ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRA2_CAEEL (P34709) Sex-determining transformer protein 2 precur... 29 3.8
2TEGU_EHV1B (P28955) Large tegument protein 28 8.5
3SYI_THEFY (Q47QV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 8.5

>TRA2_CAEEL (P34709) Sex-determining transformer protein 2 precursor (Ce-Tra-2)|
          Length = 1475

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 212 KRQGCASSYVHALHRLVAFILVSSLDGFGTS*LYRFCLLAGQTLSAVSLF 63
           K  GC S  +  +  +  + + S+ D    S L  FCL AG+ L A ++F
Sbjct: 587 KNWGCTSILIFPIVFVYWYFIDSNFDKICVSVLPSFCLAAGEELFAKNMF 636



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>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 91   PAKRQNRYS*DVPKPSNDDTKIKATRRCRAWTYDDAQ 201
            PAK Q + + +VPKP+ D  K +A  + +    D A+
Sbjct: 2856 PAKDQTKSAAEVPKPAKDQAKDQAKDQAKDQAKDQAK 2892



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>SYI_THEFY (Q47QV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1060

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 177 PAPSSCFYLSVVVGWFWHVLAVSVLSFG 94
           PA   C  +    GWF+ ++AVS L FG
Sbjct: 561 PAQYICEAIDQTRGWFYSLMAVSTLVFG 588


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,726,116
Number of Sequences: 219361
Number of extensions: 480388
Number of successful extensions: 1180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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