ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet61c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY710429.1| Cryptococcus gattii strain E566 MATa locus, compl... 42 0.53
2gb|AC068064.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 0.53
3emb|BX957324.10| Zebrafish DNA sequence from clone DKEY-280F7 in... 42 0.53
4emb|BX470191.8| Zebrafish DNA sequence from clone CH211-89N7 in ... 42 0.53
5emb|AL935285.6| Zebrafish DNA sequence from clone DKEY-37A1, com... 42 0.53
6ref|XM_789382.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 2.1
7gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, comple... 40 2.1
8gb|AC154236.2| Mus musculus BAC clone RP24-160E14 from chromosom... 38 8.3
9gb|AC148920.1| Mus musculus BAC clone RP23-273O10 from chromosom... 38 8.3
10gb|AC109262.13| Mus musculus chromosome 1, clone RP23-31H15, com... 38 8.3
11emb|CT025223.2| Xenopus tropicalis finished cDNA, clone TEgg088d21 38 8.3
12gb|AC004131.1|HUAC004131 Homo sapiens Chromosome 16 BAC clone CI... 38 8.3
13gb|AC016877.11| Homo sapiens chromosome 8, clone RP11-44N12, com... 38 8.3
14gb|AC122039.4| Mus musculus BAC clone RP24-432H3 from chromosome... 38 8.3
15gb|AC161456.3| Mus musculus BAC clone RP23-190H11 from chromosom... 38 8.3
16gb|AC119567.11| Homo sapiens X BAC RP11-416J16 (Roswell Park Can... 38 8.3
17gb|AC104986.5| Homo sapiens chromosome 8, clone RP11-410L14, com... 38 8.3
18gb|AC183297.3| Pan troglodytes BAC clone CH251-300E12 from chrom... 38 8.3
19gb|AC153014.4| Mus musculus BAC clone RP23-203I6 from chromosome... 38 8.3
20gb|AC155949.8| Mus musculus 6 BAC RP24-407P20 (Roswell Park Canc... 38 8.3
21gb|AC139452.4| Homo sapiens 3 BAC RP11-301L7 (Roswell Park Cance... 38 8.3
22gb|AC027130.5|AC027130 Homo sapiens chromosome 16 clone CTD-2380... 38 8.3
23gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, comp... 38 8.3
24emb|AL954678.8| Zebrafish DNA sequence from clone CH211-207E14 i... 38 8.3
25dbj|AP003062.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 8.3
26gb|AC107648.11| Mus musculus chromosome 19, clone RP23-126M4, co... 38 8.3
27gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, compl... 38 8.3
28gb|BC084841.1| Xenopus laevis hypothetical LOC495375, mRNA (cDNA... 38 8.3
29dbj|AP005121.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 38 8.3
30emb|AL359312.18| Human DNA sequence from clone RP11-216E19 on ch... 38 8.3
31emb|AL513351.26| Mouse DNA sequence from clone RP23-122P5 on chr... 38 8.3
32dbj|AP004294.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 8.3

>gb|AY710429.1| Cryptococcus gattii strain E566 MATa locus, complete sequence
          Length = 144400

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   gaaccgtttacagaaaatggt 141
             |||||||||||||||||||||
Sbjct: 32590 gaaccgtttacagaaaatggt 32570



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>gb|AC068064.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-199I14, complete
              sequence
          Length = 152776

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 142    gttcagtatgtctgtaaacag 162
              |||||||||||||||||||||
Sbjct: 119884 gttcagtatgtctgtaaacag 119864



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>emb|BX957324.10| Zebrafish DNA sequence from clone DKEY-280F7 in linkage group 7, complete
              sequence
          Length = 166342

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 79     acaaccaaagcaggcaaaaca 99
              |||||||||||||||||||||
Sbjct: 147044 acaaccaaagcaggcaaaaca 147024



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>emb|BX470191.8| Zebrafish DNA sequence from clone CH211-89N7 in linkage group 7, complete
              sequence
          Length = 181294

