ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_758089.1| Theileria parva strain Muguga chromosome 3 Fe-h... 42 0.62
2gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold 42 0.62
3emb|BX571689.20| Zebrafish DNA sequence from clone DKEY-181H23 i... 42 0.62
4gb|AC068064.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 2.4
5emb|CR936218.6| Human DNA sequence from clone RP11-669E14, compl... 40 2.4
6emb|BX927298.8| Zebrafish DNA sequence from clone CH211-15J1 in ... 40 2.4
7emb|AL772144.4| Zebrafish DNA sequence from clone CH211-164J3 in... 40 2.4
8gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 ma... 40 2.4
9gb|AC098969.2| Homo sapiens chromosome 3 clone RP11-24O17, compl... 40 2.4
10gb|AC091628.2| Homo sapiens chromosome 17 map 17q21.1, complete ... 40 2.4
11gb|AC024934.38| Homo sapiens 12 BAC RP11-329A19 (Roswell Park Ca... 40 2.4
12gb|AC004139.2| Homo sapiens chromosome 17, clone RP5-843B9, comp... 40 2.4
13gb|AC040168.8| Homo sapiens chromosome 16 clone RP11-461O7, comp... 40 2.4
14gb|AC007495.9| Homo sapiens chromosome 16 clone RP11-355E10, com... 40 2.4
15gb|AC079613.7| Homo sapiens BAC clone RP11-325O22 from 2, comple... 40 2.4
16emb|BX890540.5| Zebrafish DNA sequence from clone DKEY-211C3 in ... 40 2.4
17emb|CR790380.7| Zebrafish DNA sequence from clone DKEY-238N5 in ... 40 2.4
18emb|BX005049.6| Zebrafish DNA sequence from clone DKEY-89O18 in ... 40 2.4
19gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genom... 38 9.7
20gb|AC165254.2| Mus musculus BAC clone RP23-285H4 from chromosome... 38 9.7
21gb|AC147893.2| Xenopus tropicalis clone CH216-36J13, complete se... 38 9.7
22gb|AC005409.1| Homo sapiens chromosome 12 clone 14951, complete ... 38 9.7
23gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genom... 38 9.7
24gb|AC137969.9| Mus musculus chromosome 7, clone RP23-267N11, com... 38 9.7
25gb|AC140799.6| Mus musculus chromosome 15, clone RP24-147N23, co... 38 9.7
26gb|AC161129.3| Pan troglodytes BAC clone CH251-332I16 from chrom... 38 9.7
27gb|AC161150.5| Pan troglodytes BAC clone CH251-410K2 from chromo... 38 9.7
28gb|AE006252.1| Lactococcus lactis subsp. lactis IL1403 section 1... 38 9.7
29gb|AC117577.16| Mus musculus chromosome 17, clone RP23-35F19, co... 38 9.7
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.7
31gb|AF068713.1| Caenorhabditis elegans cosmid T24A6, complete seq... 38 9.7
32gb|DQ145501.1| Selenaspidus articulatus isolate D510A elongation... 38 9.7
33emb|Z37092.1|CEF44F4 Caenorhabditis elegans Cosmid F44F4, comple... 38 9.7
34gb|AY329638.1| Bacteriophage S-PM2 PsbA (psbA), endonucelase VII... 38 9.7
35emb|AL450332.19| Human DNA sequence from clone RP11-138M12 on ch... 38 9.7
36emb|CR339046.11| Zebrafish DNA sequence from clone CH211-112C15 ... 38 9.7
37emb|AJ630128.1| Bacteriophage S-PM2 complete genome 38 9.7
