ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC025483.7| Homo sapiens chromosome 15, clone RP11-398I10, co... 42 0.53
2gb|AC090083.3| Homo sapiens chromosome 15, clone CTD-2311K11, co... 42 0.53
3ref|NM_180473.1| Arabidopsis thaliana unknown protein AT5G10710 ... 40 2.1
4ref|NM_121109.2| Arabidopsis thaliana unknown protein AT5G10710 ... 40 2.1
5gb|AF360281.1| Arabidopsis thaliana unknown protein (At5g10710) ... 40 2.1
6gb|AC164004.3| Mus musculus chromosome 5, clone RP23-58C20, comp... 40 2.1
7gb|AC026427.4| Homo sapiens chromosome 5 clone CTD-2193P3, compl... 40 2.1
8gb|AC020901.8|AC020901 Homo sapiens chromosome 5 clone CTC-527N1... 40 2.1
9emb|BX830763.1|CNS09ZHR Arabidopsis thaliana Full-length cDNA Co... 40 2.1
10gb|BT002314.1| Arabidopsis thaliana clone C104667 unknown protei... 40 2.1
11emb|BX842684.4| Zebrafish DNA sequence from clone DKEY-33I22 in ... 40 2.1
12gb|AC102476.14| Mus musculus chromosome 5, clone RP24-396L12, co... 40 2.1
13gb|AC118017.15| Mus musculus chromosome 7, clone RP23-457C1, com... 38 8.3
14gb|AC122407.4| Mus musculus BAC clone RP24-129G24 from chromosom... 38 8.3
15gb|AC004946.1| Homo sapiens PAC clone RP5-1006K12 from 7, comple... 38 8.3
16gb|AC147471.14| Medicago truncatula clone mth2-7a7, complete seq... 38 8.3
17emb|AL121880.21|HSJ1174H9 Human DNA sequence from clone RP5-1174... 38 8.3
18gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome... 38 8.3
19emb|BX510922.8| Zebrafish DNA sequence from clone DKEY-50I6 in l... 38 8.3
20gb|AC146755.23| Medicago truncatula clone mth2-15i15, complete s... 38 8.3
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.3
22gb|AC017080.8| Homo sapiens BAC clone RP11-469G4 from 2, complet... 38 8.3
23gb|AC114776.3| Homo sapiens BAC clone RP11-480O8 from 2, complet... 38 8.3
24gb|AC132394.3| Mus musculus BAC clone RP23-391F16 from chromosom... 38 8.3
25dbj|AP001148.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 8.3
26gb|AE016830.1| Enterococcus faecalis V583, complete genome 38 8.3
27emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on ch... 38 8.3
28gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 8.3
29emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb... 38 8.3

>gb|AC025483.7| Homo sapiens chromosome 15, clone RP11-398I10, complete sequence
          Length = 180096

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 18     aaaaacaagaaagggtgccag 38
              |||||||||||||||||||||
Sbjct: 174337 aaaaacaagaaagggtgccag 174317



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>gb|AC090083.3| Homo sapiens chromosome 15, clone CTD-2311K11, complete sequence
          Length = 96253

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    aaaaacaagaaagggtgccag 38
             |||||||||||||||||||||
Sbjct: 25958 aaaaacaagaaagggtgccag 25938



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>ref|NM_180473.1| Arabidopsis thaliana unknown protein AT5G10710 transcript variant
           AT5G10710.2 mRNA, complete cds
          Length = 1170

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 gacagaaaggaacaggtccg 140
           ||||||||||||||||||||
Sbjct: 677 gacagaaaggaacaggtccg 696



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>ref|NM_121109.2| Arabidopsis thaliana unknown protein AT5G10710 transcript variant
           AT5G10710.1 mRNA, complete cds
          Length = 1270

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 gacagaaaggaacaggtccg 140
           ||||||||||||||||||||
Sbjct: 777 gacagaaaggaacaggtccg 796



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>gb|AF360281.1| Arabidopsis thaliana unknown protein (At5g10710) mRNA, complete cds
          Length = 1285

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 gacagaaaggaacaggtccg 140
           ||||||||||||||||||||
Sbjct: 776 gacagaaaggaacaggtccg 795



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>gb|AC164004.3| Mus musculus chromosome 5, clone RP23-58C20, complete sequence
          Length = 198872

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    aagacagaaaggaacaggtc 138
              ||||||||||||||||||||
Sbjct: 112990 aagacagaaaggaacaggtc 112971



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>gb|AC026427.4| Homo sapiens chromosome 5 clone CTD-2193P3, complete sequence
          Length = 175838

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   caagatacccaagacagaaa 128
             ||||||||||||||||||||
Sbjct: 53284 caagatacccaagacagaaa 53303



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>gb|AC020901.8|AC020901 Homo sapiens chromosome 5 clone CTC-527N11, complete sequence
          Length = 180636

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    caagatacccaagacagaaa 128
              ||||||||||||||||||||
Sbjct: 161539 caagatacccaagacagaaa 161558



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>emb|BX830763.1|CNS09ZHR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS20ZF05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1195

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 gacagaaaggaacaggtccg 140
           ||||||||||||||||||||
Sbjct: 734 gacagaaaggaacaggtccg 753