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     acaaccaaagcaggcaaaaca 99
              |||||||||||||||||||||
Sbjct: 104101 acaaccaaagcaggcaaaaca 104121



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>emb|AL935285.6| Zebrafish DNA sequence from clone DKEY-37A1, complete sequence
          Length = 230323

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    acaaccaaagcaggcaaaaca 99
             |||||||||||||||||||||
Sbjct: 42401 acaaccaaagcaggcaaaaca 42421



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>ref|XM_789382.1| PREDICTED: Strongylocentrotus purpuratus similar to E3 ubiquitin
            protein ligase, HECT domain containing, 1 (LOC589748),
            mRNA
          Length = 9110

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   tagctttaggtcacaaccaa 86
            ||||||||||||||||||||
Sbjct: 5903 tagctttaggtcacaaccaa 5922



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>gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, complete sequence
          Length = 178917

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    cacaaccaaagcaggcaaaacatt 101
             ||||| ||||||||||||||||||
Sbjct: 33047 cacaagcaaagcaggcaaaacatt 33024



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>gb|AC154236.2| Mus musculus BAC clone RP24-160E14 from chromosome 17, complete
             sequence
          Length = 162390

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 136   aatggtgttcagtatgtct 154
             |||||||||||||||||||
Sbjct: 58650 aatggtgttcagtatgtct 58668



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>gb|AC148920.1| Mus musculus BAC clone RP23-273O10 from chromosome 19, complete
            sequence
          Length = 224526

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 130  acagaaaatggtgttcagtatgt 152
            |||| ||||||||||||||||||
Sbjct: 5584 acaggaaatggtgttcagtatgt 5562



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>gb|AC109262.13| Mus musculus chromosome 1, clone RP23-31H15, complete sequence
          Length = 241579

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 17    cactgaacagatgaaaata 35
             |||||||||||||||||||
Sbjct: 98538 cactgaacagatgaaaata 98520



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>emb|CT025223.2| Xenopus tropicalis finished cDNA, clone TEgg088d21
          Length = 760

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 132 agaaaatggtgttcagtat 150
           |||||||||||||||||||
Sbjct: 580 agaaaatggtgttcagtat 598



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>gb|AC004131.1|HUAC004131 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-69G12, complete
            sequence
          Length = 77713

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 134  aaaatggtgttcagtatgt 152
            |||||||||||||||||||
Sbjct: 2830 aaaatggtgttcagtatgt 2812



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>gb|AC016877.11| Homo sapiens chromosome 8, clone RP11-44N12, complete sequence
          Length = 188593

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     gaacagatgaaaatacttt 39
              |||||||||||||||||||
Sbjct: 176156 gaacagatgaaaatacttt 176138



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>gb|AC122039.4| Mus musculus BAC clone RP24-432H3 from chromosome 6, complete sequence
          Length = 169274

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    actgaacagatgaaaatac 36
             |||||||||||||||||||
Sbjct: 83319 actgaacagatgaaaatac 83301



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>gb|AC161456.3| Mus musculus BAC clone RP23-190H11 from chromosome 6, complete sequence
          Length = 208350

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    actgaacagatgaaaatac 36
             |||||||||||||||||||
Sbjct: 45428 actgaacagatgaaaatac 45446



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>gb|AC119567.11| Homo sapiens X BAC RP11-416J16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 79556

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    acttcactgaacagatgaa 31
             |||||||||||||||||||
Sbjct: 31936 acttcactgaacagatgaa 31954



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>gb|AC104986.5| Homo sapiens chromosome 8, clone RP11-410L14, complete sequence
          Length = 153411

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    gaacagatgaaaatacttt 39
             |||||||||||||||||||
Sbjct: 53057 gaacagatgaaaatacttt 53075



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>gb|AC183297.3| Pan troglodytes BAC clone CH251-300E12 from chromosome 18, complete
              sequence
          Length = 173095

