ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet59e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197685.1| Oryza sativa (japonica cultivar-group) hypothet... 54 2e-04
2gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 gen... 54 2e-04
3gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 54 2e-04
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 54 2e-04
6gb|AC012166.6| Drosophila melanogaster clone BACR03A06, complete... 42 0.78
7gb|AC016159.5| Drosophila melanogaster clone BACR48D05, complete... 42 0.78
8gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, compl... 42 0.78
9gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, comp... 42 0.78
10gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple... 42 0.78
11gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,... 42 0.78
12gb|AC007593.5|AC007593 Drosophila melanogaster, chromosome 2R, r... 42 0.78
13gb|AE003789.5| Drosophila melanogaster chromosome 2R, section 6 ... 42 0.78
14gb|AC009352.5| Drosophila melanogaster, chromosome 2L, region 34... 40 3.1
15gb|AC008332.11|AC008332 Drosophila melanogaster, chromosome 2L, ... 40 3.1
16gb|AE003638.2| Drosophila melanogaster chromosome 2L, section 47... 40 3.1 
>ref|NM_197685.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0015J15.1), mRNA
          Length = 1392

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 195  tcctcctgcgcgtatatcctctccggctggccttcctccagcgcgcg 241
            |||||| ||| ||||||||||||||||| ||| || |||||||||||
Sbjct: 1373 tcctccagcgagtatatcctctccggctcgccgtcgtccagcgcgcg 1327
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>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
              sequence
          Length = 135510

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                             
Query: 195    tcctcctgcgcgtatatcctctccggctggccttcctccagcgcgcg 241
              |||||| ||| ||||||||||||||||| ||| || |||||||||||
Sbjct: 130357 tcctccagcgagtatatcctctccggctcgccgtcgtccagcgcgcg 130403
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>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence,
            complete sequence
          Length = 144798

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                           
Query: 195  tcctcctgcgcgtatatcctctccggctggccttcctccagcgcgcg 241
            |||||| ||| ||||||||||||||||| ||| || |||||||||||
Sbjct: 1704 tcctccagcgagtatatcctctccggctcgccgtcgtccagcgcgcg 1750
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 195      tcctcctgcgcgtatatcctctccggctggccttcctccagcgcgcg 241
                |||||| ||| ||||||||||||||||| ||| || |||||||||||
Sbjct: 21204002 tcctccagcgagtatatcctctccggctcgccgtcgtccagcgcgcg 21203956
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 195      tcctcctgcgcgtatatcctctccggctggccttcctccagcgcgcg 241
                |||||| ||| ||||||||||||||||| ||| || |||||||||||
Sbjct: 21215266 tcctccagcgagtatatcctctccggctcgccgtcgtccagcgcgcg 21215220
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>gb|AC012166.6| Drosophila melanogaster clone BACR03A06, complete sequence
          Length = 164356

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   atttcatttcatttcgtagtc 175
             |||||||||||||||||||||
Sbjct: 20858 atttcatttcatttcgtagtc 20878
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>gb|AC016159.5| Drosophila melanogaster clone BACR48D05, complete sequence
          Length = 188725

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   atttcatttcatttcgtagtc 175
             |||||||||||||||||||||
Sbjct: 13100 atttcatttcatttcgtagtc 13120
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>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   aagagcatttcatttcatttc 169
             |||||||||||||||||||||
Sbjct: 41765 aagagcatttcatttcatttc 41745
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>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   aagagcatttcatttcatttc 169
             |||||||||||||||||||||
Sbjct: 41765 aagagcatttcatttcatttc 41745
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>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   aagagcatttcatttcatttc 169
             |||||||||||||||||||||
Sbjct: 30950 aagagcatttcatttcatttc 30970
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>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    aagagcatttcatttcatttc 169
              |||||||||||||||||||||
Sbjct: 104126 aagagcatttcatttcatttc 104106
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>gb|AC007593.5|AC007593 Drosophila melanogaster, chromosome 2R, region 42E-43A, BAC clone
             BACR01C10, complete sequence
          Length = 173702

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 155   atttcatttcatttcgtagtc 175
             |||||||||||||||||||||
Sbjct: 24402 atttcatttcatttcgtagtc 24382
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>gb|AE003789.5| Drosophila melanogaster chromosome 2R, section 6 of 73 of the complete
              sequence
          Length = 415717

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 155    atttcatttcatttcgtagtc 175
              |||||||||||||||||||||
Sbjct: 311270 atttcatttcatttcgtagtc 311250
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>gb|AC009352.5| Drosophila melanogaster, chromosome 2L, region 34A-34A, BAC clone
              BACR11M13, complete sequence
          Length = 190301

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    agcatttcatttcatttcgt 171
              ||||||||||||||||||||
Sbjct: 188926 agcatttcatttcatttcgt 188945
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>gb|AC008332.11|AC008332 Drosophila melanogaster, chromosome 2L, region 34A-34A, BAC clone
              BACR48D10, complete sequence
          Length = 153250

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    agcatttcatttcatttcgt 171
              ||||||||||||||||||||
Sbjct: 129114 agcatttcatttcatttcgt 129133
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>gb|AE003638.2| Drosophila melanogaster chromosome 2L, section 47 of 83 of the complete
              sequence
          Length = 254309

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    agcatttcatttcatttcgt 171
              ||||||||||||||||||||
Sbjct: 132362 agcatttcatttcatttcgt 132381


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,107,569
Number of Sequences: 3902068
Number of extensions: 2107569
Number of successful extensions: 48965
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48923
Number of HSP's gapped (non-prelim): 42
length of query: 241
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 219
effective length of database: 17,147,199,772
effective search space: 3755236750068
effective search space used: 3755236750068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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