ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet61c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRM2_MACNE (P35298) Protamine-2 (Protamine-P2) (Sperm histone P2) 28 6.6
2PRM2_MACFU (P61253) Protamine-2 (Protamine-P2) (Sperm histone P2) 28 6.6
3PRM2_ERYPA (Q9GKM0) Protamine-2 (Protamine-P2) (Sperm histone P2) 28 6.6
4SAHH_METAC (Q8TRA5) Adenosylhomocysteinase (EC 3.3.1.1) (S-adeno... 28 6.6
5FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor 28 8.6

>PRM2_MACNE (P35298) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 103

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 32  EGLAPHKCTSIKYTHPHHTHQSKRYDTRKQVGTFLLARRHRCC 160
           +GL P      + TH  H+H  +R  +R+++   +  RRHR C
Sbjct: 34  QGLNPEHVEVYERTHRGHSHHRRRRCSRRRLHR-IHRRRHRSC 75



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>PRM2_MACFU (P61253) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 103

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 32  EGLAPHKCTSIKYTHPHHTHQSKRYDTRKQVGTFLLARRHRCC 160
           +GL P      + TH  H+H  +R  +R+++   +  RRHR C
Sbjct: 34  QGLNPEHVEVYERTHRGHSHHRRRRCSRRRLHR-IHRRRHRSC 75



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>PRM2_ERYPA (Q9GKM0) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 103

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 32  EGLAPHKCTSIKYTHPHHTHQSKRYDTRKQVGTFLLARRHRCC 160
           +GL+P      + TH  H+H  +R  +++++   +  RRHR C
Sbjct: 34  QGLSPEHVEVYERTHQGHSHHRRRRCSQRRLHR-IHRRRHRSC 75



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>SAHH_METAC (Q8TRA5) Adenosylhomocysteinase (EC 3.3.1.1)|
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
          Length = 411

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 95  SKRYDTRKQVGTFLLARRHRCCSNEYYQ 178
           ++  DTRK +  F    R+ CC++EYY+
Sbjct: 81  ARALDTRKNISCFA---RYGCCTSEYYE 105



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>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor|
          Length = 4010

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 20  CLHIEGLAPHKCTSIKYTH 76
           CL  EG +PH CT  + TH
Sbjct: 717 CLTCEGKSPHNCTGCESTH 735


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,247,710
Number of Sequences: 219361
Number of extensions: 587507
Number of successful extensions: 1544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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