ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC110233.9| Mus musculus chromosome 6, clone RP23-68H1, compl... 46 0.058
2emb|BX470100.6| Zebrafish DNA sequence from clone DKEY-239K7 in ... 46 0.058
3gb|AC110777.3| Homo sapiens BAC clone RP11-311C22 from 4, comple... 44 0.23
4ref|XM_639055.1| Dictyostelium discoideum hypothetical protein (... 42 0.91
5gb|AF097649.1| Homo sapiens chromosome 7qtelo BAC E5, complete s... 42 0.91
6gb|AE014852.2| Plasmodium falciparum 3D7 chromosome 12, section ... 42 0.91
7gb|AC104866.10| Mus musculus chromosome 17, clone RP23-268C14, c... 42 0.91
8emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 0.91
9gb|AC110778.4| Homo sapiens BAC clone RP11-320L7 from 4, complet... 42 0.91
10gb|AC092182.9| Homo sapiens 12p BAC RP11-174D5 (Roswell Park Can... 42 0.91
11gb|AC011709.11| Homo sapiens chromosome 18, clone RP11-500H12, c... 42 0.91
12gb|AC012593.8| Homo sapiens BAC clone RP11-511B24 from 2, comple... 42 0.91
13gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067... 42 0.91
14emb|CR931784.7| Zebrafish DNA sequence from clone DKEY-237H12 in... 42 0.91
15gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6... 40 3.6
16gb|AC119875.7| Mus musculus chromosome 1, clone RP24-291C20, com... 40 3.6
17emb|CT030463.1| Xenopus tropicalis finished cDNA, clone TGas114i23 40 3.6
18gb|AC110554.10| Mus musculus chromosome 8, clone RP23-249H16, co... 40 3.6
19gb|AC146585.18| Medicago truncatula clone mth2-68o3, complete se... 40 3.6
20emb|AL590814.5| Human DNA sequence from clone RP11-173O8 on chro... 40 3.6
21emb|AL451127.6| Human DNA sequence from clone RP11-128I7 on chro... 40 3.6
22gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 3.6
23emb|AL023883.6|HS404K8 Human DNA sequence from clone RP3-404K8 o... 40 3.6
24gb|AC023706.4| Drosophila melanogaster X BAC RP98-4D11 (Roswell ... 40 3.6
25gb|AC023698.4| Drosophila melanogaster X BAC RP98-17C9 (Roswell ... 40 3.6
26gb|AC092888.4| Homo sapiens 12 BAC RP11-597C7 (Roswell Park Canc... 40 3.6
27gb|AC022106.5| Homo sapiens chromosome 5 clone CTC-311G1, comple... 40 3.6
28gb|AC156988.6| Mus musculus chromosome 1, clone RP23-362H15, com... 40 3.6
29gb|AC159279.2| Mus musculus BAC clone RP23-342D8 from chromosome... 40 3.6
30gb|AC067940.5| Homo sapiens BAC clone RP11-818E9 from 2, complet... 40 3.6
31gb|AC007376.9|AC007376 Homo sapiens chromosome 14 clone 99E15 co... 40 3.6
32gb|AC079990.2| Rattus norvegicus strain Brown Norway chromosome ... 40 3.6
33emb|BX248318.9| Zebrafish DNA sequence from clone CH211-220M17 i... 40 3.6
34emb|BX005383.8| Zebrafish DNA sequence from clone DKEYP-19E1 in ... 40 3.6
35emb|BX649470.3| Mouse DNA sequence from clone RP23-112A2 on chro... 40 3.6
36emb|BX908791.12| Zebrafish DNA sequence from clone DKEY-261H15 i... 40 3.6
37gb|AE003439.3| Drosophila melanogaster chromosome X, section 23 ... 40 3.6
38dbj|AP000848.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.6
39gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 3.6 
>gb|AC110233.9| Mus musculus chromosome 6, clone RP23-68H1, complete sequence
          Length = 151295

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 9     caaatataatatgaaataaataa 31
             |||||||||||||||||||||||
Sbjct: 34964 caaatataatatgaaataaataa 34986
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>emb|BX470100.6| Zebrafish DNA sequence from clone DKEY-239K7 in linkage group 18,
             complete sequence
          Length = 117304

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 11    aatataatatgaaataaataact 33
             |||||||||||||||||||||||
Sbjct: 21369 aatataatatgaaataaataact 21391
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>gb|AC110777.3| Homo sapiens BAC clone RP11-311C22 from 4, complete sequence
          Length = 166922

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 5      caggcaaatataatatgaaataaata 30
              ||||||||||||| ||||||||||||
Sbjct: 120233 caggcaaatataaaatgaaataaata 120258
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>ref|XM_639055.1| Dictyostelium discoideum hypothetical protein (DDB0217546), partial
            mRNA
          Length = 18186