38gb|AC162036.4| Mus musculus chromosome 3, clone RP24-324K2, comp... 38 9.7
39gb|AC063950.37| Homo sapiens 12 BAC RP11-511H9 (Roswell Park Can... 38 9.7
40emb|BX571697.3| Zebrafish DNA sequence from clone DKEY-201M8 in ... 38 9.7
41gb|AE014183.1| Mus musculus piebald deletion region section 11 o... 38 9.7
42gb|AC107311.8| Homo sapiens 3 BAC RP11-576M8 (Roswell Park Cance... 38 9.7
43dbj|AK093067.1| Homo sapiens cDNA FLJ35748 fis, clone TESTI20044... 38 9.7
44gb|AY037793.1| Caenorhabditis elegans GLY-1 (gly-1) mRNA, gly-1(... 38 9.7
45gb|AY037792.1| Caenorhabditis elegans SRA-12 (sra-12) precursor ... 38 9.7
46emb|AJ629075.1| Cyanophage S-RSM88 partial x gene, ORF178, y gen... 38 9.7
47gb|AC160634.2| Mus musculus BAC clone RP23-429J21 from chromosom... 38 9.7
48ref|NM_063944.2| Caenorhabditis elegans F44F4.6 (beta-1,6-N-acet... 38 9.7
49emb|BX640476.7| Zebrafish DNA sequence from clone DKEY-57C9 in l... 38 9.7
50dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
51gb|AC099344.4| Homo sapiens BAC clone RP11-427E2 from 2, complet... 38 9.7
52gb|AC083950.4| Homo sapiens BAC clone RP11-240P14 from 2, comple... 38 9.7
53gb|AC099706.8| Mus musculus, clone RP23-267P24, complete sequence 38 9.7
54gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromo... 38 9.7
55gb|AC157826.2| Pan troglodytes BAC clone CH251-276A2 from chromo... 38 9.7
56emb|BX005083.10| Zebrafish DNA sequence from clone CH211-220F13 ... 38 9.7
57dbj|BS000080.1| Pan troglodytes chromosome 22 clone:PTB-090L14, ... 38 9.7
58emb|BX072570.4| Zebrafish DNA sequence from clone DKEY-17E6 in l... 38 9.7
59emb|CR626885.5| Zebrafish DNA sequence from clone DKEY-166H15 in... 38 9.7
60emb|BX537168.4| Zebrafish DNA sequence from clone DKEY-105O6 in ... 38 9.7
61dbj|AP000959.3| Homo sapiens genomic DNA, chromosome 21 clone:RP... 38 9.7
62dbj|AP001685.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 9.7
63gb|AC104153.2| Papio anubis clone RP41-431I4, complete sequence 38 9.7
64gb|AC174452.2| Mus musculus BAC clone RP23-113E17 from chromosom... 38 9.7
65gb|AC102272.20| Mus musculus chromosome 3, clone RP24-283P8, com... 38 9.7
66gb|AC132232.6| Mus musculus BAC clone RP24-489N16 from chromosom... 38 9.7
67emb|AL773542.11| Zebrafish DNA sequence from clone CH211-174L22,... 38 9.7
68emb|CT030173.7| Mouse DNA sequence from clone RP24-264B23 on chr... 38 9.7
69emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chro... 38 9.7
70emb|AL845352.7| Mouse DNA sequence from clone RP23-29A7 on chrom... 38 9.7
71emb|AL805928.9| Mouse DNA sequence from clone RP23-136C12 on chr... 38 9.7
72gb|AC166749.6| Mus musculus chromosome 1, clone RP23-463A15, com... 38 9.7 
>ref|XM_758089.1| Theileria parva strain Muguga chromosome 3 Fe-hydrogenase (TP03_0164)
            partial mRNA
          Length = 1995

