ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.14
2dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.14
3gb|AC144487.1| Gasterosteus aculeatus clone CH213-160O9, complet... 40 2.2
4emb|AJ747980.1| Trypanosoma cruzi kinetoplast minicircle, lineag... 40 2.2
5emb|AJ747976.1| Trypanosoma cruzi kinetoplast minicircle, lineag... 40 2.2
6emb|AL807821.8| Mouse DNA sequence from clone RP23-28N5 on chrom... 40 2.2
7gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chr... 38 8.5
8gb|AC008097.5| Drosophila melanogaster clone BACR20D06, complete... 38 8.5
9gb|AC008346.6| Drosophila melanogaster clone BACR45K04, complete... 38 8.5
10gb|AC131106.4| Mus musculus chromosome 15 clone RP23-301M20, com... 38 8.5
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 8.5
12gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cd... 38 8.5
13emb|AL078603.4|HSJ364H10 Human DNA sequence from clone RP3-364H1... 38 8.5
14emb|AL731606.2|OSJN00249 Oryza sativa genomic DNA, chromosome 4,... 38 8.5
15gb|AC090816.3| Homo sapiens chromosome 8, clone CTC-386L14, comp... 38 8.5
16gb|AC068672.11| Homo sapiens chromosome 8, clone RP11-566H8, com... 38 8.5
17gb|AC084741.4| Homo sapiens BAC clone RP11-537K6 from 4, complet... 38 8.5
18tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform ... 38 8.5
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
21gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome... 38 8.5
22gb|AC154256.2| Mus musculus BAC clone RP24-211C19 from 16, compl... 38 8.5
23gb|AC154311.2| Mus musculus BAC clone RP23-359C9 from 16, comple... 38 8.5
24emb|AL954831.17| Zebrafish DNA sequence from clone DKEY-12H9 in ... 38 8.5
25gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone ... 38 8.5
26gb|AE003794.4| Drosophila melanogaster chromosome 2R, section 56... 38 8.5
27gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome... 38 8.5

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 74      aagaaagccccacgtaaaatgtacac 99
               |||||||||||||||||||| |||||
Sbjct: 9434203 aagaaagccccacgtaaaatctacac 9434228



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>dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0059O19
          Length = 144386

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 74    aagaaagccccacgtaaaatgtacac 99
             |||||||||||||||||||| |||||
Sbjct: 21825 aagaaagccccacgtaaaatctacac 21850



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>gb|AC144487.1| Gasterosteus aculeatus clone CH213-160O9, complete sequence
          Length = 181162

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     atggccaacaaattaacaca 23
             ||||||||||||||||||||
Sbjct: 39508 atggccaacaaattaacaca 39489



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>emb|AJ747980.1| Trypanosoma cruzi kinetoplast minicircle, lineage IIb, strain Ivv
          cl4, isolate 02mp104
          Length = 322

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 19 acacaccaacataatcataa 38
          ||||||||||||||||||||
Sbjct: 76 acacaccaacataatcataa 57



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>emb|AJ747976.1| Trypanosoma cruzi kinetoplast minicircle, lineage IIb, strain Ivv
          cl4, isolate 02mp100
          Length = 322

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 19 acacaccaacataatcataa 38
          ||||||||||||||||||||
Sbjct: 76 acacaccaacataatcataa 57



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>emb|AL807821.8| Mouse DNA sequence from clone RP23-28N5 on chromosome X, complete
             sequence
          Length = 171451

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   aaagaataacaaatgttcca 145
             ||||||||||||||||||||
Sbjct: 74416 aaagaataacaaatgttcca 74435



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>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete
              sequence
          Length = 762694

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 119    tccatcgaaagaataacaa 137
              |||||||||||||||||||
Sbjct: 436960 tccatcgaaagaataacaa 436942



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>gb|AC008097.5| Drosophila melanogaster clone BACR20D06, complete sequence
          Length = 185670

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     ccatggccaacaaattaac 20
             |||||||||||||||||||
Sbjct: 47120 ccatggccaacaaattaac 47102



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>gb|AC008346.6| Drosophila melanogaster clone BACR45K04, complete sequence
          Length = 181142

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     ccatggccaacaaattaac 20
             |||||||||||||||||||
Sbjct: 48701 ccatggccaacaaattaac 48719



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>gb|AC131106.4| Mus musculus chromosome 15 clone RP23-301M20, complete sequence
          Length = 218875

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    aacataatcataattacac 44
             |||||||||||||||||||
Sbjct: 99356 aacataatcataattacac 99374



