ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet60a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY108337.1| Zea mays PCO116943 mRNA sequence 60 3e-06
2emb|AL607131.15| Mouse DNA sequence from clone RP23-372H19 on ch... 46 0.047
3ref|XM_466392.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.18
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.18
5dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.18
6dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.18
7dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.18
8emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4,... 42 0.73
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.73
10dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.73
11emb|X53964.1|CCOVAL Japanese quail mRNA for ovalbumin 40 2.9
12emb|AL355886.4|CNS05TCX Human chromosome 14 DNA sequence BAC R-3... 40 2.9

>gb|AY108337.1| Zea mays PCO116943 mRNA sequence
          Length = 500

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 192 gctagaaggagaacttgaacaccatgtcatgctt 225
           |||||||||||||||||||||||||||| |||||
Sbjct: 328 gctagaaggagaacttgaacaccatgtcgtgctt 295



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>emb|AL607131.15| Mouse DNA sequence from clone RP23-372H19 on chromosome 13 Contains the
             Agtr1a gene for angiotensin receptor 1a, a novel
             pseudogene and a CpG island, complete sequence
          Length = 172871

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 81    ttattattgctgatcttcctacgaggt 107
             |||||||||||| ||||||||||||||
Sbjct: 37153 ttattattgctgttcttcctacgaggt 37127



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>ref|XM_466392.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1299

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 193  ctagaaggagaacttgaacaccatgt 218
            |||||||| |||||||||||||||||
Sbjct: 1169 ctagaaggtgaacttgaacaccatgt 1144



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 193      ctagaaggagaacttgaacaccatgt 218
                |||||||| |||||||||||||||||
Sbjct: 22124265 ctagaaggtgaacttgaacaccatgt 22124240



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>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0703B01
          Length = 137445

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 193   ctagaaggagaacttgaacaccatgt 218
             |||||||| |||||||||||||||||
Sbjct: 98164 ctagaaggtgaacttgaacaccatgt 98139



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>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1342F01
          Length = 153287

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 193   ctagaaggagaacttgaacaccatgt 218
             |||||||| |||||||||||||||||
Sbjct: 20109 ctagaaggtgaacttgaacaccatgt 20084



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>dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E04, full
            insert sequence
          Length = 1324

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 193  ctagaaggagaacttgaacaccatgt 218
            |||||||| |||||||||||||||||
Sbjct: 1169 ctagaaggtgaacttgaacaccatgt 1144



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>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
             complete sequence
          Length = 138969

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 191   agctagaaggagaacttgaacaccatgtc 219
             ||||||||||||||||||||  |||||||
Sbjct: 88861 agctagaaggagaacttgaaggccatgtc 88833



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 191      agctagaaggagaacttgaacaccatgtc 219
                ||||||||||||||||||||  |||||||
Sbjct: 22880086 agctagaaggagaacttgaaggccatgtc 22880058



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>dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F10, full
            insert sequence
          Length = 1343

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 191  agctagaaggagaacttgaacaccatgtc 219
            ||||||||||||||||||||  |||||||
Sbjct: 1154 agctagaaggagaacttgaaggccatgtc 1126



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>emb|X53964.1|CCOVAL Japanese quail mRNA for ovalbumin
          Length = 1879

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 17   tttataatgcatttttagaaagtg 40
            |||||||||||| |||||||||||
Sbjct: 1690 tttataatgcatctttagaaagtg 1667



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>emb|AL355886.4|CNS05TCX Human chromosome 14 DNA sequence BAC R-372C16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 164609

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tttataatgcatttttagaa 36
             ||||||||||||||||||||
Sbjct: 58963 tttataatgcatttttagaa 58944


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,562,013
Number of Sequences: 3902068
Number of extensions: 1562013
Number of successful extensions: 107375
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107297
Number of HSP's gapped (non-prelim): 78
length of query: 225
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 203
effective length of database: 17,147,199,772
effective search space: 3480881553716
effective search space used: 3480881553716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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