ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) ... 196 2e-47
2gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) ... 182 3e-43
3gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, p... 182 3e-43
4gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, c... 182 3e-43
5gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) ... 178 4e-42
6gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, p... 178 4e-42
7emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chr... 42 0.66

>gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) mRNA, complete cds
          Length = 869

 Score =  196 bits (99), Expect = 2e-47
 Identities = 142/154 (92%), Gaps = 3/154 (1%)
 Strand = Plus / Minus

                                                                       
Query: 44  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 103
           |||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 780 ggaagataaccaaggccgccggacgcagatccagcggcccaaagagtccacctaaaaccc 721

                                                                       
Query: 104 tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacg--acacgact- 160
           |||||||||||||||||||||||||||||||||||  ||| ||||||||  |||||||| 
Sbjct: 720 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacacgactc 661

                                             
Query: 161 tcttatttagaccgacgacacgacaggggacaca 194
           ||||||||||| ||||||||||||| ||||||||
Sbjct: 660 tcttatttagatcgacgacacgacacgggacaca 627



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>gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) mRNA, complete cds
          Length = 845

 Score =  182 bits (92), Expect = 3e-43
 Identities = 110/116 (94%)
 Strand = Plus / Minus

                                                                       
Query: 44  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 103
           |||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 776 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 717

                                                                   
Query: 104 tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 159
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 716 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 661



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>gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, partial cds
          Length = 494

 Score =  182 bits (92), Expect = 3e-43
 Identities = 135/147 (91%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                       
Query: 51  aaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccctcctaaa 110
           ||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 494 aaccaaggccgccggacgcagatccagcggcccaaagagtccacctaaaaccctcctaaa 435

                                                                       
Query: 111 ccaaccacggagatctcatcggacggacaggggcaagacacg--acacgact-tcttatt 167
           ||||||||||||||||||||||||||||  ||| ||||||||  |||||||| |||||||
Sbjct: 434 ccaaccacggagatctcatcggacggaccaggggaagacacgacacacgactctcttatt 375

                                      
Query: 168 tagaccgacgacacgacaggggacaca 194
           |||| ||||||||||||| ||||||||
Sbjct: 374 tagatcgacgacacgacacgggacaca 348



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>gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, complete cds
          Length = 781

 Score =  182 bits (92), Expect = 3e-43
 Identities = 110/116 (94%)
 Strand = Plus / Minus

                                                                       
Query: 44  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 103
           |||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 740 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 681

                                                                   
Query: 104 tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 159
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 680 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 625



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>gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) mRNA, complete cds
          Length = 859

 Score =  178 bits (90), Expect = 4e-42
 Identities = 141/159 (88%), Gaps = 8/159 (5%)
 Strand = Plus / Minus

                                                                       
Query: 44  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 103
           |||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct: 784 ggaagataaccaaggcggccggacagagatccagcagcccaaagagtccacctaaaaccc 725

                                                                       
Query: 104 tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac---- 159
           |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
Sbjct: 724 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacgacacac 665

                                                  
Query: 160 ----ttcttatttagaccgacgacacgacaggggacaca 194
                ||||||||||| ||||||||||||| ||||||||
Sbjct: 664 gactctcttatttagatcgacgacacgacacgggacaca 626



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>gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, partial cds
          Length = 519

 Score =  178 bits (90), Expect = 4e-42
 Identities = 141/159 (88%), Gaps = 8/159 (5%)
 Strand = Plus / Minus

                                                                       
Query: 44  ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 103
           |||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct: 514 ggaagataaccaaggcggccggacagagatccagcagcccaaagagtccacctaaaaccc 455

                                                                       
Query: 104 tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac---- 159
           |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
Sbjct: 454 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacgacacac 395

                                                  
Query: 160 ----ttcttatttagaccgacgacacgacaggggacaca 194
                ||||||||||| ||||||||||||| ||||||||
Sbjct: 394 gactctcttatttagatcgacgacacgacacgggacaca 356



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>emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chromosome 13, complete
             sequence
          Length = 183340

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 90    tccacctaaaaccctcctaaaccaaccac 118
             ||||||| ||||| |||||||||||||||
Sbjct: 53760 tccacctgaaaccatcctaaaccaaccac 53732


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,401,496
Number of Sequences: 3902068
Number of extensions: 1401496
Number of successful extensions: 83547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83528
Number of HSP's gapped (non-prelim): 17
length of query: 207
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 185
effective length of database: 17,147,199,772
effective search space: 3172231957820
effective search space used: 3172231957820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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