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 34       cataattacacaggtttta 52
                |||||||||||||||||||
Sbjct: 11984155 cataattacacaggtttta 11984173



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>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively
             spliced
          Length = 1285452

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 127   aagaataacaaatgttcca 145
             |||||||||||||||||||
Sbjct: 58033 aagaataacaaatgttcca 58015



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>emb|AL078603.4|HSJ364H10 Human DNA sequence from clone RP3-364H10 on chromosome 6q16.1-16.3,
             complete sequence
          Length = 150355

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 127   aagaataacaaatgttcca 145
             |||||||||||||||||||
Sbjct: 84313 aagaataacaaatgttcca 84295



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>emb|AL731606.2|OSJN00249 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03,
             complete sequence
          Length = 46422

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 145   atgcgtgtacgtacgtttgcatgcgtg 171
             |||| ||||||||||| ||||||||||
Sbjct: 17345 atgcatgtacgtacgtgtgcatgcgtg 17319



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>gb|AC090816.3| Homo sapiens chromosome 8, clone CTC-386L14, complete sequence
          Length = 126761

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 127   aagaataacaaatgttcca 145
             |||||||||||||||||||
Sbjct: 20799 aagaataacaaatgttcca 20781



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>gb|AC068672.11| Homo sapiens chromosome 8, clone RP11-566H8, complete sequence
          Length = 199583

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 127   aagaataacaaatgttcca 145
             |||||||||||||||||||
Sbjct: 47907 aagaataacaaatgttcca 47925



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>gb|AC084741.4| Homo sapiens BAC clone RP11-537K6 from 4, complete sequence
          Length = 146143

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 14    aattaacacaccaacataa 32
             |||||||||||||||||||
Sbjct: 12570 aattaacacaccaacataa 12552



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>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene,
             alternatively spliced, complete cds
          Length = 1421559

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 127   aagaataacaaatgttcca 145
             |||||||||||||||||||
Sbjct: 58033 aagaataacaaatgttcca 58015



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                           
Query: 145      atgcgtgtacgtacgtttgcatgcgtg 171
                |||| ||||||||||| ||||||||||
Sbjct: 22118864 atgcatgtacgtacgtgtgcatgcgtg 22118838



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 34       cataattacacaggtttta 52
                |||||||||||||||||||
Sbjct: 11980918 cataattacacaggtttta 11980936



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>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0052J20, complete sequence
          Length = 144969

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 34   cataattacacaggtttta 52
            |||||||||||||||||||
Sbjct: 4735 cataattacacaggtttta 4753



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>gb|AC154256.2| Mus musculus BAC clone RP24-211C19 from 16, complete sequence
          Length = 160023

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 125   gaaagaataacaaatgttc 143
             |||||||||||||||||||
Sbjct: 27121 gaaagaataacaaatgttc 27139



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>gb|AC154311.2| Mus musculus BAC clone RP23-359C9 from 16, complete sequence
          Length = 194103

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    gaaagaataacaaatgttc 143
              |||||||||||||||||||
Sbjct: 188746 gaaagaataacaaatgttc 188764



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>emb|AL954831.17| Zebrafish DNA sequence from clone DKEY-12H9 in linkage group 20, complete
              sequence
          Length = 230844

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 30     taatcataattacacaggtttta 52
              |||||||||||| ||||||||||
Sbjct: 184891 taatcataattaaacaggtttta 184869



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>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from
             chromosome 4, complete sequence
          Length = 90825

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 145   atgcgtgtacgtacgtttgcatgcgtg 171
             |||| ||||||||||| ||||||||||
Sbjct: 43369 atgcatgtacgtacgtgtgcatgcgtg 43343



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>gb|AE003794.4| Drosophila melanogaster chromosome 2R, section 56 of 73 of the complete
              sequence
          Length = 281805

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 2      ccatggccaacaaattaac 20
              |||||||||||||||||||
Sbjct: 271358 ccatggccaacaaattaac 271340



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>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0014I10, complete sequence
          Length = 113946

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 34    cataattacacaggtttta 52
             |||||||||||||||||||
Sbjct: 85417 cataattacacaggtttta 85435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,245,617
Number of Sequences: 3902068
Number of extensions: 1245617
Number of successful extensions: 92334
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92147
Number of HSP's gapped (non-prelim): 187
length of query: 174
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 152
effective length of database: 17,147,199,772
effective search space: 2606374365344
effective search space used: 2606374365344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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