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 86   gttttataaatattcagaacataat 110
            |||||| ||||||||||||||||||
Sbjct: 1511 gttttagaaatattcagaacataat 1535
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>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold
          Length = 527158

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 174    cattttactgggatcttagtg 194
              |||||||||||||||||||||
Sbjct: 451535 cattttactgggatcttagtg 451515
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>emb|BX571689.20| Zebrafish DNA sequence from clone DKEY-181H23 in linkage group 24,
              complete sequence
          Length = 154608

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 25     tacatgcaactttcattattc 45
              |||||||||||||||||||||
Sbjct: 127521 tacatgcaactttcattattc 127541
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>gb|AC068064.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-199I14, complete
             sequence
          Length = 152776

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    atttccagcagttttataaatatt 99
             |||||||||| |||||||||||||
Sbjct: 49642 atttccagcatttttataaatatt 49665
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>emb|CR936218.6| Human DNA sequence from clone RP11-669E14, complete sequence
          Length = 213739

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   attgaactaagttgttctaa 128
             ||||||||||||||||||||
Sbjct: 15837 attgaactaagttgttctaa 15856
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>emb|BX927298.8| Zebrafish DNA sequence from clone CH211-15J1 in linkage group 1,
             complete sequence
          Length = 81258

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    gcagttttataaatattcag 102
             ||||||||||||||||||||
Sbjct: 78170 gcagttttataaatattcag 78189
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>emb|AL772144.4| Zebrafish DNA sequence from clone CH211-164J3 in linkage group 3 Contains
              three CpG islands, complete sequence
          Length = 153837

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     ttataaatattcagaacata 108
              ||||||||||||||||||||
Sbjct: 135053 ttataaatattcagaacata 135034
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>gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 map 1, complete sequence
          Length = 198381

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   cattttactgggatcttagt 193
             ||||||||||||||||||||
Sbjct: 82135 cattttactgggatcttagt 82116
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>gb|AC098969.2| Homo sapiens chromosome 3 clone RP11-24O17, complete sequence
          Length = 158560

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    catgcaactttcattattcataca 50
             |||||||||||||||||| |||||
Sbjct: 49338 catgcaactttcattattaataca 49361
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>gb|AC091628.2| Homo sapiens chromosome 17 map 17q21.1, complete sequence
          Length = 201397

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    attgaactaagttgttctaa 128
              ||||||||||||||||||||
Sbjct: 191276 attgaactaagttgttctaa 191257
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>gb|AC024934.38| Homo sapiens 12 BAC RP11-329A19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 204819

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     gaggcatctgagctgagtat 72
              ||||||||||||||||||||
Sbjct: 111993 gaggcatctgagctgagtat 112012
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>gb|AC004139.2| Homo sapiens chromosome 17, clone RP5-843B9, complete sequence
          Length = 126231

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   attgaactaagttgttctaa 128
             ||||||||||||||||||||
Sbjct: 53556 attgaactaagttgttctaa 53575
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>gb|AC040168.8| Homo sapiens chromosome 16 clone RP11-461O7, complete sequence
          Length = 170154

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   agagacccattttactggga 186
             ||||||||||||||||||||
Sbjct: 35317 agagacccattttactggga 35336
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>gb|AC007495.9| Homo sapiens chromosome 16 clone RP11-355E10, complete sequence
          Length = 198575

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 167  agagacccattttactggga 186
            ||||||||||||||||||||
Sbjct: 9126 agagacccattttactggga 9145
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>gb|AC079613.7| Homo sapiens BAC clone RP11-325O22 from 2, complete sequence
          Length = 164548

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tacatgcaactttcattatt 44
             ||||||||||||||||||||
Sbjct: 18279 tacatgcaactttcattatt 18260
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>emb|BX890540.5| Zebrafish DNA sequence from clone DKEY-211C3 in linkage group 19,
             complete sequence
          Length = 170919

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tacatgcaactttcattatt 44
             ||||||||||||||||||||
Sbjct: 36728 tacatgcaactttcattatt 36709
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>emb|CR790380.7| Zebrafish DNA sequence from clone DKEY-238N5 in linkage group 6, complete
              sequence
          Length = 170914

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     tataaatattcagaacataa 109
              ||||||||||||||||||||
Sbjct: 112562 tataaatattcagaacataa 112581
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>emb|BX005049.6| Zebrafish DNA sequence from clone DKEY-89O18 in linkage group 24,
             complete sequence
          Length = 251421

