 147 |||| |||||||||| ||||| |||||||| Sbjct: 147574 acattactgcacttctacttggcacctatt 147603 Score = 83.8 bits (42), Expect = 2e-13 Identities = 79/90 (87%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 59 atcaggccgtgtaggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcat 117 |||||| | ||||| ||||||||||||||| ||| || ||||| ||||||||||||||| Sbjct: 121152 atcaggtcatgtagaaacaaggttcaaatctctcggtctgttagaatgcctcagctgcat 121093 Query: 118 acatcactgcacttccacttgacacctatt 147 |||| |||||||||| ||||| |||||||| Sbjct: 121092 acattactgcacttctacttggcacctatt 121063
>emb|V00161.1|CHNT01 Tobacco chloroplast 4.5S ribosomal RNA Length = 103 Score = 83.8 bits (42), Expect = 2e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 85 gttaggatgcctcagtcgcatacatcactgcacttccacttgacacctat 36
>gb|M35056.1|MNICPRRKA M.rugicum 4.5S ribosomal RNA Length = 103 Score = 83.8 bits (42), Expect = 2e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct: 85 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 36
>gb|AF338760.1| Lycopodiella caroliniana 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 790 Score = 81.8 bits (41), Expect = 1e-12 Identities = 78/89 (87%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 59 atcaggccgtgtaggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcat 117 |||||| ||| ||||||||||||||||||| | | || ||||||||||||||||||||| Sbjct: 230 atcaggtcgtataggaacaaggttcaaatcccttggtctgttaggatgcctcagctgcat 171 Query: 118 acatcactgcacttccacttgacacctat 146 |||| |||| | ||||||||| ||||||| Sbjct: 170 acattactgtatttccacttggcacctat 142
>gb|AF338753.1| Lycopodium volubile 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 800 Score = 81.8 bits (41), Expect = 1e-12 Identities = 78/89 (87%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 59 atcaggccgtgtaggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcat 117 |||||| | ||||||||||||||||||||| | | || ||||||||||||||||||||| Sbjct: 230 atcaggtcatgtaggaacaaggttcaaatcccttggtctgttaggatgcctcagctgcat 171 Query: 118 acatcactgcacttccacttgacacctat 146 |||| |||| | ||||||||| ||||||| Sbjct: 170 acattactgtatttccacttggcacctat 142
>gb|L41569.1|PNUCPITSA Psilotum nudum chloroplast 4.5S rRNA-containing 23S-5S internal transcribed spacer in inverted repeat Length = 478 Score = 81.8 bits (41), Expect = 1e-12 Identities = 69/77 (89%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||| | ||| || ||||||||||||||||||| ||||| ||||||| Sbjct: 220 aggaacaaggttcaaagccatcggtctgttaggatgcctcagctgcgtacattactgcac 161 Query: 130 ttccacttgacacctat 146 ||||||||| ||||||| Sbjct: 160 ttccacttggcacctat 144
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 81.8 bits (41), Expect = 1e-12 Identities = 69/77 (89%), Gaps = 1/77 (1%) Strand = Plus / Plus Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||| | ||| || ||||||||||||||||||| ||||| ||||||| Sbjct: 125412 aggaacaaggttcaaagccatcggtctgttaggatgcctcagctgcgtacattactgcac 125471 Query: 130 ttccacttgacacctat 146 ||||||||| ||||||| Sbjct: 125472 ttccacttggcacctat 125488 Score = 81.8 bits (41), Expect = 1e-12 Identities = 69/77 (89%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 71 aggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcac 129 |||||||||||||||| | ||| || ||||||||||||||||||| ||||| ||||||| Sbjct: 98035 aggaacaaggttcaaagccatcggtctgttaggatgcctcagctgcgtacattactgcac 97976 Query: 130 ttccacttgacacctat 146 ||||||||| ||||||| Sbjct: 97975 ttccacttggcacctat 97959
>gb|AF426185.1| Preissia quadrata 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 780 Score = 79.8 bits (40), Expect = 4e-12 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand = Plus / Minus Query: 72 ggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcact 130 ||||||||||||||||| ||| || |||||||| |||||||| ||||||| |||||||| Sbjct: 228 ggaacaaggttcaaatctctcggtctgttaggatacctcagctacatacattactgcact 169 Query: 131 tccacttgacacctat 146 |||||||| ||||||| Sbjct: 168 tccacttggcacctat 153
>gb|AF426184.1| Conocephalum conicum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 776 Score = 79.8 bits (40), Expect = 4e-12 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand = Plus / Minus Query: 72 ggaacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcact 130 ||||||||||||||||| ||| || ||||||||| ||||||| ||||||| |||||||| Sbjct: 227 ggaacaaggttcaaatctctcggtctgttaggatgtctcagctacatacattactgcact 168 Query: 131 tccacttgacacctat 146 |||||||| ||||||| Sbjct: 167 tccacttggcacctat 152
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 79.8 bits (40), Expect = 4e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 79 ggttcaaatcgttcgttcgttaggatgcctcagctgcatacatc 122 |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 36587 ggttcaaatcgttcattcgttaggatgcctcagctgcatacatc 36544
