ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009629.1| Triticum aestivum clone wre1n.pk168.h11:fis, full... 327 1e-86
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 3e-10
3gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare str... 74 3e-10
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
5dbj|AK120113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
6dbj|AK060718.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
7gb|AY108579.1| Zea mays PCO102927 mRNA sequence 52 0.001
8gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 44 0.24
9ref|NM_118394.2| Arabidopsis thaliana MYB85; DNA binding / trans... 42 0.94
10gb|AY519608.1| Arabidopsis thaliana MYB transcription factor (At... 42 0.94
11gb|DQ446863.1| Arabidopsis thaliana clone pENTR221-At4g22680 myb... 42 0.94
12emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, ... 42 0.94
13emb|AL021635.1|ATT12H17 Arabidopsis thaliana DNA chromosome 4, B... 42 0.94
14gb|AF175993.2|AF175993 Arabidopsis thaliana putative transcripti... 42 0.94
15emb|BX829062.1|CNS0A3K8 Arabidopsis thaliana Full-length cDNA Co... 42 0.94
16gb|AY085497.1| Arabidopsis thaliana clone 154343 mRNA, complete ... 42 0.94
17dbj|AK175777.1| Arabidopsis thaliana mRNA for myb-like protein, ... 42 0.94
18dbj|AK175718.1| Arabidopsis thaliana mRNA for myb-like protein, ... 42 0.94
19gb|AC008317.7| Drosophila melanogaster clone BACR08N17, complete... 40 3.7
20gb|AC008356.6| Drosophila melanogaster clone BACR43K14, complete... 40 3.7
21ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfami... 40 3.7
22gb|AC146174.2| Pan troglodytes BAC clone CH251-549F12 from Y, co... 40 3.7
23ref|XM_948103.1| Theileria annulata strain Ankara hypothetical p... 40 3.7
24emb|AL050344.31|HSJ799D16 Human DNA sequence from clone RP4-799D... 40 3.7
25emb|Z98981.3|SPAC6F6 S.pombe chromosome I cosmid c6F6 40 3.7
26emb|AJ239043.1|BAP239043 Buchnera aphidicola partial yhbz; rpsI;... 40 3.7
27gb|AC079326.8| Homo sapiens chromosome 11, clone RP11-233I10, co... 40 3.7
28gb|AC078925.18| Homo sapiens 12q BAC RP11-76C10 (Roswell Park Ca... 40 3.7
29dbj|BS000614.1| Pan troglodytes chromosome Y clone:PTBY-009K01, ... 40 3.7
30dbj|BS000556.1| Pan troglodytes chromosome Y clone:PTB-461C11, c... 40 3.7
31gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 3.7
32ref|NM_001019329.1| Schizosaccharomyces pombe 972h- hypothetical... 40 3.7
33gb|AC153895.5| Mus musculus 6 BAC RP23-114F22 (Roswell Park Canc... 40 3.7
34gb|AC008537.5|AC008537 Homo sapiens chromosome 19 clone CTC-490E... 40 3.7
35gb|AC006040.3|AC006040 Homo sapiens BAC clone RP11-400O10 from Y... 40 3.7
36dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisu... 40 3.7
37gb|AC153618.4| Mus musculus 6 BAC RP23-5O1 (Roswell Park Cancer ... 40 3.7
38emb|CR456625.13| Zebrafish DNA sequence from clone DKEY-76G24 in... 40 3.7
39gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19... 40 3.7
40gb|AF041427.1|AF041427 Homo sapiens ribosomal protein s4 Y isofo... 40 3.7 
>gb|BT009629.1| Triticum aestivum clone wre1n.pk168.h11:fis, full insert mRNA
            sequence
          Length = 1391

 Score =  327 bits (165), Expect = 1e-86
 Identities = 186/192 (96%), Gaps = 2/192 (1%)
 Strand = Plus / Minus

                                                                        
Query: 93   cacgtcagtcgaatttgcctaccattattgacagctttgtgggtttgcaaaaggaagaca 152
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1214 cacgtcagtcaaatttgcctaccattattgacagctttgtgggtttgcaaaaggaagaga 1155

                                                                        
Query: 153  ggggcaaggaaaacgaagactcaaaaaattcctccacttcggcacataatatgtgcgtgg 212
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 agggcaaggaaaacgaagactcaaaaaattcctccacttcggcacataatatgtgcgtgg 1095

                                                                        
Query: 213  atgtggccttataatatactgatgccaaagcaagcaatcatcttgcctttgcagactgta 272
            |||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1094 atgtggcct--taatatactgatgccaaaacaagcaatcatcttgcctttgcagactgta 1037

