| Clone Name | rbaet60b02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.14 Identities = 25/26 (96%) Strand = Plus / Plus Query: 74 aagaaagccccacgtaaaatgtacac 99 |||||||||||||||||||| ||||| Sbjct: 9434203 aagaaagccccacgtaaaatctacac 9434228
>dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0059O19 Length = 144386 Score = 44.1 bits (22), Expect = 0.14 Identities = 25/26 (96%) Strand = Plus / Plus Query: 74 aagaaagccccacgtaaaatgtacac 99 |||||||||||||||||||| ||||| Sbjct: 21825 aagaaagccccacgtaaaatctacac 21850
>gb|AC144487.1| Gasterosteus aculeatus clone CH213-160O9, complete sequence Length = 181162 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 atggccaacaaattaacaca 23 |||||||||||||||||||| Sbjct: 39508 atggccaacaaattaacaca 39489
>emb|AJ747980.1| Trypanosoma cruzi kinetoplast minicircle, lineage IIb, strain Ivv cl4, isolate 02mp104 Length = 322 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 acacaccaacataatcataa 38 |||||||||||||||||||| Sbjct: 76 acacaccaacataatcataa 57
>emb|AJ747976.1| Trypanosoma cruzi kinetoplast minicircle, lineage IIb, strain Ivv cl4, isolate 02mp100 Length = 322 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 acacaccaacataatcataa 38 |||||||||||||||||||| Sbjct: 76 acacaccaacataatcataa 57
>emb|AL807821.8| Mouse DNA sequence from clone RP23-28N5 on chromosome X, complete sequence Length = 171451 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 aaagaataacaaatgttcca 145 |||||||||||||||||||| Sbjct: 74416 aaagaataacaaatgttcca 74435
>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete sequence Length = 762694 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 tccatcgaaagaataacaa 137 ||||||||||||||||||| Sbjct: 436960 tccatcgaaagaataacaa 436942
>gb|AC008097.5| Drosophila melanogaster clone BACR20D06, complete sequence Length = 185670 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 ccatggccaacaaattaac 20 ||||||||||||||||||| Sbjct: 47120 ccatggccaacaaattaac 47102
>gb|AC008346.6| Drosophila melanogaster clone BACR45K04, complete sequence Length = 181142 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 ccatggccaacaaattaac 20 ||||||||||||||||||| Sbjct: 48701 ccatggccaacaaattaac 48719
>gb|AC131106.4| Mus musculus chromosome 15 clone RP23-301M20, complete sequence Length = 218875 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 aacataatcataattacac 44 ||||||||||||||||||| Sbjct: 99356 aacataatcataattacac 99374
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 cataattacacaggtttta 52 ||||||||||||||||||| Sbjct: 11984155 cataattacacaggtttta 11984173
>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced Length = 1285452 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 aagaataacaaatgttcca 145 ||||||||||||||||||| Sbjct: 58033 aagaataacaaatgttcca 58015
>emb|AL078603.4|HSJ364H10 Human DNA sequence from clone RP3-364H10 on chromosome 6q16.1-16.3, complete sequence Length = 150355 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 aagaataacaaatgttcca 145 ||||||||||||||||||| Sbjct: 84313 aagaataacaaatgttcca 84295
>emb|AL731606.2|OSJN00249 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence Length = 46422 Score = 38.2 bits (19), Expect = 8.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 145 atgcgtgtacgtacgtttgcatgcgtg 171 |||| ||||||||||| |||||||||| Sbjct: 17345 atgcatgtacgtacgtgtgcatgcgtg 17319
>gb|AC090816.3| Homo sapiens chromosome 8, clone CTC-386L14, complete sequence Length = 126761 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 aagaataacaaatgttcca 145 ||||||||||||||||||| Sbjct: 20799 aagaataacaaatgttcca 20781
>gb|AC068672.11| Homo sapiens chromosome 8, clone RP11-566H8, complete sequence Length = 199583 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 aagaataacaaatgttcca 145 ||||||||||||||||||| Sbjct: 47907 aagaataacaaatgttcca 47925
>gb|AC084741.4| Homo sapiens BAC clone RP11-537K6 from 4, complete sequence Length = 146143 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 aattaacacaccaacataa 32 ||||||||||||||||||| Sbjct: 12570 aattaacacaccaacataa 12552
>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively spliced, complete cds Length = 1421559 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 aagaataacaaatgttcca 145 ||||||||||||||||||| Sbjct: 58033 aagaataacaaatgttcca 58015
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 8.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 145 atgcgtgtacgtacgtttgcatgcgtg 171 |||| ||||||||||| |||||||||| Sbjct: 22118864 atgcatgtacgtacgtgtgcatgcgtg 22118838
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 cataattacacaggtttta 52 ||||||||||||||||||| Sbjct: 11980918 cataattacacaggtttta 11980936
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 cataattacacaggtttta 52 ||||||||||||||||||| Sbjct: 4735 cataattacacaggtttta 4753
>gb|AC154256.2| Mus musculus BAC clone RP24-211C19 from 16, complete sequence Length = 160023 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 gaaagaataacaaatgttc 143 ||||||||||||||||||| Sbjct: 27121 gaaagaataacaaatgttc 27139
>gb|AC154311.2| Mus musculus BAC clone RP23-359C9 from 16, complete sequence Length = 194103 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 gaaagaataacaaatgttc 143 ||||||||||||||||||| Sbjct: 188746 gaaagaataacaaatgttc 188764
>emb|AL954831.17| Zebrafish DNA sequence from clone DKEY-12H9 in linkage group 20, complete sequence Length = 230844 Score = 38.2 bits (19), Expect = 8.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 30 taatcataattacacaggtttta 52 |||||||||||| |||||||||| Sbjct: 184891 taatcataattaaacaggtttta 184869
>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence Length = 90825 Score = 38.2 bits (19), Expect = 8.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 145 atgcgtgtacgtacgtttgcatgcgtg 171 |||| ||||||||||| |||||||||| Sbjct: 43369 atgcatgtacgtacgtgtgcatgcgtg 43343
>gb|AE003794.4| Drosophila melanogaster chromosome 2R, section 56 of 73 of the complete sequence Length = 281805 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 ccatggccaacaaattaac 20 ||||||||||||||||||| Sbjct: 271358 ccatggccaacaaattaac 271340
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 cataattacacaggtttta 52 ||||||||||||||||||| Sbjct: 85417 cataattacacaggtttta 85435 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,245,617 Number of Sequences: 3902068 Number of extensions: 1245617 Number of successful extensions: 92334 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92147 Number of HSP's gapped (non-prelim): 187 length of query: 174 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 152 effective length of database: 17,147,199,772 effective search space: 2606374365344 effective search space used: 2606374365344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)