ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYB_ANTSW (Q33865) Cytochrome b 29 3.9
2BCL6B_HUMAN (Q8N143) B-cell CLL/lymphoma 6 member B protein (Bcl... 28 6.7
3TS1R3_RAT (Q923K1) Taste receptor type 1 member 3 precursor (Swe... 28 8.7

>CYB_ANTSW (Q33865) Cytochrome b|
          Length = 381

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 191 ASLFFSVCLEVHVSWVCYLCSYLLK 117
           AS+FF +CL +HV W  Y  SYL K
Sbjct: 87  ASMFF-MCLFLHVGWGIYYGSYLYK 110



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>BCL6B_HUMAN (Q8N143) B-cell CLL/lymphoma 6 member B protein (Bcl6-associated|
           zinc finger protein) (Zinc finger protein 62)
          Length = 480

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
 Frame = -2

Query: 192 CKSFFFSVFRGACIVGVLLVFL---------SAQVMVMVTTRLKLS 82
           C  FF+S+FRG   VGV ++ L         +  +  M T+RL+LS
Sbjct: 59  CSGFFYSIFRGRAGVGVDVLSLPGGPEARGFAPLLDFMYTSRLRLS 104



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>TS1R3_RAT (Q923K1) Taste receptor type 1 member 3 precursor (Sweet taste|
           receptor T1R3)
          Length = 858

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 164 EVHVSWVCYLCSYLLKSW*W 105
           E+ +SW  +LCSYL   W W
Sbjct: 668 ELPLSWANWLCSYLRGPWAW 687


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,799,759
Number of Sequences: 219361
Number of extensions: 460169
Number of successful extensions: 1722
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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