                        
Query: 273  aacatggtacac 284
            ||||||||||||
Sbjct: 1036 aacatggtacac 1025



 Score =  137 bits (69), Expect = 2e-29
 Identities = 85/89 (95%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                        
Query: 6    agcttcattaaaattattggccgaaagacaacaatatccgaacacaaagatggaaaagta 65
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1324 agcttcattaaaattattggccgaaagacaacaatatccgaacac-aagatggaaaagta 1266

                                         
Query: 66   tcgtgacaattcatcatcatcataaaaca 94
            || |||| ||||||||||||| |||||||
Sbjct: 1265 tcatgacgattcatcatcatcgtaaaaca 1237
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                           
Query: 223     ataatatactgatgccaaagcaagcaatcatcttgcctttgcagactgtaaacatggtac 282
               |||||||||||||||||||  | ||||| |||||||||||||||| ||||||||| ||||
Sbjct: 5842767 ataatatactgatgccaaaagaggcaattatcttgcctttgcagaatgtaaacatagtac 5842708

                
Query: 283     a 283
               |
Sbjct: 5842707 a 5842707



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                             
Query: 93      cacgtcagtcgaatttgcctaccattattgacagctttgtgggttt 138
               ||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 5842890 cacgtcagttgaatttgcctatcattattgacagctttgttggttt 5842845
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>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0021B21, from chromosome 3, complete sequence
          Length = 139208

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                         
Query: 223   ataatatactgatgccaaagcaagcaatcatcttgcctttgcagactgtaaacatggtac 282
             |||||||||||||||||||  | ||||| |||||||||||||||| ||||||||| ||||
Sbjct: 71597 ataatatactgatgccaaaagaggcaattatcttgcctttgcagaatgtaaacatagtac 71538

              
Query: 283   a 283
             |
Sbjct: 71537 a 71537



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                           
Query: 93    cacgtcagtcgaatttgcctaccattattgacagctttgtgggttt 138
             ||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 71720 cacgtcagttgaatttgcctatcattattgacagctttgttggttt 71675
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                           
Query: 223     ataatatactgatgccaaagcaagcaatcatcttgcctttgcagactgtaaacatggtac 282
               |||||||||||||||||||  | ||||| |||||||||||||||| ||||||||| ||||
Sbjct: 5841980 ataatatactgatgccaaaagaggcaattatcttgcctttgcagaatgtaaacatagtac 5841921

                
Query: 283     a 283
               |
Sbjct: 5841920 a 5841920



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                             
Query: 93      cacgtcagtcgaatttgcctaccattattgacagctttgtgggttt 138
               ||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 5842103 cacgtcagttgaatttgcctatcattattgacagctttgttggttt 5842058
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>dbj|AK120113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025E12, full
            insert sequence
          Length = 2166

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 223  ataatatactgatgccaaagcaagcaatcatcttgcctttgcagactgtaaacatggtac 282
            |||||||||||||||||||  | ||||| |||||||||||||||| ||||||||| ||||
Sbjct: 1841 ataatatactgatgccaaaagaggcaattatcttgcctttgcagaatgtaaacatagtac 1782

             
Query: 283  a 283
            |
Sbjct: 1781 a 1781



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                          
Query: 93   cacgtcagtcgaatttgcctaccattattgacagctttgtgggttt 138
            ||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 1964 cacgtcagttgaatttgcctatcattattgacagctttgttggttt 1919
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>dbj|AK060718.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E10, full
            insert sequence
          Length = 1410

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 223  ataatatactgatgccaaagcaagcaatcatcttgcctttgcagactgtaaacatggtac 282
            |||||||||||||||||||  | ||||| |||||||||||||||| ||||||||| ||||
Sbjct: 1083 ataatatactgatgccaaaagaggcaattatcttgcctttgcagaatgtaaacatagtac 1024

             
Query: 283  a 283
            |
Sbjct: 1023 a 1023



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                          
Query: 93   cacgtcagtcgaatttgcctaccattattgacagctttgtgggttt 138
            ||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 1206 cacgtcagttgaatttgcctatcattattgacagctttgttggttt 1161
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>gb|AY108579.1| Zea mays PCO102927 mRNA sequence
          Length = 2137

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 93   cacgtcagtcgaatttgcctaccattattgacagctttgtgg 134
            |||||||||||||  |||||| |||||||||||| |||||||
Sbjct: 1953 cacgtcagtcgaacctgcctatcattattgacagatttgtgg 1912
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 147     aagacaggggcaaggaaaacga 168
               ||||||||||||||||||||||
Sbjct: 1831617 aagacaggggcaaggaaaacga 1831596
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>ref|NM_118394.2| Arabidopsis thaliana MYB85; DNA binding / transcription factor
           AT4G22680 (MYB85) mRNA, complete cds
          Length = 1386

