| Clone Name | rbaet60d01 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (... | 422 | e-115 | 2 | emb|X98582.1|TAX98582 T.aestivum mRNA for HSP80-2 protein | 170 | 1e-39 | 3 | gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosom... | 42 | 0.68 | 4 | gb|AC149284.5| Mus musculus BAC clone RP23-136E9 from 18, comple... | 42 | 0.68 | 5 | gb|AC097658.2| Homo sapiens BAC clone RP11-364L4 from 4, complet... | 40 | 2.7 |
|---|
>gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (HSP90) mRNA, complete cds Length = 2553 Score = 422 bits (213), Expect = e-115 Identities = 213/213 (100%) Strand = Plus / Minus Query: 1 agaagaaatatagctaacatatagtagaaccaacaataaccgaactgttccacgagtacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2380 agaagaaatatagctaacatatagtagaaccaacaataaccgaactgttccacgagtacc 2321 Query: 61 acaaataagctaaccgcgcttaatgtttggccagccaaaagacaaaaccgatacagctaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2320 acaaataagctaaccgcgcttaatgtttggccagccaaaagacaaaaccgatacagctaa 2261 Query: 121 gacgtgccaaaaccatccaacgacgacactaagataaaagcaactagacggtgcagggca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2260 gacgtgccaaaaccatccaacgacgacactaagataaaagcaactagacggtgcagggca 2201 Query: 181 tggacatacgacgacgcgcagccttggcgctta 213 ||||||||||||||||||||||||||||||||| Sbjct: 2200 tggacatacgacgacgcgcagccttggcgctta 2168
>emb|X98582.1|TAX98582 T.aestivum mRNA for HSP80-2 protein Length = 2378 Score = 170 bits (86), Expect = 1e-39 Identities = 109/114 (95%), Gaps = 2/114 (1%) Strand = Plus / Minus Query: 4 agaaatatagctaacatatagtagaaccaacaataaccgaactgttccacgagtaccaca 63 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct: 2375 agaaatatagctaacatataatagaaccaacaataac-gaactgttccacgagtaccaca 2317 Query: 64 aataagctaaccgcgcttaatgtttggccagccaaaagacaaaaccgatacagc 117 || | |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2316 aaca-gctagccgcgcttaatgtttggccagccaaaagacaaaaccgatacagc 2264 Score = 85.7 bits (43), Expect = 5e-14 Identities = 74/83 (89%), Gaps = 1/83 (1%) Strand = Plus / Minus Query: 132 accatccaacgacgacactaa-gataaaagcaactagacggtgcagggcatggacatacg 190 ||||||||||| ||||||||| ||||||| ||||||| |||||||||||||| |||| || Sbjct: 2262 accatccaacgtcgacactaaagataaaaacaactaggcggtgcagggcatgaacatccg 2203 Query: 191 acgacgcgcagccttggcgctta 213 ||||| |||| ||||||||||| Sbjct: 2202 acgacaggcagacttggcgctta 2180
>gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosome 18, complete sequence Length = 198519 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cagccaaaagacaaaaccgat 112 ||||||||||||||||||||| Sbjct: 35689 cagccaaaagacaaaaccgat 35709
>gb|AC149284.5| Mus musculus BAC clone RP23-136E9 from 18, complete sequence Length = 204223 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cagccaaaagacaaaaccgat 112 ||||||||||||||||||||| Sbjct: 112682 cagccaaaagacaaaaccgat 112702
>gb|AC097658.2| Homo sapiens BAC clone RP11-364L4 from 4, complete sequence Length = 165247 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tggccagccaaaagacaaaa 107 |||||||||||||||||||| Sbjct: 98056 tggccagccaaaagacaaaa 98037 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,561,750 Number of Sequences: 3902068 Number of extensions: 1561750 Number of successful extensions: 103894 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103882 Number of HSP's gapped (non-prelim): 9 length of query: 213 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 191 effective length of database: 17,147,199,772 effective search space: 3275115156452 effective search space used: 3275115156452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)