ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet61b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.11
2gb|AY887063.1| Hordeum vulgare aerobic Mg-protoporphyrin IX mono... 44 0.11
3dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.11
4dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.11
5dbj|AK069333.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.11
6dbj|AK061646.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.11
7dbj|AK059435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.11
8dbj|AK058287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.11
9emb|BX005239.8| Zebrafish DNA sequence from clone CH211-144F7 in... 42 0.42
10gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 42 0.42
11gb|AC102333.10| Mus musculus chromosome 18, clone RP24-542P12, c... 40 1.6
12ref|XM_549074.2| PREDICTED: Canis familiaris hypothetical LOC491... 40 1.6
13gb|AC161175.5| Mus musculus chromosome 18, clone RP23-2J13, comp... 40 1.6
14gb|AY542959.1| Simian immunodeficiency virus gp41 (env) and nef ... 38 6.5
15ref|XM_529037.1| PREDICTED: Pan troglodytes similar to Nance-Hor... 38 6.5
16gb|AC102296.6| Mus musculus chromosome 3, clone RP24-389G6, comp... 38 6.5
17emb|BX119917.9| Human DNA sequence from clone RP11-262D11 on chr... 38 6.5
18ref|NM_001013627.1| Homo sapiens similar to Nance-Horan syndrome... 38 6.5
19dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 38 6.5
20ref|XM_936425.1| PREDICTED: Homo sapiens similar to Nance-Horan ... 38 6.5
21gb|AC090226.3| Homo sapiens chromosome 18, clone RP11-723D20, co... 38 6.5
22gb|AC020978.10| Homo sapiens chromosome 16 clone RP11-96D1, comp... 38 6.5
23gb|BC033261.1| Homo sapiens, clone IMAGE:5459109, mRNA 38 6.5
24gb|AF078842.1|AF078842 Homo sapiens HOTTL protein mRNA, complete... 38 6.5

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 69      tgatgcagttcactgccactta 90
               ||||||||||||||||||||||
Sbjct: 9875448 tgatgcagttcactgccactta 9875427



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>gb|AY887063.1| Hordeum vulgare aerobic Mg-protoporphyrin IX monomethyl ester cyclase
            (Xantha-l) gene, complete cds
          Length = 2097

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 116  caggtgagcacaggaagatgta 137
            ||||||||||||||||||||||
Sbjct: 2097 caggtgagcacaggaagatgta 2076



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>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0025D05
          Length = 145684

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 69     tgatgcagttcactgccactta 90
              ||||||||||||||||||||||
Sbjct: 139698 tgatgcagttcactgccactta 139677



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>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0003H10
          Length = 142418

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 69    tgatgcagttcactgccactta 90
             ||||||||||||||||||||||
Sbjct: 11214 tgatgcagttcactgccactta 11193



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>dbj|AK069333.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014B03, full
            insert sequence
          Length = 1691

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 69   tgatgcagttcactgccactta 90
            ||||||||||||||||||||||
Sbjct: 1483 tgatgcagttcactgccactta 1462



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>dbj|AK061646.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B09, full
           insert sequence
          Length = 618

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 69  tgatgcagttcactgccactta 90
           ||||||||||||||||||||||
Sbjct: 558 tgatgcagttcactgccactta 537



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>dbj|AK059435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F10, full
            insert sequence
          Length = 1944

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 69   tgatgcagttcactgccactta 90
            ||||||||||||||||||||||
Sbjct: 1473 tgatgcagttcactgccactta 1452



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>dbj|AK058287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E02, full
            insert sequence
          Length = 1533

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 69   tgatgcagttcactgccactta 90
            ||||||||||||||||||||||
Sbjct: 1469 tgatgcagttcactgccactta 1448



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>emb|BX005239.8| Zebrafish DNA sequence from clone CH211-144F7 in linkage group 18,
              complete sequence
          Length = 168745

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 6      cacaagttacatgacaacttcacat 30
              ||||||||||||||| |||||||||
Sbjct: 144894 cacaagttacatgacgacttcacat 144918



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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 42      tccgaagcaaaaccggaacac 62
               |||||||||||||||||||||
Sbjct: 2107746 tccgaagcaaaaccggaacac 2107726



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>gb|AC102333.10| Mus musculus chromosome 18, clone RP24-542P12, complete sequence
          Length = 188821

