ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet59g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT1_HUMAN (Q13231) Chitotriosidase-1 precursor (EC 3.2.1.14) (... 30 1.8
2OVGP1_PIG (Q28990) Oviduct-specific glycoprotein precursor (Ovid... 30 2.3
3RPTN_MOUSE (P97347) Repetin 30 2.3
4CAPP4_ARATH (Q8GVE8) Phosphoenolpyruvate carboxylase 4 (EC 4.1.1... 29 3.0
5GP149_CHICK (Q9DDD1) Probable G-protein coupled receptor 149 (G-... 28 6.7
6OVGP1_SHEEP (Q28542) Oviduct-specific glycoprotein precursor (Ov... 28 8.7
7OVGP1_BOVIN (Q28042) Oviduct-specific glycoprotein precursor (Ov... 28 8.7

>CHIT1_HUMAN (Q13231) Chitotriosidase-1 precursor (EC 3.2.1.14) (Chitinase-1)|
          Length = 466

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +3

Query: 3   IVHLIDWINEFSHTTHNGEQEKLTGHNSS-QQCQKSCRFRAHASIDKVLERKAWKG-HSS 176
           I   +D++N  ++  H G  EK+TGHNS   + Q+     A  ++D  +++   KG  +S
Sbjct: 200 IAQNLDFVNLMAYDFH-GSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPAS 258

Query: 177 KLLL 188
           KL+L
Sbjct: 259 KLIL 262



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>OVGP1_PIG (Q28990) Oviduct-specific glycoprotein precursor (Oviductal|
           glycoprotein) (Oviductin) (Estrogen-dependent oviduct
           protein) (POSP-E3)
          Length = 527

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +3

Query: 12  LIDWINEFSHTTHNGEQEKLTGHNS 86
           L+D+IN  S+  H G  EK+TGHNS
Sbjct: 204 LLDFINVLSYDLH-GSWEKVTGHNS 227



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>RPTN_MOUSE (P97347) Repetin|
          Length = 1130

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +3

Query: 36   SHTTHNGEQEKLTGHNSSQQCQKSCRFRAHASIDKVLERKAWK 164
            S+  H+G   KL+  NS ++ +++   R+H   ++ ++++ WK
Sbjct: 886  SYVEHSGRSGKLSQQNSREEVRQTQSQRSHDRREQQIQQQTWK 928



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>CAPP4_ARATH (Q8GVE8) Phosphoenolpyruvate carboxylase 4 (EC 4.1.1.31) (PEPCase|
           4) (PEPC 4) (AtPPC4)
          Length = 1032

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 15  IDWINEFSHTTHNGEQEKLTGHNSS 89
           IDW  E     HNG QE + G++ S
Sbjct: 673 IDWYREHIQKNHNGHQEVMVGYSDS 697



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>GP149_CHICK (Q9DDD1) Probable G-protein coupled receptor 149 (G-protein coupled|
           receptor R35)
          Length = 723

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 159 MLCVLELCQW-MHVP*IGSSFDIVGMSYALSIFLVLRCVLC 40
           ++C+L LC W  ++P     F     SY L +F+V     C
Sbjct: 162 LICILPLCGWGKYIPTTWGCFTDHASSYILFLFIVYSLCFC 202



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>OVGP1_SHEEP (Q28542) Oviduct-specific glycoprotein precursor (Oviductal|
           glycoprotein) (Oviductin) (Estrogen-dependent oviduct
           protein) (Estrus-associated oviducal glycoprotein)
           (OEGP)
          Length = 539

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 12  LIDWINEFSHTTHNGEQEKLTGHNS 86
           L+D+I+  S+  H G  EK+TGHNS
Sbjct: 204 LLDFISVLSYDLH-GSWEKVTGHNS 227



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>OVGP1_BOVIN (Q28042) Oviduct-specific glycoprotein precursor (Oviductal|
           glycoprotein) (Oviductin) (Estrogen-dependent oviduct
           protein) (Fragment)
          Length = 537

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 12  LIDWINEFSHTTHNGEQEKLTGHNS 86
           L+D+I+  S+  H G  EK+TGHNS
Sbjct: 201 LLDFISVLSYDLH-GSWEKVTGHNS 224


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,048,450
Number of Sequences: 219361
Number of extensions: 392364
Number of successful extensions: 898
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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