ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet61e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC183681.2| Pan troglodytes BAC clone CH251-278I15 from chrom... 46 0.046
2gb|AC018924.9| Homo sapiens chromosome 15 clone RP11-355D13 map ... 46 0.046
3gb|AC019011.7| Homo sapiens chromosome 15 clone RP11-78I21 map 1... 46 0.046
4gb|AC158369.4| Pan troglodytes BAC clone CH251-554F11 from chrom... 46 0.046
5gb|AY904026.1| Homo sapiens tumor protein p53 binding protein, 1... 46 0.046
6gb|AC125105.3| Mus musculus BAC clone RP24-220B7 from chromosome... 42 0.72
7emb|CR391978.12| Zebrafish DNA sequence from clone DKEY-252L8 in... 42 0.72
8ref|XM_644184.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 42 0.72
9gb|AC156617.8| Mus musculus chromosome 7, clone RP23-311N3, comp... 42 0.72
10gb|AC011059.8| Homo sapiens chromosome 18, clone RP11-11F23, com... 42 0.72
11gb|AC129917.6| Homo sapiens chromosome 17, clone RP11-279B10, co... 42 0.72
12gb|AC090616.12| Homo sapiens chromosome 17, clone RP11-640N20, c... 42 0.72
13dbj|BS000047.1| Pan troglodytes chromosome 22 clone:PTB-109H19, ... 42 0.72
14dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 0.72
15emb|AL132993.2|HS31E23 Homo sapiens chromosome 21 Cosmid ICRFc10... 42 0.72
16emb|AL772292.10| Mouse DNA sequence from clone RP23-109C16 on ch... 42 0.72
17dbj|AP000431.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 42 0.72
18ref|NM_016371.2| Homo sapiens hydroxysteroid (17-beta) dehydroge... 40 2.8
19gb|AY170464.1| Takifugu rubripes C16orf8-like protein, hemoglobi... 40 2.8
20gb|BC065246.1| Homo sapiens hydroxysteroid (17-beta) dehydrogena... 40 2.8
21gb|AC182769.3| Cavia porcellus clone CH234-278G5, complete sequence 40 2.8
22gb|AC111085.11| Mus musculus chromosome 9, clone RP23-146C24, co... 40 2.8
23emb|CR339042.13| Zebrafish DNA sequence from clone CH211-268L18 ... 40 2.8
24emb|CR753817.13| Zebrafish DNA sequence from clone DKEY-195M11 i... 40 2.8
25gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, comple... 40 2.8
26gb|AY358962.1| Homo sapiens clone DNA108935 HSD17B7 (UNQ2563) mR... 40 2.8
27gb|BC071987.1| Homo sapiens hypothetical protein LOC158160, tran... 40 2.8
28emb|CR405715.16| Zebrafish DNA sequence from clone DKEY-47K20 in... 40 2.8
29ref|NM_001031744.1| Homo sapiens hypothetical protein LOC158160 ... 40 2.8
30emb|AL392003.11| Human DNA sequence from clone RP11-331H2 on chr... 40 2.8
31emb|AL355881.15| Human DNA sequence from clone RP11-332B14 on ch... 40 2.8
32gb|AF145023.1| Homo sapiens ovarian-specific protein mRNA, compl... 40 2.8
33emb|AL133216.10| Human DNA sequence from clone RP11-291L22 on ch... 40 2.8
34emb|AL050305.9|HSDA60B16 Human DNA sequence from clone RP6-60B16... 40 2.8
35emb|AL645750.9| Zebrafish DNA sequence from clone RP71-22E02 in ... 40 2.8
36emb|BX927163.31| Zebrafish DNA sequence from clone DKEY-126A1 in... 40 2.8
37gb|AC154097.13| Mus musculus chromosome 18, clone RP23-337F6, co... 40 2.8
38gb|AF485663.1| Pettancylus sp. EEAR-2002 16S ribosomal RNA gene,... 40 2.8
39emb|CR625699.1| full-length cDNA clone CS0DM014YB15 of Fetal liv... 40 2.8
40dbj|AK022929.1| Homo sapiens cDNA FLJ12867 fis, clone NT2RP20037... 40 2.8
41gb|AC092894.6| Homo sapiens 3 BAC RP11-231E6 (Roswell Park Cance... 40 2.8
42gb|AC091163.5| Homo sapiens chromosome 8, clone RP11-350F16, com... 40 2.8
43gb|AY641455.1| Burkholderia glumae DNA binding protein (toxJ), p... 40 2.8
44gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, c... 40 2.8
45dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 2.8
46gb|AC009028.3|AC009028 Homo sapiens chromosome 16 clone RP11-131... 40 2.8
47dbj|AB040403.3| Burkholderia glumae toxoflavin biosynthesis-rela... 40 2.8
48dbj|AB016888.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 2.8
49gb|AF098786.2|AF098786 Homo sapiens 17 beta-hydroxysteroid dehyd... 40 2.8
50emb|AJ249179.1|HSA249179 Homo sapiens mRNA for 17beta-hydroxyste... 40 2.8
51gb|AF162767.1|HSHSD17B9 Homo sapiens 17beta-hydroxysteroid dehyd... 40 2.8
52gb|AC140272.3| Mus musculus BAC clone RP23-332G6 from 8, complet... 40 2.8
53emb|AL845282.12| Zebrafish DNA sequence from clone DKEY-28P18 in... 40 2.8
54dbj|AB113651.1| Tomato leaf curl virus satellite DNA, complete g... 40 2.8
55emb|AJ250558.1|HSA250558 Homo sapiens partial HSD17B7 gene for 1... 40 2.8
56dbj|AP003503.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 2.8
57emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chro... 40 2.8
58gb|AC125793.2| Homo sapiens chromosome 16 clone CTD-3253I12, com... 40 2.8 
>gb|AC183681.2| Pan troglodytes BAC clone CH251-278I15 from chromosome unknown,
             complete sequence
          Length = 185618

