| Clone Name | rbaet60a04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108337.1| Zea mays PCO116943 mRNA sequence Length = 500 Score = 60.0 bits (30), Expect = 3e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 192 gctagaaggagaacttgaacaccatgtcatgctt 225 |||||||||||||||||||||||||||| ||||| Sbjct: 328 gctagaaggagaacttgaacaccatgtcgtgctt 295
>emb|AL607131.15| Mouse DNA sequence from clone RP23-372H19 on chromosome 13 Contains the Agtr1a gene for angiotensin receptor 1a, a novel pseudogene and a CpG island, complete sequence Length = 172871 Score = 46.1 bits (23), Expect = 0.047 Identities = 26/27 (96%) Strand = Plus / Minus Query: 81 ttattattgctgatcttcctacgaggt 107 |||||||||||| |||||||||||||| Sbjct: 37153 ttattattgctgttcttcctacgaggt 37127
>ref|XM_466392.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1299 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Minus Query: 193 ctagaaggagaacttgaacaccatgt 218 |||||||| ||||||||||||||||| Sbjct: 1169 ctagaaggtgaacttgaacaccatgt 1144
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Minus Query: 193 ctagaaggagaacttgaacaccatgt 218 |||||||| ||||||||||||||||| Sbjct: 22124265 ctagaaggtgaacttgaacaccatgt 22124240
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Minus Query: 193 ctagaaggagaacttgaacaccatgt 218 |||||||| ||||||||||||||||| Sbjct: 98164 ctagaaggtgaacttgaacaccatgt 98139
>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1342F01 Length = 153287 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Minus Query: 193 ctagaaggagaacttgaacaccatgt 218 |||||||| ||||||||||||||||| Sbjct: 20109 ctagaaggtgaacttgaacaccatgt 20084
>dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E04, full insert sequence Length = 1324 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Minus Query: 193 ctagaaggagaacttgaacaccatgt 218 |||||||| ||||||||||||||||| Sbjct: 1169 ctagaaggtgaacttgaacaccatgt 1144
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 191 agctagaaggagaacttgaacaccatgtc 219 |||||||||||||||||||| ||||||| Sbjct: 88861 agctagaaggagaacttgaaggccatgtc 88833
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 191 agctagaaggagaacttgaacaccatgtc 219 |||||||||||||||||||| ||||||| Sbjct: 22880086 agctagaaggagaacttgaaggccatgtc 22880058
>dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F10, full insert sequence Length = 1343 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 191 agctagaaggagaacttgaacaccatgtc 219 |||||||||||||||||||| ||||||| Sbjct: 1154 agctagaaggagaacttgaaggccatgtc 1126
>emb|X53964.1|CCOVAL Japanese quail mRNA for ovalbumin Length = 1879 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 tttataatgcatttttagaaagtg 40 |||||||||||| ||||||||||| Sbjct: 1690 tttataatgcatctttagaaagtg 1667
>emb|AL355886.4|CNS05TCX Human chromosome 14 DNA sequence BAC R-372C16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 164609 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 tttataatgcatttttagaa 36 |||||||||||||||||||| Sbjct: 58963 tttataatgcatttttagaa 58944 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,562,013 Number of Sequences: 3902068 Number of extensions: 1562013 Number of successful extensions: 107375 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107297 Number of HSP's gapped (non-prelim): 78 length of query: 225 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 203 effective length of database: 17,147,199,772 effective search space: 3480881553716 effective search space used: 3480881553716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)