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>gb|BT002314.1| Arabidopsis thaliana clone C104667 unknown protein (At5g10710)
           mRNA, complete cds
          Length = 970

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 gacagaaaggaacaggtccg 140
           ||||||||||||||||||||
Sbjct: 577 gacagaaaggaacaggtccg 596



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>emb|BX842684.4| Zebrafish DNA sequence from clone DKEY-33I22 in linkage group 20,
             complete sequence
          Length = 140982

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 15    tttaaaaacaagaaagggtgccagacaa 42
             |||||||| |||||||||||| ||||||
Sbjct: 51770 tttaaaaagaagaaagggtgcaagacaa 51743



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>gb|AC102476.14| Mus musculus chromosome 5, clone RP24-396L12, complete sequence
          Length = 181047

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    aagacagaaaggaacaggtc 138
              ||||||||||||||||||||
Sbjct: 168314 aagacagaaaggaacaggtc 168333



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>gb|AC118017.15| Mus musculus chromosome 7, clone RP23-457C1, complete sequence
          Length = 196427

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 13    gctttaaaaacaagaaagggtgc 35
             ||||||||||||| |||||||||
Sbjct: 23257 gctttaaaaacaacaaagggtgc 23235



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>gb|AC122407.4| Mus musculus BAC clone RP24-129G24 from chromosome 12, complete
             sequence
          Length = 137860

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    aaaaacaagaaagggtgcc 36
             |||||||||||||||||||
Sbjct: 96112 aaaaacaagaaagggtgcc 96130



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>gb|AC004946.1| Homo sapiens PAC clone RP5-1006K12 from 7, complete sequence
          Length = 107102

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 55    taagatccaaatgccagca 73
             |||||||||||||||||||
Sbjct: 24507 taagatccaaatgccagca 24525



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>gb|AC147471.14| Medicago truncatula clone mth2-7a7, complete sequence
          Length = 139792

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    acataatccaaataacaat 96
             |||||||||||||||||||
Sbjct: 92255 acataatccaaataacaat 92273



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>emb|AL121880.21|HSJ1174H9 Human DNA sequence from clone RP5-1174H9 on chromosome X, complete
             sequence
          Length = 87065

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 110   aagatacccaagacagaaa 128
             |||||||||||||||||||
Sbjct: 55028 aagatacccaagacagaaa 55046



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>gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome 12, complete
           sequence
          Length = 210186

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 14  ctttaaaaacaagaaaggg 32
           |||||||||||||||||||
Sbjct: 114 ctttaaaaacaagaaaggg 96



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>emb|BX510922.8| Zebrafish DNA sequence from clone DKEY-50I6 in linkage group 21,
             complete sequence
          Length = 87532

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     aaataatacgctttaaaaa 22
             |||||||||||||||||||
Sbjct: 41433 aaataatacgctttaaaaa 41415



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>gb|AC146755.23| Medicago truncatula clone mth2-15i15, complete sequence
          Length = 108159

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      aataatacgctttaaaaac 23
              |||||||||||||||||||
Sbjct: 107507 aataatacgctttaaaaac 107489



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 76       gcacataatccaaataaca 94
                |||||||||||||||||||
Sbjct: 23172979 gcacataatccaaataaca 23172961



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>gb|AC017080.8| Homo sapiens BAC clone RP11-469G4 from 2, complete sequence
          Length = 184012

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 117    ccaagacagaaaggaacag 135
              |||||||||||||||||||
Sbjct: 126107 ccaagacagaaaggaacag 126089



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>gb|AC114776.3| Homo sapiens BAC clone RP11-480O8 from 2, complete sequence
          Length = 169190

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 78     acataatccaaataacaat 96
              |||||||||||||||||||
Sbjct: 133080 acataatccaaataacaat 133062



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>gb|AC132394.3| Mus musculus BAC clone RP23-391F16 from chromosome 6, complete sequence
          Length = 197171

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    acaagaaagggtgccagac 40
             |||||||||||||||||||
Sbjct: 51827 acaagaaagggtgccagac 51845



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>dbj|AP001148.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-762L8, complete
              sequences
          Length = 169340

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 119    aagacagaaaggaacaggt 137
              |||||||||||||||||||
Sbjct: 119607 aagacagaaaggaacaggt 119589



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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 3       aaaataatacgctttaaaaacaagaaa 29
               ||||||||||||||| |||| ||||||
Sbjct: 1917663 aaaataatacgctttcaaaaaaagaaa 1917689



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>emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on chromosome 12, complete
             sequence
          Length = 205515

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 14    ctttaaaaacaagaaaggg 32
             |||||||||||||||||||
Sbjct: 82331 ctttaaaaacaagaaaggg 82313



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 76       gcacataatccaaataaca 94
                |||||||||||||||||||
Sbjct: 23101170 gcacataatccaaataaca 23101152



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>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 135323

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 76   gcacataatccaaataaca 94
            |||||||||||||||||||
Sbjct: 5418 gcacataatccaaataaca 5436


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,832,528
Number of Sequences: 3902068
Number of extensions: 1832528
Number of successful extensions: 123893
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123717
Number of HSP's gapped (non-prelim): 176
length of query: 170
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 148
effective length of database: 17,147,199,772
effective search space: 2537785566256
effective search space used: 2537785566256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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