| Clone Name | rbaet60h12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein Length = 1020 Score = 222 bits (112), Expect = 2e-55 Identities = 112/112 (100%) Strand = Plus / Minus Query: 39 gaattcacaggttttacacaagcaaattgacagggtcgatcgtcacaggtttcacagcac 98 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1020 gaattcacaggttttacacaagcaaattgacagggtcgatcgtcacaggtttcacagcac 961 Query: 99 cacaaactgatggaccgatcgaccctgggaatgggatggattcattcattca 150 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 960 cacaaactgatggaccgatcgaccctgggaatgggatggattcattcattca 909
>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA, complete cds Length = 1133 Score = 60.0 bits (30), Expect = 2e-06 Identities = 64/74 (86%), Gaps = 6/74 (8%) Strand = Plus / Minus Query: 8 ctcaactgaacttgaaattactcgggcgga-----cgaattcacaggttttacacaagca 62 ||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||| Sbjct: 1099 ctcaactcaacttgaaattactcgggcgggacgggcgaattcacag-ttttacagaagca 1041 Query: 63 aattgacagggtcg 76 ||||||||| |||| Sbjct: 1040 aattgacagtgtcg 1027
>emb|BX897736.7| Zebrafish DNA sequence from clone CH211-181B15 in linkage group 17, complete sequence Length = 141987 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gggatggattcattcattca 150 |||||||||||||||||||| Sbjct: 10001 gggatggattcattcattca 10020
>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome Length = 164921 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aactgaacttgaaattactc 30 |||||||||||||||||||| Sbjct: 98129 aactgaacttgaaattactc 98148
>gb|AC113013.15| Mus musculus chromosome 7, clone RP23-174K7, complete sequence Length = 235823 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 132 ggatggattcattcattca 150 ||||||||||||||||||| Sbjct: 123677 ggatggattcattcattca 123659
>gb|AC169627.2| Mus musculus chromosome 5, clone wi1-232C12, complete sequence Length = 44799 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 actgaacttgaaattactc 30 ||||||||||||||||||| Sbjct: 39913 actgaacttgaaattactc 39931
>gb|AC122782.8| Mus musculus chromosome 5, clone RP24-224N3, complete sequence Length = 173643 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 actgaacttgaaattactc 30 ||||||||||||||||||| Sbjct: 12554 actgaacttgaaattactc 12572
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ttacacaagcaaattgaca 70 ||||||||||||||||||| Sbjct: 5770706 ttacacaagcaaattgaca 5770724
>gb|AC002307.1|HUAC002307 Homo sapiens Chromosome 16 BAC clone CIT987-SK37914 ~complete genomic sequence, complete sequence Length = 161580 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 123756 attcacaggttttacacaa 123738
>gb|AC114938.3| Homo sapiens chromosome 16 clone CTD-2244D9, complete sequence Length = 166928 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 6390 attcacaggttttacacaa 6372
>gb|AC094241.9| Rattus norvegicus 1 BAC CH230-3C7 (Children's Hospital Oakland Research Institute) complete sequence Length = 215638 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 ggatggattcattcattca 150 ||||||||||||||||||| Sbjct: 161106 ggatggattcattcattca 161124
>ref|XM_796784.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC577037, transcript variant 2 (LOC577037), mRNA Length = 4300 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 acagcaccacaaactgatg 110 ||||||||||||||||||| Sbjct: 3837 acagcaccacaaactgatg 3819
>ref|XM_775014.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC577037, transcript variant 1 (LOC577037), mRNA Length = 4269 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 acagcaccacaaactgatg 110 ||||||||||||||||||| Sbjct: 3806 acagcaccacaaactgatg 3788
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 aactgaacttgaaattact 29 ||||||||||||||||||| Sbjct: 2771253 aactgaacttgaaattact 2771235
>gb|AC141070.2| Homo sapiens chromosome 16 clone RP11-171B13, complete sequence Length = 161261 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 87559 attcacaggttttacacaa 87541
>emb|BX511257.16| Zebrafish DNA sequence from clone DKEY-280E21 in linkage group 14, complete sequence Length = 166973 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 acctcaactgaacttgaaa 24 ||||||||||||||||||| Sbjct: 154358 acctcaactgaacttgaaa 154376
>emb|AL772279.7| Zebrafish DNA sequence from clone CH211-191N13 in linkage group 7 Contains a putative novel gene, a novel retrotransposon and eight CpG islands, complete sequence Length = 146786 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 ggatggattcattcattca 150 ||||||||||||||||||| Sbjct: 133007 ggatggattcattcattca 133025
>gb|AC023310.4| Homo sapiens chromosome 15, clone RP11-336L20, complete sequence Length = 177355 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 128 aatgggatggattcattcattca 150 |||||||| |||||||||||||| Sbjct: 47407 aatgggattgattcattcattca 47385
>gb|AC100757.2| Homo sapiens chromosome 15, clone RP11-566K19, complete sequence Length = 171987 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 128 aatgggatggattcattcattca 150 |||||||| |||||||||||||| Sbjct: 31404 aatgggattgattcattcattca 31382
>gb|AC133569.4| Homo sapiens chromosome 16 clone RP11-96K14, complete sequence Length = 107932 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 3345 attcacaggttttacacaa 3327