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    tacatgcaactttcattattcata 48
             ||||||||| ||||||||||||||
Sbjct: 54479 tacatgcaattttcattattcata 54456
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>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete
              sequence
          Length = 157397

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 99     tcagaacataattgaacta 117
              |||||||||||||||||||
Sbjct: 142437 tcagaacataattgaacta 142419
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>gb|AC165254.2| Mus musculus BAC clone RP23-285H4 from chromosome 13, complete sequence
          Length = 229672

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    catgcaactttcattattc 45
             |||||||||||||||||||
Sbjct: 77520 catgcaactttcattattc 77502
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>gb|AC147893.2| Xenopus tropicalis clone CH216-36J13, complete sequence
          Length = 159658

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    gttttataaatattcagaa 104
             |||||||||||||||||||
Sbjct: 16408 gttttataaatattcagaa 16426
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>gb|AC005409.1| Homo sapiens chromosome 12 clone 14951, complete sequence
          Length = 177364

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    ataaatattcagaacataa 109
             |||||||||||||||||||
Sbjct: 12709 ataaatattcagaacataa 12727
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>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
              sequence
          Length = 145590

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 99     tcagaacataattgaacta 117
              |||||||||||||||||||
Sbjct: 120956 tcagaacataattgaacta 120974
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>gb|AC137969.9| Mus musculus chromosome 7, clone RP23-267N11, complete sequence
          Length = 176711

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 153   agcatggacaaaccagaga 171
             |||||||||||||||||||
Sbjct: 68807 agcatggacaaaccagaga 68789
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>gb|AC140799.6| Mus musculus chromosome 15, clone RP24-147N23, complete sequence
          Length = 162329

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 91     ataaatattcagaacataattga 113
              |||||||||| ||||||||||||
Sbjct: 146008 ataaatattctgaacataattga 145986
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>gb|AC161129.3| Pan troglodytes BAC clone CH251-332I16 from chromosome 7, complete
              sequence
          Length = 172413

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 63     agctgagtatttgatttccagca 85
              |||| ||||||||||||||||||
Sbjct: 142256 agctcagtatttgatttccagca 142278
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>gb|AC161150.5| Pan troglodytes BAC clone CH251-410K2 from chromosome 7, complete
              sequence
          Length = 149746

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 63     agctgagtatttgatttccagca 85
              |||| ||||||||||||||||||
Sbjct: 104360 agctcagtatttgatttccagca 104338
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>gb|AE006252.1| Lactococcus lactis subsp. lactis IL1403 section 14 of 218 of the
             complete genome
          Length = 14267

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                            
Query: 67    gagtatttgatttccagcagttttataaata 97
             ||||| || ||||||||||||||||| ||||
Sbjct: 10050 gagtactttatttccagcagttttatcaata 10020
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>gb|AC117577.16| Mus musculus chromosome 17, clone RP23-35F19, complete sequence
          Length = 198548

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 93    aaatattcagaacataatt 111
             |||||||||||||||||||
Sbjct: 26025 aaatattcagaacataatt 26043
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 99       tcagaacataattgaacta 117
                |||||||||||||||||||
Sbjct: 22525709 tcagaacataattgaacta 22525727
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>gb|AF068713.1| Caenorhabditis elegans cosmid T24A6, complete sequence
          Length = 40419

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 66    tgagtatttgatttccagc 84
             |||||||||||||||||||
Sbjct: 12084 tgagtatttgatttccagc 12066
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>gb|DQ145501.1| Selenaspidus articulatus isolate D510A elongation factor 1-alpha
           (EF1a) gene, partial cds
          Length = 868

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 89  ttataaatattcagaacat 107
           |||||||||||||||||||
Sbjct: 249 ttataaatattcagaacat 231
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>emb|Z37092.1|CEF44F4 Caenorhabditis elegans Cosmid F44F4, complete sequence
          Length = 40094