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 8     tacttatttttatttctttttgt 30
             |||||||||||||||||||||||
Sbjct: 85719 tacttatttttatttctttttgt 85697
to top
>gb|AC018924.9| Homo sapiens chromosome 15 clone RP11-355D13 map 15q15, complete sequence
          Length = 182764

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 8      tacttatttttatttctttttgt 30
              |||||||||||||||||||||||
Sbjct: 112041 tacttatttttatttctttttgt 112019
to top
>gb|AC019011.7| Homo sapiens chromosome 15 clone RP11-78I21 map 15q15, complete
             sequence
          Length = 160456

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 8     tacttatttttatttctttttgt 30
             |||||||||||||||||||||||
Sbjct: 30229 tacttatttttatttctttttgt 30207
to top
>gb|AC158369.4| Pan troglodytes BAC clone CH251-554F11 from chromosome unknown, complete
              sequence
          Length = 201901

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 8      tacttatttttatttctttttgt 30
              |||||||||||||||||||||||
Sbjct: 186797 tacttatttttatttctttttgt 186775
to top
>gb|AY904026.1| Homo sapiens tumor protein p53 binding protein, 1 (TP53BP1) gene,
             complete cds
          Length = 107256

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 8     tacttatttttatttctttttgt 30
             |||||||||||||||||||||||
Sbjct: 70796 tacttatttttatttctttttgt 70818
to top
>gb|AC125105.3| Mus musculus BAC clone RP24-220B7 from chromosome 16, complete sequence
          Length = 153616

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     gaaagcctacttatttttatt 21
             |||||||||||||||||||||
Sbjct: 96946 gaaagcctacttatttttatt 96966
to top
>emb|CR391978.12| Zebrafish DNA sequence from clone DKEY-252L8 in linkage group 1,
             complete sequence
          Length = 137171

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 8     tacttatttttatttcttttt 28
             |||||||||||||||||||||
Sbjct: 74264 tacttatttttatttcttttt 74284
to top
>ref|XM_644184.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (324.t00001)
           partial mRNA
          Length = 5019