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 71  acaattcatcatcatcataaa 91
           |||||||||||||||||||||
Sbjct: 734 acaattcatcatcatcataaa 714
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>gb|AY519608.1| Arabidopsis thaliana MYB transcription factor (At4g22680) mRNA,
           complete cds
          Length = 801

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 71  acaattcatcatcatcataaa 91
           |||||||||||||||||||||
Sbjct: 598 acaattcatcatcatcataaa 578
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>gb|DQ446863.1| Arabidopsis thaliana clone pENTR221-At4g22680 myb family
           transcription factor (At4g22680) mRNA, complete cds
          Length = 801

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 71  acaattcatcatcatcataaa 91
           |||||||||||||||||||||
Sbjct: 598 acaattcatcatcatcataaa 578
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>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57
          Length = 199577

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 71     acaattcatcatcatcataaa 91
              |||||||||||||||||||||
Sbjct: 159699 acaattcatcatcatcataaa 159719
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>emb|AL021635.1|ATT12H17 Arabidopsis thaliana DNA chromosome 4, BAC clone T12H17 (ESSAII
             project)
          Length = 89350

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    acaattcatcatcatcataaa 91
             |||||||||||||||||||||
Sbjct: 16030 acaattcatcatcatcataaa 16050
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>gb|AF175993.2|AF175993 Arabidopsis thaliana putative transcription factor (MYB85) mRNA,
           complete cds
          Length = 813

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 71  acaattcatcatcatcataaa 91
           |||||||||||||||||||||
Sbjct: 610 acaattcatcatcatcataaa 590
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>emb|BX829062.1|CNS0A3K8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL65ZC06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 912

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 71  acaattcatcatcatcataaa 91
           |||||||||||||||||||||
Sbjct: 561 acaattcatcatcatcataaa 541
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>gb|AY085497.1| Arabidopsis thaliana clone 154343 mRNA, complete sequence
          Length = 1154

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 71  acaattcatcatcatcataaa 91
           |||||||||||||||||||||
Sbjct: 734 acaattcatcatcatcataaa 714
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>dbj|AK175777.1| Arabidopsis thaliana mRNA for myb-like protein, complete cds,
           clone: RAFL22-35-I17
          Length = 1201

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 71  acaattcatcatcatcataaa 91
           |||||||||||||||||||||
Sbjct: 731 acaattcatcatcatcataaa 711
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>dbj|AK175718.1| Arabidopsis thaliana mRNA for myb-like protein, complete cds,
           clone: RAFL22-25-P15
          Length = 1201

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 71  acaattcatcatcatcataaa 91
           |||||||||||||||||||||
Sbjct: 731 acaattcatcatcatcataaa 711
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>gb|AC008317.7| Drosophila melanogaster clone BACR08N17, complete sequence
          Length = 169100

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    taagcttcattaaaattatt 23
            ||||||||||||||||||||
Sbjct: 6992 taagcttcattaaaattatt 7011
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>gb|AC008356.6| Drosophila melanogaster clone BACR43K14, complete sequence
          Length = 162593

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     taagcttcattaaaattatt 23
             ||||||||||||||||||||
Sbjct: 79017 taagcttcattaaaattatt 79036
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>ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfamily A (CYP2A) on
             chromosome 19
          Length = 413528

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   caagcaatcatcttgcctttgcag 266
             |||||||| |||||||||||||||
Sbjct: 67135 caagcaattatcttgcctttgcag 67112
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>gb|AC146174.2| Pan troglodytes BAC clone CH251-549F12 from Y, complete sequence
          Length = 191823

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 157    caaggaaaacgaagactcaaaaaa 180
              |||||||||| |||||||||||||
Sbjct: 115036 caaggaaaacaaagactcaaaaaa 115059
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>ref|XM_948103.1| Theileria annulata strain Ankara hypothetical protein (TA08965)
           partial mRNA
          Length = 3117

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 1   acataagcttcattaaaattattg 24
           |||||| |||||||||||||||||
Sbjct: 566 acataatcttcattaaaattattg 543
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>emb|AL050344.31|HSJ799D16 Human DNA sequence from clone RP4-799D16 on chromosome 1p34.3-36.1
             Contains the 3' end of a novel gene, complete sequence
          Length = 127109

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   caagcaatcatcttgccttt 262
             ||||||||||||||||||||
Sbjct: 83365 caagcaatcatcttgccttt 83384
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>emb|Z98981.3|SPAC6F6 S.pombe chromosome I cosmid c6F6
          Length = 43307

