ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLVAP_MOUSE (Q91VC4) Plasmalemma vesicle-associated protein (Pla... 28 4.7
23CL_HUMAN (Q13412) Pre-T/NK cell-associated protein 3Cl 28 7.9
3REL1_MOUSE (P47932) Prorelaxin 1 precursor [Contains: Relaxin B ... 28 7.9

>PLVAP_MOUSE (Q91VC4) Plasmalemma vesicle-associated protein (Plasmalemma|
           vesicle protein 1) (PV-1) (MECA-32 antigen)
          Length = 438

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 113 DQQEGCVYFFSSLILWQTIIYVTDYYGVIYFILY 12
           DQQ GC Y+     L+ ++I      G++ F++Y
Sbjct: 15  DQQRGCWYYLRYFFLFVSLIQFLIILGLVLFMIY 48



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>3CL_HUMAN (Q13412) Pre-T/NK cell-associated protein 3Cl|
          Length = 51

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 267 IASWLGYLSL*WMRSSWHCRSRVS 196
           I SWL YLS   + +SW+C+ ++S
Sbjct: 28  IRSWLTYLSWGLLCTSWYCKVKMS 51



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>REL1_MOUSE (P47932) Prorelaxin 1 precursor [Contains: Relaxin B chain; Relaxin|
           A chain]
          Length = 185

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 273 RLIASWLGYLSL*WMRSSWHCRSRVSLGWPD--LALCRRDY 157
           R +   LG+    W+  S  CR+RVS  W D  + +C R+Y
Sbjct: 4   RFLLQLLGF----WLLLSQPCRTRVSEEWMDGFIRMCGREY 40


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,223,164
Number of Sequences: 219361
Number of extensions: 524005
Number of successful extensions: 1021
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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