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 8   tacttatttttatttcttttt 28
           |||||||||||||||||||||
Sbjct: 127 tacttatttttatttcttttt 107
to top
>gb|AC156617.8| Mus musculus chromosome 7, clone RP23-311N3, complete sequence
          Length = 203647

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      gaaagcctacttatttttatt 21
              |||||||||||||||||||||
Sbjct: 106356 gaaagcctacttatttttatt 106376
to top
>gb|AC011059.8| Homo sapiens chromosome 18, clone RP11-11F23, complete sequence
          Length = 143799

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     tacttatttttatttcttttt 28
             |||||||||||||||||||||
Sbjct: 89624 tacttatttttatttcttttt 89604
to top
>gb|AC129917.6| Homo sapiens chromosome 17, clone RP11-279B10, complete sequence
          Length = 118759

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 8     tacttatttttatttcttttt 28
             |||||||||||||||||||||
Sbjct: 56558 tacttatttttatttcttttt 56578
to top
>gb|AC090616.12| Homo sapiens chromosome 17, clone RP11-640N20, complete sequence
          Length = 192070

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 8     tacttatttttatttcttttt 28
             |||||||||||||||||||||
Sbjct: 13972 tacttatttttatttcttttt 13992
to top
>dbj|BS000047.1| Pan troglodytes chromosome 22 clone:PTB-109H19, map 22, complete
              sequences
          Length = 214118

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 41     gagaatacttatttacttgat 61
              |||||||||||||||||||||
Sbjct: 166678 gagaatacttatttacttgat 166658
to top
>dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, section 18/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 41     gagaatacttatttacttgat 61
              |||||||||||||||||||||
Sbjct: 326074 gagaatacttatttacttgat 326054
to top
>emb|AL132993.2|HS31E23 Homo sapiens chromosome 21 Cosmid ICRFc103E2331, complete sequence
          Length = 36626

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    gagaatacttatttacttgat 61
             |||||||||||||||||||||
Sbjct: 14326 gagaatacttatttacttgat 14306
to top
>emb|AL772292.10| Mouse DNA sequence from clone RP23-109C16 on chromosome 2, complete
              sequence
          Length = 201671

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     cttatttttatttctttttgt 30
              |||||||||||||||||||||
Sbjct: 107351 cttatttttatttctttttgt 107371
to top
>dbj|AP000431.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B28M9,
             LL56-APP region, complete sequence
          Length = 152487

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    gagaatacttatttacttgat 61
             |||||||||||||||||||||
Sbjct: 26441 gagaatacttatttacttgat 26421
to top
>ref|NM_016371.2| Homo sapiens hydroxysteroid (17-beta) dehydrogenase 7 (HSD17B7), mRNA
          Length = 1533

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ttatttttatttctttttgt 30
            ||||||||||||||||||||
Sbjct: 1230 ttatttttatttctttttgt 1211
to top
>gb|AY170464.1| Takifugu rubripes C16orf8-like protein, hemoglobin alpha 3 subunit
             (HBA3), hemoglobin beta subunit (HBB), hemoglobin alpha 4
             subunit (HBA4), and leucine carboxyl methyltransferase
             (LCMT) genes, complete cds
          Length = 35210

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tacttatttttatttctttt 27
             ||||||||||||||||||||
Sbjct: 22726 tacttatttttatttctttt 22745
to top
>gb|BC065246.1| Homo sapiens hydroxysteroid (17-beta) dehydrogenase 7, mRNA (cDNA
            clone MGC:75018 IMAGE:6062803), complete cds
          Length = 1508

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ttatttttatttctttttgt 30
            ||||||||||||||||||||
Sbjct: 1205 ttatttttatttctttttgt 1186
to top
>gb|AC182769.3| Cavia porcellus clone CH234-278G5, complete sequence
          Length = 118835

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     acttatttttatttcttttt 28
             ||||||||||||||||||||
Sbjct: 76678 acttatttttatttcttttt 76697
to top
>gb|AC111085.11| Mus musculus chromosome 9, clone RP23-146C24, complete sequence
          Length = 220622

