ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_573584.1| PREDICTED: Rattus norvegicus similar to signal ... 40 2.5
2gb|U14913.2|YSCH8167 Saccharomyces cerevisiae chromosome XII cos... 38 9.8
3gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 38 9.8
4emb|CR381596.11| Zebrafish DNA sequence from clone DKEY-230M3 in... 38 9.8
5ref|XM_763686.1| Giardia lamblia ATCC 50803 hypothetical protein... 38 9.8
6emb|AL157394.15| Human DNA sequence from clone RP11-399O19 on ch... 38 9.8
7emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS finger... 38 9.8
8gb|AC127346.4| Mus musculus BAC clone RP23-54F4 from chromosome ... 38 9.8
9dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 38 9.8
10gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 38 9.8
11emb|AL929582.10| Zebrafish DNA sequence from clone CH211-117M12,... 38 9.8
12emb|AL806513.5| Mouse DNA sequence from clone RP23-480E16 on chr... 38 9.8

>ref|XM_573584.1| PREDICTED: Rattus norvegicus similar to signal recognition
           particle,72 kDa subunit (LOC498351), mRNA
          Length = 1886

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   agaggtacaataagtaccag 21
           ||||||||||||||||||||
Sbjct: 866 agaggtacaataagtaccag 847



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>gb|U14913.2|YSCH8167 Saccharomyces cerevisiae chromosome XII cosmid 8167
          Length = 38870

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 47   tgctaaactatacatcaaa 65
            |||||||||||||||||||
Sbjct: 1472 tgctaaactatacatcaaa 1454



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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 174  aatatagggcaaagcacaactgt 196
            |||| ||||||||||||||||||
Sbjct: 8027 aatacagggcaaagcacaactgt 8049



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>emb|CR381596.11| Zebrafish DNA sequence from clone DKEY-230M3 in linkage group 3, complete
              sequence
          Length = 157536

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     ttgcatcatcatcaacgtg 48
              |||||||||||||||||||
Sbjct: 146073 ttgcatcatcatcaacgtg 146055



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>ref|XM_763686.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_59_40657_37226) partial mRNA
          Length = 3432

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 119 aataggtaccaaacaaggg 137
           |||||||||||||||||||
Sbjct: 186 aataggtaccaaacaaggg 168



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>emb|AL157394.15| Human DNA sequence from clone RP11-399O19 on chromosome 10 Contains the
             5' end of a novel gene (MGC22805), a novel pseudogene
             (FLJ12598), the gene for a novel Mov34/MPN/PAD-1 family
             domain containing protein (KIAA1373 FLJ35627 FLJ33359), a
             novel gene (FLJ36021), the ACTA2 gene for actin alpha 2
             smooth muscle aorta, the TNFRSF6 gene for tumor necrosis
             factor receptor superfamily member 6 and two CpG islands,
             complete sequence
          Length = 187313

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   aaacaagggaaatgtatat 147
             |||||||||||||||||||
Sbjct: 63441 aaacaagggaaatgtatat 63423



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>emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 9/10
          Length = 349115

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    tccgtacaagctggcgata 92
             |||||||||||||||||||
Sbjct: 79488 tccgtacaagctggcgata 79506



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>gb|AC127346.4| Mus musculus BAC clone RP23-54F4 from chromosome 6, complete sequence
          Length = 203187

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 163   caagataccataatatagg 181
             |||||||||||||||||||
Sbjct: 89835 caagataccataatatagg 89817



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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 74      tccgtacaagctggcgata 92
               |||||||||||||||||||
Sbjct: 2899767 tccgtacaagctggcgata 2899785



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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 147     tagcgatgctagggtgcaagata 169
               ||||||||||| |||||||||||
Sbjct: 3515490 tagcgatgctatggtgcaagata 3515468



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>emb|AL929582.10| Zebrafish DNA sequence from clone CH211-117M12, complete sequence
          Length = 175577

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 107    ccatcaaaacacaataggt 125
              |||||||||||||||||||
Sbjct: 123595 ccatcaaaacacaataggt 123613



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>emb|AL806513.5| Mouse DNA sequence from clone RP23-480E16 on chromosome 4, complete
             sequence
          Length = 189780

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    aagtaccagtctgtttatt 31
             |||||||||||||||||||
Sbjct: 18877 aagtaccagtctgtttatt 18859


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,594,382
Number of Sequences: 3902068
Number of extensions: 1594382
Number of successful extensions: 95555
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95463
Number of HSP's gapped (non-prelim): 92
length of query: 197
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 175
effective length of database: 17,147,199,772
effective search space: 3000759960100
effective search space used: 3000759960100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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