ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MALT_VIBPA (Q87FQ5) HTH-type transcriptional regulator malT (ATP... 29 2.9
2PCK1_SCHPO (P36582) Protein kinase C-like 1 (EC 2.7.11.13) 28 8.5

>MALT_VIBPA (Q87FQ5) HTH-type transcriptional regulator malT (ATP-dependent|
           transcriptional activator malT)
          Length = 902

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 3   FISLFSSFVSHKRPAFLL*KEKGKKRNHFLCWCQ 104
           F +LF  F+SH+R A +  +EK   RN  + W Q
Sbjct: 320 FHNLFGEFLSHERQARIPQQEKDLHRNAAVAWLQ 353



to top

>PCK1_SCHPO (P36582) Protein kinase C-like 1 (EC 2.7.11.13)|
          Length = 988

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
 Frame = +3

Query: 105 AAWCVAVVFFLPSRRM-------CNVTQHLECRARVVD 197
           A WC    FFLP RR        C +T H +C   + D
Sbjct: 491 AQWCAHCGFFLPLRRKDCFKCVECGITCHGQCAHLIPD 528


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,738,056
Number of Sequences: 219361
Number of extensions: 524768
Number of successful extensions: 1909
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top