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 tgggatggattcattcatt 148 ||||||||||||||||||| Sbjct: 22720457 tgggatggattcattcatt 22720439 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 ttttacacaagcaaattga 68 ||||||||||||||||||| Sbjct: 21774443 ttttacacaagcaaattga 21774461
>gb|AC062039.3| Homo sapiens BAC clone RP11-814A15 from 2, complete sequence Length = 141040 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 ggatggattcattcattca 150 ||||||||||||||||||| Sbjct: 34557 ggatggattcattcattca 34575
>dbj|AB045779.1| Lentinula edodes Le.cyp1 gene for cytochrome P450 1, complete cds Length = 3987 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 127 gaatgggatggattcattcattc 149 |||||||||| |||||||||||| Sbjct: 3334 gaatgggatgcattcattcattc 3356
>gb|AC137800.3| Homo sapiens chromosome 16 clone RP11-652G5, complete sequence Length = 196550 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 82011 attcacaggttttacacaa 82029
>gb|AC141293.2| Homo sapiens chromosome 16 clone RP11-51M16, complete sequence Length = 185339 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 181995 attcacaggttttacacaa 182013
>gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, complete sequence Length = 167832 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 64125 attcacaggttttacacaa 64107
>gb|AC136687.6| Homo sapiens chromosome 15, clone RP11-439M15, complete sequence Length = 180708 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 128 aatgggatggattcattcattca 150 |||||||| |||||||||||||| Sbjct: 146597 aatgggattgattcattcattca 146619
>gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, complete sequence Length = 221622 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 151955 attcacaggttttacacaa 151973
>gb|AC134393.6| Homo sapiens chromosome 15, clone CTC-803A3, complete sequence Length = 132353 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 128 aatgggatggattcattcattca 150 |||||||| |||||||||||||| Sbjct: 74998 aatgggattgattcattcattca 74976
>gb|AC131280.9| Homo sapiens chromosome 15, clone RP11-467L19, complete sequence Length = 194754 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 128 aatgggatggattcattcattca 150 |||||||| |||||||||||||| Sbjct: 116188 aatgggattgattcattcattca 116210
>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534A03 Length = 153170 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 ttttacacaagcaaattga 68 ||||||||||||||||||| Sbjct: 91626 ttttacacaagcaaattga 91644
>dbj|AP003932.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1773_H01 Length = 146543 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 tgggatggattcattcatt 148 ||||||||||||||||||| Sbjct: 138355 tgggatggattcattcatt 138337
>dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1092_A07 Length = 137081 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 tgggatggattcattcatt 148 ||||||||||||||||||| Sbjct: 39799 tgggatggattcattcatt 39781
>emb|BX248393.5| Zebrafish DNA sequence from clone CH211-233O13, complete sequence Length = 166286 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 132 ggatggattcattcattca 150 ||||||||||||||||||| Sbjct: 94461 ggatggattcattcattca 94443
>dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, section 52/105 Length = 340000 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aactgaacttgaaattact 29 ||||||||||||||||||| Sbjct: 249759 aactgaacttgaaattact 249777
>gb|AC121101.8| Mus musculus chromosome 8, clone RP24-511A8, complete sequence Length = 158957 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 ggatggattcattcattca 150 ||||||||||||||||||| Sbjct: 101741 ggatggattcattcattca 101759
>gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, complete sequence Length = 182046 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 64125 attcacaggttttacacaa 64107
>gb|AC126939.5| Mus musculus BAC clone RP23-62M8 from 13, complete sequence Length = 236514 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 ggatggattcattcattca 150 ||||||||||||||||||| Sbjct: 218166 ggatggattcattcattca 218184
>gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, complete sequence Length = 184294 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 38149 attcacaggttttacacaa 38167
>gb|AC136437.2| Homo sapiens chromosome 16 clone RP11-347D23, complete sequence Length = 161397 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 128089 attcacaggttttacacaa 128071
>emb|AL732330.14| Mouse DNA sequence from clone RP23-130L11 on chromosome 2, complete sequence Length = 241418 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 132 ggatggattcattcattca 150 ||||||||||||||||||| Sbjct: 149171 ggatggattcattcattca 149153
>dbj|AP001069.1| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B382J1, SOD-AML region, complete sequence Length = 105567 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aactgaacttgaaattact 29 ||||||||||||||||||| Sbjct: 41704 aactgaacttgaaattact 41722 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,531,263 Number of Sequences: 3902068 Number of extensions: 1531263 Number of successful extensions: 258288 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 257989 Number of HSP's gapped (non-prelim): 299 length of query: 150 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 129 effective length of database: 17,151,101,840 effective search space: 2212492137360 effective search space used: 2212492137360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)