ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (... 422 e-115
2emb|X98582.1|TAX98582 T.aestivum mRNA for HSP80-2 protein 170 1e-39
3gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosom... 42 0.68
4gb|AC149284.5| Mus musculus BAC clone RP23-136E9 from 18, comple... 42 0.68
5gb|AC097658.2| Homo sapiens BAC clone RP11-364L4 from 4, complet... 40 2.7

>gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (HSP90) mRNA,
            complete cds
          Length = 2553

 Score =  422 bits (213), Expect = e-115
 Identities = 213/213 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    agaagaaatatagctaacatatagtagaaccaacaataaccgaactgttccacgagtacc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2380 agaagaaatatagctaacatatagtagaaccaacaataaccgaactgttccacgagtacc 2321

                                                                        
Query: 61   acaaataagctaaccgcgcttaatgtttggccagccaaaagacaaaaccgatacagctaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2320 acaaataagctaaccgcgcttaatgtttggccagccaaaagacaaaaccgatacagctaa 2261

                                                                        
Query: 121  gacgtgccaaaaccatccaacgacgacactaagataaaagcaactagacggtgcagggca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2260 gacgtgccaaaaccatccaacgacgacactaagataaaagcaactagacggtgcagggca 2201

                                             
Query: 181  tggacatacgacgacgcgcagccttggcgctta 213
            |||||||||||||||||||||||||||||||||
Sbjct: 2200 tggacatacgacgacgcgcagccttggcgctta 2168



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>emb|X98582.1|TAX98582 T.aestivum mRNA for HSP80-2 protein
          Length = 2378

 Score =  170 bits (86), Expect = 1e-39
 Identities = 109/114 (95%), Gaps = 2/114 (1%)
 Strand = Plus / Minus

                                                                        
Query: 4    agaaatatagctaacatatagtagaaccaacaataaccgaactgttccacgagtaccaca 63
            |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 2375 agaaatatagctaacatataatagaaccaacaataac-gaactgttccacgagtaccaca 2317

                                                                  
Query: 64   aataagctaaccgcgcttaatgtttggccagccaaaagacaaaaccgatacagc 117
            || | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2316 aaca-gctagccgcgcttaatgtttggccagccaaaagacaaaaccgatacagc 2264



 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 74/83 (89%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                        
Query: 132  accatccaacgacgacactaa-gataaaagcaactagacggtgcagggcatggacatacg 190
            ||||||||||| ||||||||| ||||||| ||||||| |||||||||||||| |||| ||
Sbjct: 2262 accatccaacgtcgacactaaagataaaaacaactaggcggtgcagggcatgaacatccg 2203

                                   
Query: 191  acgacgcgcagccttggcgctta 213
            |||||  |||| |||||||||||
Sbjct: 2202 acgacaggcagacttggcgctta 2180



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>gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosome 18, complete
             sequence
          Length = 198519

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 92    cagccaaaagacaaaaccgat 112
             |||||||||||||||||||||
Sbjct: 35689 cagccaaaagacaaaaccgat 35709



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>gb|AC149284.5| Mus musculus BAC clone RP23-136E9 from 18, complete sequence
          Length = 204223

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     cagccaaaagacaaaaccgat 112
              |||||||||||||||||||||
Sbjct: 112682 cagccaaaagacaaaaccgat 112702



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>gb|AC097658.2| Homo sapiens BAC clone RP11-364L4 from 4, complete sequence
          Length = 165247

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    tggccagccaaaagacaaaa 107
             ||||||||||||||||||||
Sbjct: 98056 tggccagccaaaagacaaaa 98037


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,561,750
Number of Sequences: 3902068
Number of extensions: 1561750
Number of successful extensions: 103894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103882
Number of HSP's gapped (non-prelim): 9
length of query: 213
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 191
effective length of database: 17,147,199,772
effective search space: 3275115156452
effective search space used: 3275115156452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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