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 62    gagctgagtatttgatttccagc 84
             ||||||| |||||||||||||||
Sbjct: 21630 gagctgactatttgatttccagc 21608
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>gb|AY329638.1| Bacteriophage S-PM2 PsbA (psbA), endonucelase VII (g49), hypothetical
            protein, and PsbD (psbD) genes, complete cds
          Length = 3841

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 138  ttctcctttacaaatagca 156
            |||||||||||||||||||
Sbjct: 1776 ttctcctttacaaatagca 1758
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>emb|AL450332.19| Human DNA sequence from clone RP11-138M12 on chromosome 6 Contains part
              of a novel gene, complete sequence
          Length = 174678

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 88     tttataaatattcagaaca 106
              |||||||||||||||||||
Sbjct: 131060 tttataaatattcagaaca 131042
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>emb|CR339046.11| Zebrafish DNA sequence from clone CH211-112C15 in linkage group 23,
             complete sequence
          Length = 170974

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 89    ttataaatattcagaacat 107
             |||||||||||||||||||
Sbjct: 88642 ttataaatattcagaacat 88660
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>emb|AJ630128.1| Bacteriophage S-PM2 complete genome
          Length = 196280

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 138    ttctcctttacaaatagca 156
              |||||||||||||||||||
Sbjct: 136953 ttctcctttacaaatagca 136935
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>gb|AC162036.4| Mus musculus chromosome 3, clone RP24-324K2, complete sequence
          Length = 161596

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 163   aaccagagacccattttac 181
             |||||||||||||||||||
Sbjct: 78214 aaccagagacccattttac 78196
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>gb|AC063950.37| Homo sapiens 12 BAC RP11-511H9 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 174231

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 91   ataaatattcagaacataa 109
            |||||||||||||||||||
Sbjct: 6382 ataaatattcagaacataa 6400
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>emb|BX571697.3| Zebrafish DNA sequence from clone DKEY-201M8 in linkage group 6,
             complete sequence
          Length = 83282

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 87    ttttataaatattcagaacataa 109
             |||||||||| ||||||||||||
Sbjct: 43827 ttttataaatgttcagaacataa 43805
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>gb|AE014183.1| Mus musculus piebald deletion region section 11 of 11 of the complete
              sequence
          Length = 249616

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 85     agttttataaatattcagaacataatt 111
              |||||||||||  ||||||||||||||
Sbjct: 102400 agttttataaactttcagaacataatt 102426
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>gb|AC107311.8| Homo sapiens 3 BAC RP11-576M8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192233

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     atgcaactttcattattca 46
              |||||||||||||||||||
Sbjct: 111991 atgcaactttcattattca 112009
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>dbj|AK093067.1| Homo sapiens cDNA FLJ35748 fis, clone TESTI2004459, highly similar to
            Homo sapiens cholinephosphotransferase 1 alpha mRNA
          Length = 1880

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 91   ataaatattcagaacataa 109
            |||||||||||||||||||
Sbjct: 1611 ataaatattcagaacataa 1629
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>gb|AY037793.1| Caenorhabditis elegans GLY-1 (gly-1) mRNA, gly-1(+) allele,
           complete cds
          Length = 1565

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 62  gagctgagtatttgatttccagc 84
           ||||||| |||||||||||||||
Sbjct: 935 gagctgactatttgatttccagc 957
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>gb|AY037792.1| Caenorhabditis elegans SRA-12 (sra-12) precursor RNA, sra-12(+)
            allele, complete cds; and GLY-1 (gly-1) precursor RNA,
            gly-1(+) allele, complete cds
          Length = 2656

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 62   gagctgagtatttgatttccagc 84
            ||||||| |||||||||||||||
Sbjct: 2012 gagctgactatttgatttccagc 2034
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>emb|AJ629075.1| Cyanophage S-RSM88 partial x gene, ORF178, y gene, psbA gene and
            partial psbD gene
          Length = 3899

