ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransgly... 377 e-102
2gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047... 42 0.62
3emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chr... 40 2.4
4emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in ... 40 2.4
5gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 2.4
6emb|X55703.1|BCTRPED B.caldotenax trpE and 5'region of trpD gene... 38 9.6
7gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence 38 9.6
8emb|AL009147.1|DMC171D11 Drosophila melanogaster cosmid clone 17... 38 9.6
9gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Canc... 38 9.6
10gb|AC084083.10| Homo sapiens chromosome 8, clone RP11-550A5, com... 38 9.6
11gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell P... 38 9.6
12gb|AC114402.2| Homo sapiens chromosome 1 clone RP11-397P13, comp... 38 9.6
13ref|NM_166843.3| Drosophila melanogaster CG18166-RA, transcript ... 38 9.6
14gb|AY059436.1| Drosophila melanogaster GH02584 full length cDNA 38 9.6
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
16dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 38 9.6
17dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
18gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 o... 38 9.6
19emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on ch... 38 9.6
20gb|AC104431.2| Homo sapiens chromosome 8 clone RP11-550A5 map 8q... 38 9.6
21emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chrom... 38 9.6

>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA)
          Length = 1174

 Score =  377 bits (190), Expect = e-102
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaacagaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 aacagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaacagaa 1092

                                                                        
Query: 61   gaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcataca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 gaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcataca 1032

                                                                        
Query: 121  gtacaatacagacgcccccatcttccctatccccggccgtcttcctccggcgatcgacgt 180
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1031 gtacaatacagacgcccccatcttccctatctccggccgtcttcctccggcgatcgacgt 972

                          
Query: 181  atacacggacggtc 194
            ||||||||||||||
Sbjct: 971  atacacggacggtc 958



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>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds
          Length = 1785

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  tggtccttatttatcatacag 121
            |||||||||||||||||||||
Sbjct: 1462 tggtccttatttatcatacag 1442



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>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains
            part of a novel gene (FLJ30499) and the 3' end of a novel
            gene (FLJ30450), complete sequence
          Length = 41069

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   ctcactggtccttatttatc 115
            ||||||||||||||||||||
Sbjct: 3262 ctcactggtccttatttatc 3243



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>emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in linkage group 11,
             complete sequence
          Length = 111222

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   tatttatcatacagtacaat 127
             ||||||||||||||||||||
Sbjct: 36635 tatttatcatacagtacaat 36616



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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    cccggccgtcttcctccggc 171
              ||||||||||||||||||||
Sbjct: 951280 cccggccgtcttcctccggc 951261



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>emb|X55703.1|BCTRPED B.caldotenax trpE and 5'region of trpD genes for anthranilate
            synthase I
          Length = 2558

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 158  cgtcttcctccggcgatcg 176
            |||||||||||||||||||
Sbjct: 1296 cgtcttcctccggcgatcg 1278



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>gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence
          Length = 283075

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 45     caaggagcaaacagaagaa 63
              |||||||||||||||||||
Sbjct: 148411 caaggagcaaacagaagaa 148429



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>emb|AL009147.1|DMC171D11 Drosophila melanogaster cosmid clone 171D11
          Length = 35000

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   atctaccacccgctccatt 81
            |||||||||||||||||||
Sbjct: 4764 atctaccacccgctccatt 4746



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>gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 206282

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    tccttatttatcatacagt 122
              |||||||||||||||||||
Sbjct: 109322 tccttatttatcatacagt 109304



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>gb|AC084083.10| Homo sapiens chromosome 8, clone RP11-550A5, complete sequence
          Length = 209859

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 135    cccccatcttccctatccc 153
              |||||||||||||||||||
Sbjct: 120475 cccccatcttccctatccc 120457



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>gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170186

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    atctaccacccgctccatt 81
             |||||||||||||||||||
Sbjct: 80976 atctaccacccgctccatt 80958



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>gb|AC114402.2| Homo sapiens chromosome 1 clone RP11-397P13, complete sequence
          Length = 179308

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 46    aaggagcaaacagaagaat 64
             |||||||||||||||||||
Sbjct: 28479 aaggagcaaacagaagaat 28461



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>ref|NM_166843.3| Drosophila melanogaster CG18166-RA, transcript variant A (CG18166),
           mRNA
          Length = 1822

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 63  atctaccacccgctccatt 81
           |||||||||||||||||||
Sbjct: 160 atctaccacccgctccatt 178



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>gb|AY059436.1| Drosophila melanogaster GH02584 full length cDNA
          Length = 1849

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 63  atctaccacccgctccatt 81
           |||||||||||||||||||
Sbjct: 160 atctaccacccgctccatt 178



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 115      catacagtacaatacagac 133
                |||||||||||||||||||
Sbjct: 22459477 catacagtacaatacagac 22459495



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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 158     cgtcttcctccggcgatcg 176
               |||||||||||||||||||
Sbjct: 2246858 cgtcttcctccggcgatcg 2246876



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>dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016D04
          Length = 147313

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 115   catacagtacaatacagac 133
             |||||||||||||||||||
Sbjct: 29833 catacagtacaatacagac 29851



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>gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 of 74 of the complete
              sequence
          Length = 387740

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 63     atctaccacccgctccatt 81
              |||||||||||||||||||
Sbjct: 338459 atctaccacccgctccatt 338441



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>emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on chromosome 17, complete
             sequence
          Length = 177741

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 133   cgcccccatcttccctatc 151
             |||||||||||||||||||
Sbjct: 26578 cgcccccatcttccctatc 26596



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>gb|AC104431.2| Homo sapiens chromosome 8 clone RP11-550A5 map 8q24.2, complete
             sequence
          Length = 209870

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 135   cccccatcttccctatccc 153
             |||||||||||||||||||
Sbjct: 89384 cccccatcttccctatccc 89402



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>emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chromosome 2, complete
              sequence
          Length = 144844

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     caaggagcaaacagaagaa 63
              |||||||||||||||||||
Sbjct: 123793 caaggagcaaacagaagaa 123775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,457,993
Number of Sequences: 3902068
Number of extensions: 1457993
Number of successful extensions: 90367
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90254
Number of HSP's gapped (non-prelim): 113
length of query: 194
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 172
effective length of database: 17,147,199,772
effective search space: 2949318360784
effective search space used: 2949318360784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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