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     acttatttttatttcttttt 28
             ||||||||||||||||||||
Sbjct: 91817 acttatttttatttcttttt 91836
to top
>emb|CR339042.13| Zebrafish DNA sequence from clone CH211-268L18 in linkage group 21,
             complete sequence
          Length = 176058

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ttatttttatttctttttgt 30
             ||||||||||||||||||||
Sbjct: 30318 ttatttttatttctttttgt 30337
to top
>emb|CR753817.13| Zebrafish DNA sequence from clone DKEY-195M11 in linkage group 6,
             complete sequence
          Length = 236737

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ttatttttatttctttttgt 30
             ||||||||||||||||||||
Sbjct: 84415 ttatttttatttctttttgt 84434
to top
>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence
          Length = 200908

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      tacttatttttatttctttt 27
              ||||||||||||||||||||
Sbjct: 103781 tacttatttttatttctttt 103762
to top
>gb|AY358962.1| Homo sapiens clone DNA108935 HSD17B7 (UNQ2563) mRNA, complete cds
          Length = 1432

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ttatttttatttctttttgt 30
            ||||||||||||||||||||
Sbjct: 1142 ttatttttatttctttttgt 1123
to top
>gb|BC071987.1| Homo sapiens hypothetical protein LOC158160, transcript variant 1,
            mRNA (cDNA clone MGC:88684 IMAGE:4634372), complete cds
          Length = 1418

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ttatttttatttctttttgt 30
            ||||||||||||||||||||
Sbjct: 1112 ttatttttatttctttttgt 1093
to top
>emb|CR405715.16| Zebrafish DNA sequence from clone DKEY-47K20 in linkage group 18,
              complete sequence
          Length = 170849

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      tacttatttttatttctttt 27
              ||||||||||||||||||||
Sbjct: 133670 tacttatttttatttctttt 133689
to top
>ref|NM_001031744.1| Homo sapiens hypothetical protein LOC158160 (LOC158160), transcript
            variant 1, mRNA
          Length = 1418

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ttatttttatttctttttgt 30
            ||||||||||||||||||||
Sbjct: 1112 ttatttttatttctttttgt 1093
to top
>emb|AL392003.11| Human DNA sequence from clone RP11-331H2 on chromosome 1 Containt the 3'
              end of the HSD17B7 gene for hydroxysteroid (17-beta)
              dehydrogenase 7, a novel protein (MGC48998) and a
              cytochrome c oxidase subunit VIIb (COX7B) pseudogene,
              complete sequence
          Length = 191872

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     ttatttttatttctttttgt 30
              ||||||||||||||||||||
Sbjct: 176722 ttatttttatttctttttgt 176741
to top
>emb|AL355881.15| Human DNA sequence from clone RP11-332B14 on chromosome 6 Contains
            part of the SGK gene for serum/glucocorticoid regulated
            kinase and a keratin 8 (KRT8) pseudogene, complete
            sequence
          Length = 42304

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 11   ttatttttatttctttttgt 30
            ||||||||||||||||||||
Sbjct: 6411 ttatttttatttctttttgt 6430
to top
>gb|AF145023.1| Homo sapiens ovarian-specific protein mRNA, complete cds
          Length = 1537

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ttatttttatttctttttgt 30
            ||||||||||||||||||||
Sbjct: 1230 ttatttttatttctttttgt 1211
to top
>emb|AL133216.10| Human DNA sequence from clone RP11-291L22 on chromosome 10 Contains the
             3' end of a gene for a novel protein similar to
             17-beta-hydroxysteroid dehydrogenase type 7 (HSD17B7), the
             gene for a novel protein similar to CDC10 cell division
             cycle 10, homolog (S. cerevisiae) (CDC10), a novel gene, a
             novel gene containing FLJ14186, a capicua homolog
             (Drosophila) (CIC) pseudogene and a CpG island, complete
             sequence
          Length = 166835

