| Clone Name | rbaet61b09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 tgatgcagttcactgccactta 90 |||||||||||||||||||||| Sbjct: 9875448 tgatgcagttcactgccactta 9875427
>gb|AY887063.1| Hordeum vulgare aerobic Mg-protoporphyrin IX monomethyl ester cyclase (Xantha-l) gene, complete cds Length = 2097 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 116 caggtgagcacaggaagatgta 137 |||||||||||||||||||||| Sbjct: 2097 caggtgagcacaggaagatgta 2076
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025D05 Length = 145684 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 tgatgcagttcactgccactta 90 |||||||||||||||||||||| Sbjct: 139698 tgatgcagttcactgccactta 139677
>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0003H10 Length = 142418 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 tgatgcagttcactgccactta 90 |||||||||||||||||||||| Sbjct: 11214 tgatgcagttcactgccactta 11193
>dbj|AK069333.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014B03, full insert sequence Length = 1691 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 tgatgcagttcactgccactta 90 |||||||||||||||||||||| Sbjct: 1483 tgatgcagttcactgccactta 1462
>dbj|AK061646.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B09, full insert sequence Length = 618 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 tgatgcagttcactgccactta 90 |||||||||||||||||||||| Sbjct: 558 tgatgcagttcactgccactta 537
>dbj|AK059435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F10, full insert sequence Length = 1944 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 tgatgcagttcactgccactta 90 |||||||||||||||||||||| Sbjct: 1473 tgatgcagttcactgccactta 1452
>dbj|AK058287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E02, full insert sequence Length = 1533 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 tgatgcagttcactgccactta 90 |||||||||||||||||||||| Sbjct: 1469 tgatgcagttcactgccactta 1448
>emb|BX005239.8| Zebrafish DNA sequence from clone CH211-144F7 in linkage group 18, complete sequence Length = 168745 Score = 42.1 bits (21), Expect = 0.42 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 cacaagttacatgacaacttcacat 30 ||||||||||||||| ||||||||| Sbjct: 144894 cacaagttacatgacgacttcacat 144918
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 42.1 bits (21), Expect = 0.42 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 tccgaagcaaaaccggaacac 62 ||||||||||||||||||||| Sbjct: 2107746 tccgaagcaaaaccggaacac 2107726
>gb|AC102333.10| Mus musculus chromosome 18, clone RP24-542P12, complete sequence Length = 188821 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 acttcacatacacttctcca 41 |||||||||||||||||||| Sbjct: 38617 acttcacatacacttctcca 38598
>ref|XM_549074.2| PREDICTED: Canis familiaris hypothetical LOC491954 (LOC491954), mRNA Length = 2952 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tctccatccgaagcaaaacc 55 |||||||||||||||||||| Sbjct: 2090 tctccatccgaagcaaaacc 2109
>gb|AC161175.5| Mus musculus chromosome 18, clone RP23-2J13, complete sequence Length = 225231 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 acttcacatacacttctcca 41 |||||||||||||||||||| Sbjct: 3287 acttcacatacacttctcca 3268
>gb|AY542959.1| Simian immunodeficiency virus gp41 (env) and nef protein (nef) genes, partial cds Length = 699 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 atgcagttcactgccactt 89 ||||||||||||||||||| Sbjct: 227 atgcagttcactgccactt 209
>ref|XM_529037.1| PREDICTED: Pan troglodytes similar to Nance-Horan syndrome protein (LOC473664), mRNA Length = 3312 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 tctccatccgaagcaaaac 54 ||||||||||||||||||| Sbjct: 1997 tctccatccgaagcaaaac 2015
>gb|AC102296.6| Mus musculus chromosome 3, clone RP24-389G6, complete sequence Length = 184243 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cacatacacttctccatcc 44 ||||||||||||||||||| Sbjct: 133185 cacatacacttctccatcc 133167
>emb|BX119917.9| Human DNA sequence from clone RP11-262D11 on chromosome X Contains the gene for a novel protein (KIAA2001), the gene for a novel protein similar to multidomain presynaptic cytomatrix protein Piccolo; piccolo (presynaptic cytomatrix protein), an apoptosis inhibitor (FKSG2) pseudogene, the PIN4 gene for protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 4 (parvulin), the 3' end of the gene for a novel protein (FLJ20105) and a two CpG islands, complete sequence Length = 134620 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 tctccatccgaagcaaaac 54 ||||||||||||||||||| Sbjct: 61345 tctccatccgaagcaaaac 61363
>ref|NM_001013627.1| Homo sapiens similar to Nance-Horan syndrome protein (LOC340527), mRNA Length = 3978 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 tctccatccgaagcaaaac 54 ||||||||||||||||||| Sbjct: 2527 tctccatccgaagcaaaac 2545
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 catacacttctccatccga 46 ||||||||||||||||||| Sbjct: 1438106 catacacttctccatccga 1438124
>ref|XM_936425.1| PREDICTED: Homo sapiens similar to Nance-Horan syndrome protein (LOC340527), mRNA Length = 3147 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 tctccatccgaagcaaaac 54 ||||||||||||||||||| Sbjct: 1946 tctccatccgaagcaaaac 1964
>gb|AC090226.3| Homo sapiens chromosome 18, clone RP11-723D20, complete sequence Length = 173602 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 114 tacaggtgagcacaggaag 132 ||||||||||||||||||| Sbjct: 104486 tacaggtgagcacaggaag 104504
>gb|AC020978.10| Homo sapiens chromosome 16 clone RP11-96D1, complete sequence Length = 164293 Score = 38.2 bits (19), Expect = 6.5 Identities = 25/27 (92%) Strand = Plus / Plus Query: 17 tgacaacttcacatacacttctccatc 43 |||||| ||||||||||| |||||||| Sbjct: 54092 tgacaatttcacatacacctctccatc 54118
>gb|BC033261.1| Homo sapiens, clone IMAGE:5459109, mRNA Length = 4002 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 tctccatccgaagcaaaac 54 ||||||||||||||||||| Sbjct: 2527 tctccatccgaagcaaaac 2545
>gb|AF078842.1|AF078842 Homo sapiens HOTTL protein mRNA, complete cds Length = 1684 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 ggaacacatgctctgatgc 74 ||||||||||||||||||| Sbjct: 290 ggaacacatgctctgatgc 308 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,157,073 Number of Sequences: 3902068 Number of extensions: 1157073 Number of successful extensions: 74789 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74713 Number of HSP's gapped (non-prelim): 76 length of query: 137 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 116 effective length of database: 17,151,101,840 effective search space: 1989527813440 effective search space used: 1989527813440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)