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 107   ttgcctaccattattgacagcttt 130
             ||||||||| ||||||||||||||
Sbjct: 16772 ttgcctacccttattgacagcttt 16749
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>emb|AJ239043.1|BAP239043 Buchnera aphidicola partial yhbz; rpsI; rplM; aroQ/pheA; ffh and
            partial rpsP genes
          Length = 4371

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   taaaattattggccgaaaga 33
            ||||||||||||||||||||
Sbjct: 1548 taaaattattggccgaaaga 1567
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>gb|AC079326.8| Homo sapiens chromosome 11, clone RP11-233I10, complete sequence
          Length = 180353

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   atgccaaagcaagcaatcat 253
             ||||||||||||||||||||
Sbjct: 95603 atgccaaagcaagcaatcat 95622
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>gb|AC078925.18| Homo sapiens 12q BAC RP11-76C10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 153284

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   caagcaatcatcttgccttt 262
             ||||||||||||||||||||
Sbjct: 96885 caagcaatcatcttgccttt 96904
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>dbj|BS000614.1| Pan troglodytes chromosome Y clone:PTBY-009K01, complete sequences
          Length = 63466

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 157   caaggaaaacgaagactcaaaaaa 180
             |||||||||| |||||||||||||
Sbjct: 39928 caaggaaaacaaagactcaaaaaa 39905
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>dbj|BS000556.1| Pan troglodytes chromosome Y clone:PTB-461C11, complete sequences
          Length = 148964

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 157    caaggaaaacgaagactcaaaaaa 180
              |||||||||| |||||||||||||
Sbjct: 134564 caaggaaaacaaagactcaaaaaa 134541
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 157      caaggaaaacgaagactcaaaaaa 180
                |||||||||| |||||||||||||
Sbjct: 23749871 caaggaaaacaaagactcaaaaaa 23749894
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>ref|NM_001019329.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC6F6.06c),
            partial mRNA
          Length = 3468

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 107  ttgcctaccattattgacagcttt 130
            ||||||||| ||||||||||||||
Sbjct: 3171 ttgcctacccttattgacagcttt 3194
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>gb|AC153895.5| Mus musculus 6 BAC RP23-114F22 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 187298

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    cctttgcagactgtaaacat 277
              ||||||||||||||||||||
Sbjct: 141924 cctttgcagactgtaaacat 141905
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>gb|AC008537.5|AC008537 Homo sapiens chromosome 19 clone CTC-490E21, complete sequence
          Length = 169089

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   caagcaatcatcttgcctttgcag 266
             |||||||| |||||||||||||||
Sbjct: 88135 caagcaattatcttgcctttgcag 88112
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>gb|AC006040.3|AC006040 Homo sapiens BAC clone RP11-400O10 from Y, complete sequence
          Length = 186504

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 157    caaggaaaacgaagactcaaaaaa 180
              |||||||||| |||||||||||||
Sbjct: 121897 caaggaaaacaaagactcaaaaaa 121874
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>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete
              sequence
          Length = 640681

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     taaaattattggccgaaaga 33
              ||||||||||||||||||||
Sbjct: 430608 taaaattattggccgaaaga 430627
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>gb|AC153618.4| Mus musculus 6 BAC RP23-5O1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 204946

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    cctttgcagactgtaaacat 277
              ||||||||||||||||||||
Sbjct: 185664 cctttgcagactgtaaacat 185683
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>emb|CR456625.13| Zebrafish DNA sequence from clone DKEY-76G24 in linkage group 12,
             complete sequence
          Length = 228447

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    tgacaattcatcatcatcat 88
             ||||||||||||||||||||
Sbjct: 65825 tgacaattcatcatcatcat 65844
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>gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19 of 118 of the complete
              sequence
          Length = 306650

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      taagcttcattaaaattatt 23
              ||||||||||||||||||||
Sbjct: 290880 taagcttcattaaaattatt 290861
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>gb|AF041427.1|AF041427 Homo sapiens ribosomal protein s4 Y isoform gene, complete cds
          Length = 45859

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 157   caaggaaaacgaagactcaaaaaa 180
             |||||||||| |||||||||||||
Sbjct: 24173 caaggaaaacaaagactcaaaaaa 24150


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,348,988
Number of Sequences: 3902068
Number of extensions: 3348988
Number of successful extensions: 74138
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74007
Number of HSP's gapped (non-prelim): 129
length of query: 285
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 263
effective length of database: 17,147,199,772
effective search space: 4509713540036
effective search space used: 4509713540036
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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