ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet61a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VAL1_BCTV (P14991) AL1 protein (40.8 kDa protein) 28 4.8
2SYN_PORGI (Q7MVE5) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (As... 28 8.2
3SYN_BACTN (Q8A0Z8) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (As... 28 8.2

>VAL1_BCTV (P14991) AL1 protein (40.8 kDa protein)|
          Length = 358

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 49  P*QYISYVHEGSSSAAITTHYRQRGAHNFIAHEMENPIKLTY 174
           P +Y S + EG S    T   R  GAHN+I   ++  ++  Y
Sbjct: 212 PLRYNSIIVEGDSRTGKTMWARSLGAHNYITGHLDFSLRTYY 253



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>SYN_PORGI (Q7MVE5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 469

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 227 WSIHTYIRFISLSINGDI*VSFIGFSISWAMKLC 126
           W I   + F+ +  N D+   FI + + WA+  C
Sbjct: 248 WMIEPEVAFLEIEDNMDLAEEFIKYCVQWALDNC 281



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>SYN_BACTN (Q8A0Z8) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 467

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 227 WSIHTYIRFISLSINGDI*VSFIGFSISWAMKLCA 123
           W I   + F  ++ N D+   FI + + WA+  CA
Sbjct: 246 WMIEPEVAFNDIADNMDLAEEFIKYCVKWALDNCA 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,040,525
Number of Sequences: 219361
Number of extensions: 581625
Number of successful extensions: 973
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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