| Clone Name | rbaet61b01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY818921.1| Plantago media photosystem I P700 apoprotein A1 (psaA) gene, partial cds; and photosystem I assembly protein ycf3 (ycf3) gene, complete cds; chloroplast Length = 2788 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 cttaaataagggatatcata 49 |||||||||||||||||||| Sbjct: 411 cttaaataagggatatcata 392
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 agatcaagttgtgaatgaga 104 |||||||||||||||||||| Sbjct: 4968052 agatcaagttgtgaatgaga 4968033 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 tagagacaaaatgaagacg 78 ||||||||||||||||||| Sbjct: 15304009 tagagacaaaatgaagacg 15303991 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 tagagacaaaatgaagacg 78 ||||||||||||||||||| Sbjct: 15303402 tagagacaaaatgaagacg 15303384
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 agatcaagttgtgaatgaga 104 |||||||||||||||||||| Sbjct: 27495 agatcaagttgtgaatgaga 27514
>gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0064E16, from chromosome 3, complete sequence Length = 139123 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 agatcaagttgtgaatgaga 104 |||||||||||||||||||| Sbjct: 32506 agatcaagttgtgaatgaga 32487
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 agatcaagttgtgaatgaga 104 |||||||||||||||||||| Sbjct: 408336 agatcaagttgtgaatgaga 408317
>gb|AC165262.2| Mus musculus BAC clone RP23-89H5 from chromosome 14, complete sequence Length = 201412 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tcaagttgtgaatgagacag 107 |||||||||||||||||||| Sbjct: 118547 tcaagttgtgaatgagacag 118566
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 agatcaagttgtgaatgaga 104 |||||||||||||||||||| Sbjct: 4967267 agatcaagttgtgaatgaga 4967248 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 tagagacaaaatgaagacg 78 ||||||||||||||||||| Sbjct: 15298543 tagagacaaaatgaagacg 15298525 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 tagagacaaaatgaagacg 78 ||||||||||||||||||| Sbjct: 15297936 tagagacaaaatgaagacg 15297918
>gb|AC154206.2| Mus musculus BAC clone RP24-104P20 from 14, complete sequence Length = 167116 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tcaagttgtgaatgagacag 107 |||||||||||||||||||| Sbjct: 114471 tcaagttgtgaatgagacag 114452
>gb|AC136987.11| Mus musculus chromosome 16, clone RP24-129J16, complete sequence Length = 155372 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 gctagagacaaaatgaaga 76 ||||||||||||||||||| Sbjct: 3798 gctagagacaaaatgaaga 3816
>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete sequence Length = 137709 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 tagagacaaaatgaagacg 78 ||||||||||||||||||| Sbjct: 33946 tagagacaaaatgaagacg 33964 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 tagagacaaaatgaagacg 78 ||||||||||||||||||| Sbjct: 33339 tagagacaaaatgaagacg 33357
>gb|AC109831.5| Mus musculus BAC clone RP24-104B17 from chromosome 9, complete sequence Length = 138096 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 37 aagggatatcataaaagccgagc 59 |||||||||||| |||||||||| Sbjct: 14416 aagggatatcatcaaagccgagc 14438
>ref|XM_948070.1| Theileria annulata strain Ankara bifunctional dihydrofolate reductase/thymidilate synthase (TA08775) partial mRNA Length = 1572 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 30 cttaaataagggatatcataaaa 52 ||||||||| ||||||||||||| Sbjct: 750 cttaaataacggatatcataaaa 772
>emb|AL139115.5| Human DNA sequence from clone RP11-335L15 on chromosome 9 Contains the 3' end of the SH3GL2 gene for SH3-domain GRB2-like 2 (CNSA2, SH3P4, EEN-B1, SH3D2A), complete sequence Length = 148082 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 acaaaatgaagacgattgataga 87 |||||||||||||||| |||||| Sbjct: 145268 acaaaatgaagacgatggataga 145246
>emb|Z97344.2|ATFCA9 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9 Length = 81835 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 78719 ttaaataagggatatcata 78737
>emb|Z97342.2|ATFCA7 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 7 Length = 201471 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 134023 ttaaataagggatatcata 134005
>emb|X99657.1|HSSH3GL2 H.sapiens mRNA for protein containing SH3 domain, SH3GL2 Length = 2445 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 acaaaatgaagacgattgataga 87 |||||||||||||||| |||||| Sbjct: 2199 acaaaatgaagacgatggataga 2177
>emb|BX538074.1|HSM806253 Homo sapiens mRNA; cDNA DKFZp686B23205 (from clone DKFZp686B23205) Length = 2450 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 acaaaatgaagacgattgataga 87 |||||||||||||||| |||||| Sbjct: 2183 acaaaatgaagacgatggataga 2161
>gb|BC032825.2| Homo sapiens SH3-domain GRB2-like 2, mRNA (cDNA clone MGC:26367 IMAGE:4820321), complete cds Length = 2507 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 acaaaatgaagacgattgataga 87 |||||||||||||||| |||||| Sbjct: 2246 acaaaatgaagacgatggataga 2224
>emb|AL109819.1|ATT28D5 Arabidopsis thaliana DNA chromosome 4, BAC clone T28D5, partial sequence (ESSA project) Length = 96256 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 74035 ttaaataagggatatcata 74017
>emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47 Length = 198067 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 73731 ttaaataagggatatcata 73749
>emb|AL161545.2|ATCHRIV45 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 45 Length = 199548 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 119852 ttaaataagggatatcata 119834
>emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 36 Length = 199634 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 104233 ttaaataagggatatcata 104215
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34 Length = 196107 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 32253 ttaaataagggatatcata 32235
>emb|AL161511.2|ATCHRIV23 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 23 Length = 197306 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 100928 ttaaataagggatatcata 100910
>emb|AL138641.2|ATT22K7 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7 Length = 82316 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 71900 ttaaataagggatatcata 71918
>emb|AL138654.1|ATF18P9 Arabidopsis thaliana DNA chromosome 3, BAC clone F18P9 Length = 95996 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 21752 ttaaataagggatatcata 21770
>emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome 3, BAC clone F13I12 Length = 140680 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 84926 ttaaataagggatatcata 84944
>emb|AL133363.1|ATT20E23 Arabidopsis thaliana DNA chromosome 3, BAC clone T20E23 Length = 83513 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 24870 ttaaataagggatatcata 24852
>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project) Length = 137519 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 27721 ttaaataagggatatcata 27703
>emb|AL049656.1|ATT6G15 Arabidopsis thaliana DNA chromosome 4, BAC clone T6G15 (ESSA project) Length = 113970 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 2026 ttaaataagggatatcata 2008
>emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence (ESSA project) Length = 95432 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 88254 ttaaataagggatatcata 88236
>gb|AC161424.3| Mus musculus BAC clone RP23-252J6 from chromosome 9, complete sequence Length = 244497 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 37 aagggatatcataaaagccgagc 59 |||||||||||| |||||||||| Sbjct: 199617 aagggatatcatcaaagccgagc 199639
>emb|CR601861.1| full-length cDNA clone CS0DF034YD03 of Fetal brain of Homo sapiens (human) Length = 1627 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 acaaaatgaagacgattgataga 87 |||||||||||||||| |||||| Sbjct: 1392 acaaaatgaagacgatggataga 1370
>gb|AC007178.6| Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence Length = 116149 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 8315 ttaaataagggatatcata 8333
>gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete sequence Length = 104016 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 90636 ttaaataagggatatcata 90618
>gb|AC025808.8|AC025808 Genomic sequence for Arabidopsis thaliana BAC F18O14 from chromosome I, complete sequence Length = 120977 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 38055 ttaaataagggatatcata 38037
>gb|AF262039.1|F24J2 Arabidopsis thaliana BAC F24J2 Length = 80472 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 16252 ttaaataagggatatcata 16270
>gb|AC068602.2|AC068602 Genomic sequence for Arabidopsis thaliana BAC F14D16 from chromosome I, complete sequence Length = 87508 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 13950 ttaaataagggatatcata 13932
>gb|AC012187.3|F13K23 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence Length = 74328 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 57272 ttaaataagggatatcata 57290
>gb|AF036268.1|AF036268 Homo sapiens EEN-B1 mRNA, complete cds Length = 2540 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 acaaaatgaagacgattgataga 87 |||||||||||||||| |||||| Sbjct: 2237 acaaaatgaagacgatggataga 2215
>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19 Length = 84129 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ttaaataagggatatcata 49 ||||||||||||||||||| Sbjct: 9917 ttaaataagggatatcata 9899
>dbj|AK057744.1| Homo sapiens cDNA FLJ25015 fis, clone CBL01559 Length = 1414 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 acaaaatgaagacgattgataga 87 |||||||||||||||| |||||| Sbjct: 1168 acaaaatgaagacgatggataga 1146
>gb|AC140198.4| Mus musculus BAC clone RP23-255C4 from 16, complete sequence Length = 198007 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 gctagagacaaaatgaaga 76 ||||||||||||||||||| Sbjct: 183437 gctagagacaaaatgaaga 183455
>ref|NM_003026.1| Homo sapiens SH3-domain GRB2-like 2 (SH3GL2), mRNA Length = 2540 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 acaaaatgaagacgattgataga 87 |||||||||||||||| |||||| Sbjct: 2237 acaaaatgaagacgatggataga 2215
>emb|AL133373.5|CNS01DUY Human chromosome 14 DNA sequence BAC R-248B24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162943 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 aataaatggcttaaataag 39 ||||||||||||||||||| Sbjct: 93520 aataaatggcttaaataag 93538 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,128,332 Number of Sequences: 3902068 Number of extensions: 1128332 Number of successful extensions: 70612 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70438 Number of HSP's gapped (non-prelim): 174 length of query: 109 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 88 effective length of database: 17,151,101,840 effective search space: 1509296961920 effective search space used: 1509296961920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)