ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THII_STAES (Q8CNW7) Probable thiamine biosynthesis protein thiI 29 3.0
2THII_STAEQ (Q5HNJ0) Probable thiamine biosynthesis protein thiI 29 3.0
3YDC1_YEAST (Q02896) Alkaline ceramidase YDC1 (EC 3.5.1.-) 28 8.9

>THII_STAES (Q8CNW7) Probable thiamine biosynthesis protein thiI|
          Length = 407

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   ENNTL*KQERVPDKRIKIKIQMPARHIIQITIYNSGKIP 118
           ENN +    + PD  IKI+++M A +I +  I  +G +P
Sbjct: 135 ENNNITVNVKNPDYEIKIEVRMDAIYIYEKVIAGAGGLP 173



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>THII_STAEQ (Q5HNJ0) Probable thiamine biosynthesis protein thiI|
          Length = 407

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   ENNTL*KQERVPDKRIKIKIQMPARHIIQITIYNSGKIP 118
           ENN +    + PD  IKI+++M A +I +  I  +G +P
Sbjct: 135 ENNNITVNVKNPDYEIKIEVRMDAIYIYEKVIAGAGGLP 173



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>YDC1_YEAST (Q02896) Alkaline ceramidase YDC1 (EC 3.5.1.-)|
          Length = 317

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 157 FGTMHNGPVPFCLGYLAGVIDCYLDYVPCWHLDLNLNSF 41
           F TM  G +PF +G++            CW LD++L SF
Sbjct: 195 FITMVMGMIPFVIGFI------------CWQLDIHLCSF 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,190,961
Number of Sequences: 219361
Number of extensions: 412195
Number of successful extensions: 1049
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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