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    acttcacatacacttctcca 41
             ||||||||||||||||||||
Sbjct: 38617 acttcacatacacttctcca 38598



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>ref|XM_549074.2| PREDICTED: Canis familiaris hypothetical LOC491954 (LOC491954), mRNA
          Length = 2952

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   tctccatccgaagcaaaacc 55
            ||||||||||||||||||||
Sbjct: 2090 tctccatccgaagcaaaacc 2109



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>gb|AC161175.5| Mus musculus chromosome 18, clone RP23-2J13, complete sequence
          Length = 225231

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   acttcacatacacttctcca 41
            ||||||||||||||||||||
Sbjct: 3287 acttcacatacacttctcca 3268



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>gb|AY542959.1| Simian immunodeficiency virus gp41 (env) and nef protein (nef)
           genes, partial cds
          Length = 699

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 71  atgcagttcactgccactt 89
           |||||||||||||||||||
Sbjct: 227 atgcagttcactgccactt 209



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>ref|XM_529037.1| PREDICTED: Pan troglodytes similar to Nance-Horan syndrome protein
            (LOC473664), mRNA
          Length = 3312

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 36   tctccatccgaagcaaaac 54
            |||||||||||||||||||
Sbjct: 1997 tctccatccgaagcaaaac 2015



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>gb|AC102296.6| Mus musculus chromosome 3, clone RP24-389G6, complete sequence
          Length = 184243

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     cacatacacttctccatcc 44
              |||||||||||||||||||
Sbjct: 133185 cacatacacttctccatcc 133167



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>emb|BX119917.9| Human DNA sequence from clone RP11-262D11 on chromosome X Contains the
             gene for a novel protein (KIAA2001), the gene for a novel
             protein similar to multidomain presynaptic cytomatrix
             protein Piccolo; piccolo (presynaptic cytomatrix protein),
             an apoptosis inhibitor (FKSG2) pseudogene, the PIN4 gene
             for protein (peptidyl-prolyl cis/trans isomerase)
             NIMA-interacting 4 (parvulin), the 3' end of the gene for
             a novel protein (FLJ20105) and a two CpG islands, complete
             sequence
          Length = 134620

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    tctccatccgaagcaaaac 54
             |||||||||||||||||||
Sbjct: 61345 tctccatccgaagcaaaac 61363



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>ref|NM_001013627.1| Homo sapiens similar to Nance-Horan syndrome protein (LOC340527),
            mRNA
          Length = 3978

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 36   tctccatccgaagcaaaac 54
            |||||||||||||||||||
Sbjct: 2527 tctccatccgaagcaaaac 2545



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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 28      catacacttctccatccga 46
               |||||||||||||||||||
Sbjct: 1438106 catacacttctccatccga 1438124



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>ref|XM_936425.1| PREDICTED: Homo sapiens similar to Nance-Horan syndrome protein
            (LOC340527), mRNA
          Length = 3147

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 36   tctccatccgaagcaaaac 54
            |||||||||||||||||||
Sbjct: 1946 tctccatccgaagcaaaac 1964



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>gb|AC090226.3| Homo sapiens chromosome 18, clone RP11-723D20, complete sequence
          Length = 173602

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    tacaggtgagcacaggaag 132
              |||||||||||||||||||
Sbjct: 104486 tacaggtgagcacaggaag 104504



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>gb|AC020978.10| Homo sapiens chromosome 16 clone RP11-96D1, complete sequence
          Length = 164293

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 17    tgacaacttcacatacacttctccatc 43
             |||||| ||||||||||| ||||||||
Sbjct: 54092 tgacaatttcacatacacctctccatc 54118



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>gb|BC033261.1| Homo sapiens, clone IMAGE:5459109, mRNA
          Length = 4002

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 36   tctccatccgaagcaaaac 54
            |||||||||||||||||||
Sbjct: 2527 tctccatccgaagcaaaac 2545



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>gb|AF078842.1|AF078842 Homo sapiens HOTTL protein mRNA, complete cds
          Length = 1684

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 56  ggaacacatgctctgatgc 74
           |||||||||||||||||||
Sbjct: 290 ggaacacatgctctgatgc 308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,157,073
Number of Sequences: 3902068
Number of extensions: 1157073
Number of successful extensions: 74789
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74713
Number of HSP's gapped (non-prelim): 76
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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