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    ttatttttatttctttttgt 30
             ||||||||||||||||||||
Sbjct: 15144 ttatttttatttctttttgt 15125
to top
>emb|AL050305.9|HSDA60B16 Human DNA sequence from clone RP6-60B16 on chromosome Xp11.21-22.2
              Contains the 5' end of one variant of the DMD gene for
              dystrophin (muscular dystrophy, Duchenne and Becker types),
              and a lysosomal-associated membrane protein 1 (LAMP1)
              pseudogene, complete sequence
          Length = 139258

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      cctacttatttttatttctt 25
              ||||||||||||||||||||
Sbjct: 102460 cctacttatttttatttctt 102441
to top
>emb|AL645750.9| Zebrafish DNA sequence from clone RP71-22E02 in linkage group 4
             Contains part of a novel gene similar to human CELSR1 (EGF
             LAG seven-pass G-type receptor 1 cadherin) and two CpG
             islands, complete sequence
          Length = 151797

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     ctacttatttttatttcttt 26
             ||||||||||||||||||||
Sbjct: 86879 ctacttatttttatttcttt 86860
to top
>emb|BX927163.31| Zebrafish DNA sequence from clone DKEY-126A1 in linkage group 22,
             complete sequence
          Length = 157294

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    atttttatttctttttgtgg 32
             ||||||||||||||||||||
Sbjct: 12680 atttttatttctttttgtgg 12699
to top
>gb|AC154097.13| Mus musculus chromosome 18, clone RP23-337F6, complete sequence
          Length = 216640

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      acttatttttatttcttttt 28
              ||||||||||||||||||||
Sbjct: 163028 acttatttttatttcttttt 163047
to top
>gb|AF485663.1| Pettancylus sp. EEAR-2002 16S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 429

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 11  ttatttttatttctttttgt 30
           ||||||||||||||||||||
Sbjct: 234 ttatttttatttctttttgt 253
to top
>emb|CR625699.1| full-length cDNA clone CS0DM014YB15 of Fetal liver of Homo sapiens
            (human)
          Length = 1433

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ttatttttatttctttttgt 30
            ||||||||||||||||||||
Sbjct: 1176 ttatttttatttctttttgt 1157
to top
>dbj|AK022929.1| Homo sapiens cDNA FLJ12867 fis, clone NT2RP2003702, highly similar to
            Homo sapiens 17 beta-hydroxysteroid dehydrogenase type
            VII (HSD17B7) mRNA
          Length = 2541

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ttatttttatttctttttgt 30
            ||||||||||||||||||||
Sbjct: 2253 ttatttttatttctttttgt 2234
to top
>gb|AC092894.6| Homo sapiens 3 BAC RP11-231E6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 127852

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    ttatttttatttctttttgt 30
             ||||||||||||||||||||
Sbjct: 47372 ttatttttatttctttttgt 47353
to top
>gb|AC091163.5| Homo sapiens chromosome 8, clone RP11-350F16, complete sequence
          Length = 165605

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    atttttatttctttttgtgg 32
             ||||||||||||||||||||
Sbjct: 87177 atttttatttctttttgtgg 87158
to top
>gb|AY641455.1| Burkholderia glumae DNA binding protein (toxJ), putative transposase,
             putative outer membrane protein OprM precursor (toxI),
             probable RND efflux transporter (toxH), probable RND
             efflux membrane-fusion protein precursor (toxG),
             hypothetical protein (toxF), LysR type regulatory protein
             (toxR), putative ubiquinone/menaquinone biosynthesis
             methyltransferase (toxA), putative GTP cyclohydrolase II
             (toxB), WD repeat portein (toxC), hypothetical protein
             (toxD), putative deaminase (toxE), and putative
             transposase genes, complete cds
          Length = 16987

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   gcggcagcacgcagttgccg 197
             ||||||||||||||||||||
Sbjct: 12490 gcggcagcacgcagttgccg 12509
to top
>gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, complete sequence
          Length = 184139

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    ttatttttatttctttttgt 30
             ||||||||||||||||||||
Sbjct: 87231 ttatttttatttctttttgt 87212
to top
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 10      cttatttttatttctttttgtggg 33
               ||||||||||||||||||| ||||
Sbjct: 2263955 cttatttttatttctttttttggg 2263932
to top
>gb|AC009028.3|AC009028 Homo sapiens chromosome 16 clone RP11-131F3, complete sequence
          Length = 166271