>gb|L41595.1|YATCPITSA Cyathea cooperi chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 557 Score = 79.8 bits (40), Expect = 4e-12 Identities = 89/104 (85%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 44 tgcctgatcgatttgatcaggccgtgtaggaacaaggttcaaatcgttcgttc-gttagg 102 ||||||||| ||||||||||| || || ||||| ||||||| | ||| || |||||| Sbjct: 275 tgcctgatcaatttgatcaggttctgcagtaacaaagttcaaacctctcggtctgttagg 216 Query: 103 atgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||||||||| ||||||| |||||||| ||||||| Sbjct: 215 atgcctcagctgcatacattactgcacctccacttggcacctat 172
>gb|L41584.1|PIFCPITSA Pilularia globulifera chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 572 Score = 79.8 bits (40), Expect = 4e-12 Identities = 89/104 (85%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 44 tgcctgatcgatttgatcaggccgtgtaggaacaaggttcaaatcgttcgttc-gttagg 102 ||||||||| | ||||||||| || |||||||| ||||||| | ||| || |||||| Sbjct: 275 tgcctgatcaaattgatcaggttctgcaggaacaaagttcaaacctctcggtctgttagg 216 Query: 103 atgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||||||||| ||||||| |||||||| ||||||| Sbjct: 215 atgcctcagctgcatacattactgcacctccacttggcacctat 172
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 75.8 bits (38), Expect = 6e-11 Identities = 47/50 (94%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct: 146916 gttaggatgcctcagctgcatacattactgcacttccacttagcacctat 146867 Score = 75.8 bits (38), Expect = 6e-11 Identities = 47/50 (94%) Strand = Plus / Plus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct: 85935 gttaggatgcctcagctgcatacattactgcacttccacttagcacctat 85984
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 75.8 bits (38), Expect = 6e-11 Identities = 63/70 (90%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggct 156 ||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||| Sbjct: 112783 gttaggatgtctcagctgcatacattgctgtacttccacttgacaccta-ataaacggct 112841 Query: 157 cgtctcgccg 166 ||||| |||| Sbjct: 112842 cgtcttgccg 112851 Score = 75.8 bits (38), Expect = 6e-11 Identities = 63/70 (90%), Gaps = 1/70 (1%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggct 156 ||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||| Sbjct: 89205 gttaggatgtctcagctgcatacattgctgtacttccacttgacaccta-ataaacggct 89147 Query: 157 cgtctcgccg 166 ||||| |||| Sbjct: 89146 cgtcttgccg 89137
>gb|AF426186.1| Trichocolea tomentella 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 595 Score = 75.8 bits (38), Expect = 6e-11 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Minus Query: 74 aacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttc 132 ||||||||||||||| ||| || |||||||||||| |||| ||||||| |||||||||| Sbjct: 184 aacaaggttcaaatctctcggtctgttaggatgcctgagctacatacattactgcacttc 125 Query: 133 cacttgacacctat 146 |||||| ||||||| Sbjct: 124 cacttggcacctat 111
>gb|L41579.1|ADCCPITSA Adiantum capillus-veneris chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 563 Score = 75.8 bits (38), Expect = 6e-11 Identities = 47/50 (94%) Strand = Plus / Minus Query: 97 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 146 ||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct: 211 gttaggatgcctcagctgcatacattactgcacttccacttagcacctat 162
>gb|AF033628.1| Calypogeia integristipula 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 643 Score = 75.8 bits (38), Expect = 6e-11 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Minus Query: 74 aacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttc 132 ||||||||||||||| ||| || |||||||||||| |||| ||||||| |||||||||| Sbjct: 197 aacaaggttcaaatctctcggtctgttaggatgcctgagctacatacattactgcacttc 138 Query: 133 cacttgacacctat 146 |||||| ||||||| Sbjct: 137 cacttggcacctat 124
>gb|AF033627.1| Blepharostoma trichophyllum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 623 Score = 75.8 bits (38), Expect = 6e-11 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Minus Query: 74 aacaaggttcaaatcgttcgttc-gttaggatgcctcagctgcatacatcactgcacttc 132 ||||||||||||||| ||| || |||||||||||| |||| ||||||| |||||||||| Sbjct: 199 aacaaggttcaaatctctcggtctgttaggatgcctgagctacatacattactgcacttc 140 Query: 133 cacttgacacctat 146 |||||| ||||||| Sbjct: 139 cacttggcacctat 126 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,652,501 Number of Sequences: 3902068 Number of extensions: 1652501 Number of successful extensions: 37969 Number of sequences better than 10.0: 330 Number of HSP's better than 10.0 without gapping: 338 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 36562 Number of HSP's gapped (non-prelim): 1206 length of query: 251 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 229 effective length of database: 17,147,199,772 effective search space: 3926708747788 effective search space used: 3926708747788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