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 138  ttctcctttacaaatagca 156
            |||||||||||||||||||
Sbjct: 2647 ttctcctttacaaatagca 2629
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>gb|AC160634.2| Mus musculus BAC clone RP23-429J21 from chromosome 12, complete
             sequence
          Length = 176160

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 93    aaatattcagaacataattgaac 115
             ||||||||||||||| |||||||
Sbjct: 70306 aaatattcagaacatgattgaac 70328
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>ref|NM_063944.2| Caenorhabditis elegans F44F4.6
           (beta-1,6-N-acetylglucosaminyltransferase) mRNA,
           complete cds
          Length = 1565

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 62  gagctgagtatttgatttccagc 84
           ||||||| |||||||||||||||
Sbjct: 935 gagctgactatttgatttccagc 957
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>emb|BX640476.7| Zebrafish DNA sequence from clone DKEY-57C9 in linkage group 21,
             complete sequence
          Length = 127139

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 19    agtatgtacatgcaactttcatt 41
             |||||||||||||||||| ||||
Sbjct: 52591 agtatgtacatgcaacttacatt 52613
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 99       tcagaacataattgaacta 117
                |||||||||||||||||||
Sbjct: 22518738 tcagaacataattgaacta 22518756
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>gb|AC099344.4| Homo sapiens BAC clone RP11-427E2 from 2, complete sequence
          Length = 135598

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 134    aatgttctcctttacaaat 152
              |||||||||||||||||||
Sbjct: 111570 aatgttctcctttacaaat 111552
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>gb|AC083950.4| Homo sapiens BAC clone RP11-240P14 from 2, complete sequence
          Length = 115507

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    tgttagtatgtacatgcaa 33
             |||||||||||||||||||
Sbjct: 57368 tgttagtatgtacatgcaa 57386
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>gb|AC099706.8| Mus musculus, clone RP23-267P24, complete sequence
          Length = 168307

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 110   ttgaactaagttgttctaa 128
             |||||||||||||||||||
Sbjct: 97077 ttgaactaagttgttctaa 97095
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>gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromosome unknown, complete
              sequence
          Length = 204271

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 90     tataaatattcagaacata 108
              |||||||||||||||||||
Sbjct: 199936 tataaatattcagaacata 199954
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>gb|AC157826.2| Pan troglodytes BAC clone CH251-276A2 from chromosome unknown, complete
              sequence
          Length = 185414

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 90     tataaatattcagaacata 108
              |||||||||||||||||||
Sbjct: 173947 tataaatattcagaacata 173929
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>emb|BX005083.10| Zebrafish DNA sequence from clone CH211-220F13 in linkage group 2,
             complete sequence
          Length = 212081

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 75    gatttccagcagttttataaata 97
             ||||| |||||||||||||||||
Sbjct: 57067 gatttacagcagttttataaata 57045
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>dbj|BS000080.1| Pan troglodytes chromosome 22 clone:PTB-090L14, map 22, complete
             sequences
          Length = 194210

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                            
Query: 79    tccagcagttttataaatattcagaacataa 109
             ||||||| |||  ||||||||||||||||||
Sbjct: 73385 tccagcactttagtaaatattcagaacataa 73355
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>emb|BX072570.4| Zebrafish DNA sequence from clone DKEY-17E6 in linkage group 12, complete
              sequence
          Length = 171655

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 8      taaagcgtgttagtatgta 26
              |||||||||||||||||||
Sbjct: 122011 taaagcgtgttagtatgta 121993
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>emb|CR626885.5| Zebrafish DNA sequence from clone DKEY-166H15 in linkage group 20,
             complete sequence
          Length = 28565

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 90    tataaatattcagaacata 108
             |||||||||||||||||||
Sbjct: 25662 tataaatattcagaacata 25680
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>emb|BX537168.4| Zebrafish DNA sequence from clone DKEY-105O6 in linkage group 4, complete
              sequence
          Length = 200744