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 9    caaatataatatgaaataaat 29
            |||||||||||||||||||||
Sbjct: 1903 caaatataatatgaaataaat 1883
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>gb|AF097649.1| Homo sapiens chromosome 7qtelo BAC E5, complete sequence
          Length = 51858

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 13  tataatatgaaataaataact 33
           |||||||||||||||||||||
Sbjct: 599 tataatatgaaataaataact 579
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>gb|AE014852.2| Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete
             sequence
          Length = 260929

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    aaatataatatgaaataaata 30
             |||||||||||||||||||||
Sbjct: 97744 aaatataatatgaaataaata 97724
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>gb|AC104866.10| Mus musculus chromosome 17, clone RP23-268C14, complete sequence
          Length = 176240

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     ataatatgaaataaataactc 34
              |||||||||||||||||||||
Sbjct: 107241 ataatatgaaataaataactc 107261
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>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     aatatgaaataaataactcca 36
              |||||||||||||||||||||
Sbjct: 582996 aatatgaaataaataactcca 583016
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>gb|AC110778.4| Homo sapiens BAC clone RP11-320L7 from 4, complete sequence
          Length = 98569

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    tataatatgaaataaataact 33
             |||||||||||||||||||||
Sbjct: 34974 tataatatgaaataaataact 34954
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>gb|AC092182.9| Homo sapiens 12p BAC RP11-174D5 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 81483

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 138   tgatcagagaacagaatatataatc 162
             |||||||||||||||||||| ||||
Sbjct: 34520 tgatcagagaacagaatatagaatc 34544
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>gb|AC011709.11| Homo sapiens chromosome 18, clone RP11-500H12, complete sequence
          Length = 193321

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 13     tataatatgaaataaataact 33
              |||||||||||||||||||||
Sbjct: 141393 tataatatgaaataaataact 141373
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>gb|AC012593.8| Homo sapiens BAC clone RP11-511B24 from 2, complete sequence
          Length = 166074

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 11    aatataatatgaaataaataa 31
             |||||||||||||||||||||
Sbjct: 34106 aatataatatgaaataaataa 34126
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>gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4,
              complete sequence
          Length = 405682

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 9      caaatataatatgaaataaat 29
              |||||||||||||||||||||
Sbjct: 184477 caaatataatatgaaataaat 184457
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>emb|CR931784.7| Zebrafish DNA sequence from clone DKEY-237H12 in linkage group 14,
              complete sequence
          Length = 223042

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     aatataatatgaaataaataa 31
              |||||||||||||||||||||
Sbjct: 184205 aatataatatgaaataaataa 184185



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     aatataatatgaaataaata 30
              ||||||||||||||||||||
Sbjct: 184063 aatataatatgaaataaata 184044
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>gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete
              sequence
          Length = 253001

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     aaatataatatgaaataaat 29
              ||||||||||||||||||||
Sbjct: 248054 aaatataatatgaaataaat 248035
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>gb|AC119875.7| Mus musculus chromosome 1, clone RP24-291C20, complete sequence
          Length = 162379

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    tgatcagagaacagaatata 157
              ||||||||||||||||||||
Sbjct: 112397 tgatcagagaacagaatata 112416
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>emb|CT030463.1| Xenopus tropicalis finished cDNA, clone TGas114i23
          Length = 4403

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   aataactccataataatctg 46
            ||||||||||||||||||||
Sbjct: 3969 aataactccataataatctg 3950
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>gb|AC110554.10| Mus musculus chromosome 8, clone RP23-249H16, complete sequence
          Length = 170361

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ataatatgaaataaataact 33
             ||||||||||||||||||||
Sbjct: 53800 ataatatgaaataaataact 53781
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>gb|AC146585.18| Medicago truncatula clone mth2-68o3, complete sequence
          Length = 124526

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     aatataatatgaaataaata 30
              ||||||||||||||||||||
Sbjct: 108773 aatataatatgaaataaata 108754
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>emb|AL590814.5| Human DNA sequence from clone RP11-173O8 on chromosome 6 Contains a
             ribosomal protein L5 (RPL5) pseudogene, complete sequence
          Length = 162540

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   gatcagagaacagaatatat 158
             ||||||||||||||||||||
Sbjct: 90639 gatcagagaacagaatatat 90620
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>emb|AL451127.6| Human DNA sequence from clone RP11-128I7 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 108958

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    acagtatcaaagaactgaaa 87
             ||||||||||||||||||||
Sbjct: 23894 acagtatcaaagaactgaaa 23913
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    acgacaatgccacgacgatc 227
              ||||||||||||||||||||
Sbjct: 478353 acgacaatgccacgacgatc 478334
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>emb|AL023883.6|HS404K8 Human DNA sequence from clone RP3-404K8 on chromosome 6p22.2-22.3
             Contains the PRL gene for prolactin, complete sequence
          Length = 151236

