ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet59f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map... 40 3.0
2emb|BX813325.2| Mouse DNA sequence from clone RP23-319D11 on chr... 40 3.0
3dbj|BS000025.1| Pan troglodytes chromosome 22 clone:PTB-017K18, ... 40 3.0
4emb|AL672036.6| Mouse DNA sequence from clone RP23-395P1 on chro... 40 3.0

>gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map ve016, complete
            sequence
          Length = 91863

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tctcaaactctcataaccag 119
            ||||||||||||||||||||
Sbjct: 4699 tctcaaactctcataaccag 4680



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>emb|BX813325.2| Mouse DNA sequence from clone RP23-319D11 on chromosome X, complete
             sequence
          Length = 62720

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   acataaaaaagaagagctaa 170
             ||||||||||||||||||||
Sbjct: 32924 acataaaaaagaagagctaa 32943



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>dbj|BS000025.1| Pan troglodytes chromosome 22 clone:PTB-017K18, map 22, complete
             sequences
          Length = 144566

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 134   taaaattcacccctttgacataaa 157
             |||||||||||||||| |||||||
Sbjct: 90004 taaaattcacccctttaacataaa 90027



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>emb|AL672036.6| Mouse DNA sequence from clone RP23-395P1 on chromosome X, complete
              sequence
          Length = 186034

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     agaaaaaacagagccaaatt 59
              ||||||||||||||||||||
Sbjct: 149079 agaaaaaacagagccaaatt 149098


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,570,176
Number of Sequences: 3902068
Number of extensions: 2570176
Number of successful extensions: 99592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99575
Number of HSP's gapped (non-prelim): 17
length of query: 233
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 211
effective length of database: 17,147,199,772
effective search space: 3618059151892
effective search space used: 3618059151892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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