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 145    cagtatgtctgtaaacaga 163
              |||||||||||||||||||
Sbjct: 153033 cagtatgtctgtaaacaga 153051



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>gb|AC153014.4| Mus musculus BAC clone RP23-203I6 from chromosome 19, complete sequence
          Length = 195382

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 130   acagaaaatggtgttcagtatgt 152
             |||| ||||||||||||||||||
Sbjct: 47575 acaggaaatggtgttcagtatgt 47553



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>gb|AC155949.8| Mus musculus 6 BAC RP24-407P20 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 179931

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    aaaacttcactgaacagat 28
             |||||||||||||||||||
Sbjct: 87696 aaaacttcactgaacagat 87678



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>gb|AC139452.4| Homo sapiens 3 BAC RP11-301L7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164897

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    ttcactgaacagatgaaaa 33
             |||||||||||||||||||
Sbjct: 45268 ttcactgaacagatgaaaa 45250



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>gb|AC027130.5|AC027130 Homo sapiens chromosome 16 clone CTD-2380F24, complete sequence
          Length = 134640

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 134   aaaatggtgttcagtatgt 152
             |||||||||||||||||||
Sbjct: 91550 aaaatggtgttcagtatgt 91532



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>gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, complete sequence
          Length = 171048

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 134    aaaatggtgttcagtatgt 152
              |||||||||||||||||||
Sbjct: 110049 aaaatggtgttcagtatgt 110067



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>emb|AL954678.8| Zebrafish DNA sequence from clone CH211-207E14 in linkage group 9,
              complete sequence
          Length = 219500

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 130    acagaaaatggtgttcagt 148
              |||||||||||||||||||
Sbjct: 119255 acagaaaatggtgttcagt 119237



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>dbj|AP003062.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-555G19, complete
             sequence
          Length = 171428

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    acagatgaaaatactttag 41
             |||||||||||||||||||
Sbjct: 87708 acagatgaaaatactttag 87690



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>gb|AC107648.11| Mus musculus chromosome 19, clone RP23-126M4, complete sequence
          Length = 210931

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 130   acagaaaatggtgttcagtatgt 152
             |||| ||||||||||||||||||
Sbjct: 47568 acaggaaatggtgttcagtatgt 47546



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>gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, complete sequence
          Length = 155483

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 88    gcaggcaaaacattctcag 106
             |||||||||||||||||||
Sbjct: 69068 gcaggcaaaacattctcag 69086



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>gb|BC084841.1| Xenopus laevis hypothetical LOC495375, mRNA (cDNA clone MGC:85415
           IMAGE:6933368), complete cds
          Length = 812

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 132 agaaaatggtgttcagtat 150
           |||||||||||||||||||
Sbjct: 684 agaaaatggtgttcagtat 702



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>dbj|AP005121.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-527H14, complete
             sequence
          Length = 155150

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    acagatgaaaatactttag 41
             |||||||||||||||||||
Sbjct: 95986 acagatgaaaatactttag 96004



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>emb|AL359312.18| Human DNA sequence from clone RP11-216E19 on chromosome 18, complete
              sequence
          Length = 143463

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     acagatgaaaatactttag 41
              |||||||||||||||||||
Sbjct: 120824 acagatgaaaatactttag 120842



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>emb|AL513351.26| Mouse DNA sequence from clone RP23-122P5 on chromosome 1, complete
            sequence
          Length = 224628

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 17   cactgaacagatgaaaata 35
            |||||||||||||||||||
Sbjct: 3401 cactgaacagatgaaaata 3419



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>dbj|AP004294.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1651H12
          Length = 180236

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    gaacagatgaaaatacttt 39
             |||||||||||||||||||
Sbjct: 17812 gaacagatgaaaatacttt 17794


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,745,215
Number of Sequences: 3902068
Number of extensions: 1745215
Number of successful extensions: 117703
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117627
Number of HSP's gapped (non-prelim): 76
length of query: 171
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 149
effective length of database: 17,147,199,772
effective search space: 2554932766028
effective search space used: 2554932766028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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