| Clone Name | rbaet61c11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY710429.1| Cryptococcus gattii strain E566 MATa locus, complete sequence Length = 144400 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 gaaccgtttacagaaaatggt 141 ||||||||||||||||||||| Sbjct: 32590 gaaccgtttacagaaaatggt 32570
>gb|AC068064.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-199I14, complete sequence Length = 152776 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 gttcagtatgtctgtaaacag 162 ||||||||||||||||||||| Sbjct: 119884 gttcagtatgtctgtaaacag 119864
>emb|BX957324.10| Zebrafish DNA sequence from clone DKEY-280F7 in linkage group 7, complete sequence Length = 166342 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 acaaccaaagcaggcaaaaca 99 ||||||||||||||||||||| Sbjct: 147044 acaaccaaagcaggcaaaaca 147024
>emb|BX470191.8| Zebrafish DNA sequence from clone CH211-89N7 in linkage group 7, complete sequence Length = 181294 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 acaaccaaagcaggcaaaaca 99 ||||||||||||||||||||| Sbjct: 104101 acaaccaaagcaggcaaaaca 104121
>emb|AL935285.6| Zebrafish DNA sequence from clone DKEY-37A1, complete sequence Length = 230323 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 acaaccaaagcaggcaaaaca 99 ||||||||||||||||||||| Sbjct: 42401 acaaccaaagcaggcaaaaca 42421
>ref|XM_789382.1| PREDICTED: Strongylocentrotus purpuratus similar to E3 ubiquitin protein ligase, HECT domain containing, 1 (LOC589748), mRNA Length = 9110 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tagctttaggtcacaaccaa 86 |||||||||||||||||||| Sbjct: 5903 tagctttaggtcacaaccaa 5922
>gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, complete sequence Length = 178917 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 cacaaccaaagcaggcaaaacatt 101 ||||| |||||||||||||||||| Sbjct: 33047 cacaagcaaagcaggcaaaacatt 33024
>gb|AC154236.2| Mus musculus BAC clone RP24-160E14 from chromosome 17, complete sequence Length = 162390 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 aatggtgttcagtatgtct 154 ||||||||||||||||||| Sbjct: 58650 aatggtgttcagtatgtct 58668
>gb|AC148920.1| Mus musculus BAC clone RP23-273O10 from chromosome 19, complete sequence Length = 224526 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 130 acagaaaatggtgttcagtatgt 152 |||| |||||||||||||||||| Sbjct: 5584 acaggaaatggtgttcagtatgt 5562
>gb|AC109262.13| Mus musculus chromosome 1, clone RP23-31H15, complete sequence Length = 241579 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 cactgaacagatgaaaata 35 ||||||||||||||||||| Sbjct: 98538 cactgaacagatgaaaata 98520
>emb|CT025223.2| Xenopus tropicalis finished cDNA, clone TEgg088d21 Length = 760 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 agaaaatggtgttcagtat 150 ||||||||||||||||||| Sbjct: 580 agaaaatggtgttcagtat 598
>gb|AC004131.1|HUAC004131 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-69G12, complete sequence Length = 77713 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 134 aaaatggtgttcagtatgt 152 ||||||||||||||||||| Sbjct: 2830 aaaatggtgttcagtatgt 2812
>gb|AC016877.11| Homo sapiens chromosome 8, clone RP11-44N12, complete sequence Length = 188593 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 gaacagatgaaaatacttt 39 ||||||||||||||||||| Sbjct: 176156 gaacagatgaaaatacttt 176138
>gb|AC122039.4| Mus musculus BAC clone RP24-432H3 from chromosome 6, complete sequence Length = 169274 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 actgaacagatgaaaatac 36 ||||||||||||||||||| Sbjct: 83319 actgaacagatgaaaatac 83301
>gb|AC161456.3| Mus musculus BAC clone RP23-190H11 from chromosome 6, complete sequence Length = 208350 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 actgaacagatgaaaatac 36 ||||||||||||||||||| Sbjct: 45428 actgaacagatgaaaatac 45446
>gb|AC119567.11| Homo sapiens X BAC RP11-416J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 79556 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 acttcactgaacagatgaa 31 ||||||||||||||||||| Sbjct: 31936 acttcactgaacagatgaa 31954
>gb|AC104986.5| Homo sapiens chromosome 8, clone RP11-410L14, complete sequence Length = 153411 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 gaacagatgaaaatacttt 39 ||||||||||||||||||| Sbjct: 53057 gaacagatgaaaatacttt 53075