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    acagtatcaaagaactgaaa 87
             ||||||||||||||||||||
Sbjct: 16770 acagtatcaaagaactgaaa 16789
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>gb|AC023706.4| Drosophila melanogaster X BAC RP98-4D11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 172854

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     aaatataatatgaaataaataact 33
              ||||||||||||||||||| ||||
Sbjct: 162150 aaatataatatgaaataaaaaact 162127
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>gb|AC023698.4| Drosophila melanogaster X BAC RP98-17C9 (Roswell Park Cancer
           Institute Drosophila BAC Library) complete sequence
          Length = 160023

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 10  aaatataatatgaaataaataact 33
           ||||||||||||||||||| ||||
Sbjct: 460 aaatataatatgaaataaaaaact 437
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>gb|AC092888.4| Homo sapiens 12 BAC RP11-597C7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 169071

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    acagtatcaaagaactgaaa 87
             ||||||||||||||||||||
Sbjct: 79096 acagtatcaaagaactgaaa 79115
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>gb|AC022106.5| Homo sapiens chromosome 5 clone CTC-311G1, complete sequence
          Length = 149790

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     caaatataatatgaaataaa 28
             ||||||||||||||||||||
Sbjct: 69068 caaatataatatgaaataaa 69087
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>gb|AC156988.6| Mus musculus chromosome 1, clone RP23-362H15, complete sequence
          Length = 148819

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    tgatcagagaacagaatata 157
              ||||||||||||||||||||
Sbjct: 115417 tgatcagagaacagaatata 115398
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>gb|AC159279.2| Mus musculus BAC clone RP23-342D8 from chromosome 12, complete sequence
          Length = 206464

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     tcaaagaactgaaaaaatat 93
              ||||||||||||||||||||
Sbjct: 173196 tcaaagaactgaaaaaatat 173177
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>gb|AC067940.5| Homo sapiens BAC clone RP11-818E9 from 2, complete sequence
          Length = 148267

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    aatataatatgaaataaata 30
             ||||||||||||||||||||
Sbjct: 17094 aatataatatgaaataaata 17113
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>gb|AC007376.9|AC007376 Homo sapiens chromosome 14 clone 99E15 containing gene for KIAA 1036,
              complete CDS, complete sequence
          Length = 186330

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     acagtatcaaagaactgaaa 87
              ||||||||||||||||||||
Sbjct: 130735 acagtatcaaagaactgaaa 130716
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>gb|AC079990.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-327J16,
             complete sequence
          Length = 116793

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    aactgaaaaaatatacacaa 99
             ||||||||||||||||||||
Sbjct: 88925 aactgaaaaaatatacacaa 88944
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>emb|BX248318.9| Zebrafish DNA sequence from clone CH211-220M17 in linkage group 11,
              complete sequence
          Length = 194209

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     caaagaactgaaaaaatata 94
              ||||||||||||||||||||
Sbjct: 155104 caaagaactgaaaaaatata 155085
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>emb|BX005383.8| Zebrafish DNA sequence from clone DKEYP-19E1 in linkage group 25,
              complete sequence
          Length = 142728

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      caaatataatatgaaataaa 28
              ||||||||||||||||||||
Sbjct: 119051 caaatataatatgaaataaa 119070
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>emb|BX649470.3| Mouse DNA sequence from clone RP23-112A2 on chromosome 4, complete
             sequence
          Length = 41050

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     gcaaatataatatgaaataa 27
             ||||||||||||||||||||
Sbjct: 23428 gcaaatataatatgaaataa 23409
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>emb|BX908791.12| Zebrafish DNA sequence from clone DKEY-261H15 in linkage group 18,
            complete sequence
          Length = 66694

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 40   taatctgttacatatataatggtc 63
            |||||||||| |||||||||||||
Sbjct: 4932 taatctgttatatatataatggtc 4955
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>gb|AE003439.3| Drosophila melanogaster chromosome X, section 23 of 74 of the complete
              sequence
          Length = 331952

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     aaatataatatgaaataaataact 33
              ||||||||||||||||||| ||||
Sbjct: 134122 aaatataatatgaaataaaaaact 134099
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>dbj|AP000848.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-775D16, complete
             sequence
          Length = 186965

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aaatataatatgaaataaat 29
             ||||||||||||||||||||
Sbjct: 64387 aaatataatatgaaataaat 64368
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 22      aaataaataactccataata 41
               ||||||||||||||||||||
Sbjct: 1235089 aaataaataactccataata 1235070


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,106,943
Number of Sequences: 3902068
Number of extensions: 3106943
Number of successful extensions: 69100
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69006
Number of HSP's gapped (non-prelim): 94
length of query: 276
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 254
effective length of database: 17,147,199,772
effective search space: 4355388742088
effective search space used: 4355388742088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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