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      acttatttttatttcttttt 28
              ||||||||||||||||||||
Sbjct: 152216 acttatttttatttcttttt 152235
to top
>dbj|AB040403.3| Burkholderia glumae toxoflavin biosynthesis-related gene cluster
            (toxR, toxA, toxB, toxC, toxD, toxE), complete cds
          Length = 8241

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 178  gcggcagcacgcagttgccg 197
            ||||||||||||||||||||
Sbjct: 3893 gcggcagcacgcagttgccg 3912
to top
>dbj|AB016888.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDH9
          Length = 85791

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    ttatttttatttctttttgt 30
             ||||||||||||||||||||
Sbjct: 42738 ttatttttatttctttttgt 42719
to top
>gb|AF098786.2|AF098786 Homo sapiens 17 beta-hydroxysteroid dehydrogenase type VII (HSD17B7)
            mRNA, complete cds
          Length = 1453

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ttatttttatttctttttgt 30
            ||||||||||||||||||||
Sbjct: 1146 ttatttttatttctttttgt 1127
to top
>emb|AJ249179.1|HSA249179 Homo sapiens mRNA for 17beta-hydroxysteroid dehydrogenase type 7
          Length = 1447

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ttatttttatttctttttgt 30
            ||||||||||||||||||||
Sbjct: 1159 ttatttttatttctttttgt 1140
to top
>gb|AF162767.1|HSHSD17B9 Homo sapiens 17beta-hydroxysteroid dehydrogenase type 7 (HSD17B7)
           gene, exon 9 and complete cds
          Length = 1082

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 11  ttatttttatttctttttgt 30
           ||||||||||||||||||||
Sbjct: 794 ttatttttatttctttttgt 775
to top
>gb|AC140272.3| Mus musculus BAC clone RP23-332G6 from 8, complete sequence
          Length = 228667

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     ctacttatttttatttctttttgt 30
             |||||||||||||||| |||||||
Sbjct: 67129 ctacttatttttatttatttttgt 67106
to top
>emb|AL845282.12| Zebrafish DNA sequence from clone DKEY-28P18 in linkage group 21,
              complete sequence
          Length = 192865

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     ttatttttatttctttttgt 30
              ||||||||||||||||||||
Sbjct: 171317 ttatttttatttctttttgt 171336
to top
>dbj|AB113651.1| Tomato leaf curl virus satellite DNA, complete genome
          Length = 1354

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 11  ttatttttatttctttttgt 30
           ||||||||||||||||||||
Sbjct: 945 ttatttttatttctttttgt 926
to top
>emb|AJ250558.1|HSA250558 Homo sapiens partial HSD17B7 gene for 17beta hydroxysteroid
           dehydrogenase type 7, exon 9
          Length = 735

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 11  ttatttttatttctttttgt 30
           ||||||||||||||||||||
Sbjct: 319 ttatttttatttctttttgt 300
to top
>dbj|AP003503.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-86D13, complete
             sequence
          Length = 175454

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tacttatttttatttctttt 27
             ||||||||||||||||||||
Sbjct: 32050 tacttatttttatttctttt 32069
to top
>emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chromosome 2, complete
              sequence
          Length = 206168

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     ttatttttatttctttttgt 30
              ||||||||||||||||||||
Sbjct: 145056 ttatttttatttctttttgt 145075
to top
>gb|AC125793.2| Homo sapiens chromosome 16 clone CTD-3253I12, complete sequence
          Length = 117647

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     acttatttttatttcttttt 28
             ||||||||||||||||||||
Sbjct: 54977 acttatttttatttcttttt 54996


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,384,715
Number of Sequences: 3902068
Number of extensions: 2384715
Number of successful extensions: 246849
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 246655
Number of HSP's gapped (non-prelim): 194
length of query: 223
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 201
effective length of database: 17,147,199,772
effective search space: 3446587154172
effective search space used: 3446587154172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top