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 93     aaatattcagaacataatt 111
              |||||||||||||||||||
Sbjct: 129237 aaatattcagaacataatt 129255
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>dbj|AP000959.3| Homo sapiens genomic DNA, chromosome 21 clone:RP11-797G14, complete
             sequence
          Length = 201112

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                            
Query: 79    tccagcagttttataaatattcagaacataa 109
             ||||||| |||  ||||||||||||||||||
Sbjct: 78581 tccagcactttagtaaatattcagaacataa 78551
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>dbj|AP001685.1| Homo sapiens genomic DNA, chromosome 21q, section 29/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                            
Query: 79    tccagcagttttataaatattcagaacataa 109
             ||||||| |||  ||||||||||||||||||
Sbjct: 13777 tccagcactttagtaaatattcagaacataa 13747
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>gb|AC104153.2| Papio anubis clone RP41-431I4, complete sequence
          Length = 191465

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 63    agctgagtatttgatttccagca 85
             |||| ||||||||||||||||||
Sbjct: 42709 agctcagtatttgatttccagca 42731
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>gb|AC174452.2| Mus musculus BAC clone RP23-113E17 from chromosome 10, complete
             sequence
          Length = 229159

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 161   caaaccagagacccattttactg 183
             |||| ||||||||||||||||||
Sbjct: 63761 caaaacagagacccattttactg 63783
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>gb|AC102272.20| Mus musculus chromosome 3, clone RP24-283P8, complete sequence
          Length = 161178

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 163   aaccagagacccattttac 181
             |||||||||||||||||||
Sbjct: 50874 aaccagagacccattttac 50892
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>gb|AC132232.6| Mus musculus BAC clone RP24-489N16 from chromosome 10, complete sequence
          Length = 166451

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 161    caaaccagagacccattttactg 183
              |||| ||||||||||||||||||
Sbjct: 110285 caaaacagagacccattttactg 110307
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>emb|AL773542.11| Zebrafish DNA sequence from clone CH211-174L22, complete sequence
          Length = 163443

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 19    agtatgtacatgcaactttcatt 41
             |||||||||||||||||| ||||
Sbjct: 72850 agtatgtacatgcaacttacatt 72872
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>emb|CT030173.7| Mouse DNA sequence from clone RP24-264B23 on chromosome 12, complete
              sequence
          Length = 156510

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 93     aaatattcagaacataattgaac 115
              ||||||||||||||| |||||||
Sbjct: 132012 aaatattcagaacatgattgaac 132034
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>emb|CT025523.9| Mouse DNA sequence from clone RP23-73M18 on chromosome 14, complete
             sequence
          Length = 200375

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    ataaatattcagaacataa 109
             |||||||||||||||||||
Sbjct: 55329 ataaatattcagaacataa 55347
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>emb|AL845352.7| Mouse DNA sequence from clone RP23-29A7 on chromosome 2, complete
              sequence
          Length = 196996

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 83     gcagttttataaatattca 101
              |||||||||||||||||||
Sbjct: 111135 gcagttttataaatattca 111153
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>emb|AL805928.9| Mouse DNA sequence from clone RP23-136C12 on chromosome 2, complete
              sequence
          Length = 192297

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 130    gtggaatgttctcctttac 148
              |||||||||||||||||||
Sbjct: 124257 gtggaatgttctcctttac 124275
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>gb|AC166749.6| Mus musculus chromosome 1, clone RP23-463A15, complete sequence
          Length = 186262

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 110    ttgaactaagttgttctaa 128
              |||||||||||||||||||
Sbjct: 149306 ttgaactaagttgttctaa 149324


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,151,387
Number of Sequences: 3902068
Number of extensions: 2151387
Number of successful extensions: 163303
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 163020
Number of HSP's gapped (non-prelim): 283
length of query: 195
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 173
effective length of database: 17,147,199,772
effective search space: 2966465560556
effective search space used: 2966465560556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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