| Clone Name | rbaet60e11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) mRNA, complete cds Length = 869 Score = 196 bits (99), Expect = 2e-47 Identities = 142/154 (92%), Gaps = 3/154 (1%) Strand = Plus / Minus Query: 44 ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 103 |||||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||| Sbjct: 780 ggaagataaccaaggccgccggacgcagatccagcggcccaaagagtccacctaaaaccc 721 Query: 104 tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacg--acacgact- 160 ||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| Sbjct: 720 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacacgactc 661 Query: 161 tcttatttagaccgacgacacgacaggggacaca 194 ||||||||||| ||||||||||||| |||||||| Sbjct: 660 tcttatttagatcgacgacacgacacgggacaca 627
>gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) mRNA, complete cds Length = 845 Score = 182 bits (92), Expect = 3e-43 Identities = 110/116 (94%) Strand = Plus / Minus Query: 44 ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 103 |||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||||||| Sbjct: 776 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 717 Query: 104 tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 159 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 716 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 661
>gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, partial cds Length = 494 Score = 182 bits (92), Expect = 3e-43 Identities = 135/147 (91%), Gaps = 3/147 (2%) Strand = Plus / Minus Query: 51 aaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccctcctaaa 110 ||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct: 494 aaccaaggccgccggacgcagatccagcggcccaaagagtccacctaaaaccctcctaaa 435 Query: 111 ccaaccacggagatctcatcggacggacaggggcaagacacg--acacgact-tcttatt 167 |||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||| Sbjct: 434 ccaaccacggagatctcatcggacggaccaggggaagacacgacacacgactctcttatt 375 Query: 168 tagaccgacgacacgacaggggacaca 194 |||| ||||||||||||| |||||||| Sbjct: 374 tagatcgacgacacgacacgggacaca 348
>gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, complete cds Length = 781 Score = 182 bits (92), Expect = 3e-43 Identities = 110/116 (94%) Strand = Plus / Minus Query: 44 ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 103 |||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||||||| Sbjct: 740 ggaagataaccatggccgccggacacagatccagcggccaaaagagtccacctaaaaccc 681 Query: 104 tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac 159 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 680 tcctaaaccaaccacggagatctcatcggacggacaaggggaagacacgacacgac 625
>gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) mRNA, complete cds Length = 859 Score = 178 bits (90), Expect = 4e-42 Identities = 141/159 (88%), Gaps = 8/159 (5%) Strand = Plus / Minus Query: 44 ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 103 |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 784 ggaagataaccaaggcggccggacagagatccagcagcccaaagagtccacctaaaaccc 725 Query: 104 tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac---- 159 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 724 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacgacacac 665 Query: 160 ----ttcttatttagaccgacgacacgacaggggacaca 194 ||||||||||| ||||||||||||| |||||||| Sbjct: 664 gactctcttatttagatcgacgacacgacacgggacaca 626
>gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, partial cds Length = 519 Score = 178 bits (90), Expect = 4e-42 Identities = 141/159 (88%), Gaps = 8/159 (5%) Strand = Plus / Minus Query: 44 ggaagataaccatggcggccggacgcagatccagcagcctaaagagtccacctaaaaccc 103 |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 514 ggaagataaccaaggcggccggacagagatccagcagcccaaagagtccacctaaaaccc 455 Query: 104 tcctaaaccaaccacggagatctcatcggacggacaggggcaagacacgacacgac---- 159 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 454 tcctaaaccaaccacggagatctcatcggacggaccaggggaagacacgacacgacacac 395 Query: 160 ----ttcttatttagaccgacgacacgacaggggacaca 194 ||||||||||| ||||||||||||| |||||||| Sbjct: 394 gactctcttatttagatcgacgacacgacacgggacaca 356
>emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chromosome 13, complete sequence Length = 183340 Score = 42.1 bits (21), Expect = 0.66 Identities = 27/29 (93%) Strand = Plus / Minus Query: 90 tccacctaaaaccctcctaaaccaaccac 118 ||||||| ||||| ||||||||||||||| Sbjct: 53760 tccacctgaaaccatcctaaaccaaccac 53732 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,401,496 Number of Sequences: 3902068 Number of extensions: 1401496 Number of successful extensions: 83547 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83528 Number of HSP's gapped (non-prelim): 17 length of query: 207 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 185 effective length of database: 17,147,199,772 effective search space: 3172231957820 effective search space used: 3172231957820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)