>gb|AC183297.3| Pan troglodytes BAC clone CH251-300E12 from chromosome 18, complete sequence Length = 173095 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 145 cagtatgtctgtaaacaga 163 ||||||||||||||||||| Sbjct: 153033 cagtatgtctgtaaacaga 153051
>gb|AC153014.4| Mus musculus BAC clone RP23-203I6 from chromosome 19, complete sequence Length = 195382 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 130 acagaaaatggtgttcagtatgt 152 |||| |||||||||||||||||| Sbjct: 47575 acaggaaatggtgttcagtatgt 47553
>gb|AC155949.8| Mus musculus 6 BAC RP24-407P20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179931 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 aaaacttcactgaacagat 28 ||||||||||||||||||| Sbjct: 87696 aaaacttcactgaacagat 87678
>gb|AC139452.4| Homo sapiens 3 BAC RP11-301L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164897 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 ttcactgaacagatgaaaa 33 ||||||||||||||||||| Sbjct: 45268 ttcactgaacagatgaaaa 45250
>gb|AC027130.5|AC027130 Homo sapiens chromosome 16 clone CTD-2380F24, complete sequence Length = 134640 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 134 aaaatggtgttcagtatgt 152 ||||||||||||||||||| Sbjct: 91550 aaaatggtgttcagtatgt 91532
>gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, complete sequence Length = 171048 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 aaaatggtgttcagtatgt 152 ||||||||||||||||||| Sbjct: 110049 aaaatggtgttcagtatgt 110067
>emb|AL954678.8| Zebrafish DNA sequence from clone CH211-207E14 in linkage group 9, complete sequence Length = 219500 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 acagaaaatggtgttcagt 148 ||||||||||||||||||| Sbjct: 119255 acagaaaatggtgttcagt 119237
>dbj|AP003062.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-555G19, complete sequence Length = 171428 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 acagatgaaaatactttag 41 ||||||||||||||||||| Sbjct: 87708 acagatgaaaatactttag 87690
>gb|AC107648.11| Mus musculus chromosome 19, clone RP23-126M4, complete sequence Length = 210931 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 130 acagaaaatggtgttcagtatgt 152 |||| |||||||||||||||||| Sbjct: 47568 acaggaaatggtgttcagtatgt 47546
>gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, complete sequence Length = 155483 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 gcaggcaaaacattctcag 106 ||||||||||||||||||| Sbjct: 69068 gcaggcaaaacattctcag 69086
>gb|BC084841.1| Xenopus laevis hypothetical LOC495375, mRNA (cDNA clone MGC:85415 IMAGE:6933368), complete cds Length = 812 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 agaaaatggtgttcagtat 150 ||||||||||||||||||| Sbjct: 684 agaaaatggtgttcagtat 702
>dbj|AP005121.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-527H14, complete sequence Length = 155150 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 acagatgaaaatactttag 41 ||||||||||||||||||| Sbjct: 95986 acagatgaaaatactttag 96004
>emb|AL359312.18| Human DNA sequence from clone RP11-216E19 on chromosome 18, complete sequence Length = 143463 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 acagatgaaaatactttag 41 ||||||||||||||||||| Sbjct: 120824 acagatgaaaatactttag 120842
>emb|AL513351.26| Mouse DNA sequence from clone RP23-122P5 on chromosome 1, complete sequence Length = 224628 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 cactgaacagatgaaaata 35 ||||||||||||||||||| Sbjct: 3401 cactgaacagatgaaaata 3419
>dbj|AP004294.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1651H12 Length = 180236 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 gaacagatgaaaatacttt 39 ||||||||||||||||||| Sbjct: 17812 gaacagatgaaaatacttt 17794 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,745,215 Number of Sequences: 3902068 Number of extensions: 1745215 Number of successful extensions: 117703 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117627 Number of HSP's gapped (non-prelim): 76 length of query: 171 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 149 effective length of database: 17,147,199,772 effective search space: 2554932766028 effective search space used: 2554932766028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)