>RS7_THICU (O50564) 30S ribosomal protein S7|
          Length = 156

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
 Frame = +1

Query: 52  ISQKPIAGNLRVKK---------SPTAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQP 204
           I ++P  GNL V K           +  E+I+   F+ +Q K     + + S+A    +P
Sbjct: 12  ILREPKFGNLDVAKFMNVVMLSGKKSIAESIVYGAFEAIQNKTGKDPIEIFSQALSNVKP 71

Query: 205 QVHRKSLSA*GANLQVP 255
            V  KS    GAN QVP
Sbjct: 72  MVEVKSRRVGGANYQVP 88

>RS7_UREPA (Q9PPW6) 30S ribosomal protein S7|
          Length = 155

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 109 ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVPT 258
           ++II + F++V+QK     + + +KA +   P +  K     G+N QVPT
Sbjct: 39  QSIIYSAFEIVEQKTGKPALEVFNKAIDNVMPIIELKVRRVGGSNFQVPT 88

>RS7_MYCGA (Q7NAV2) 30S ribosomal protein S7|
          Length = 155

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 109 ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVPT 258
           + I+  +F L+ QK     + + +KA E   P++  K     GAN QVPT
Sbjct: 39  QKILYGSFDLIAQKTQKDPLEIFNKAVENIMPRLELKVRRIAGANYQVPT 88

>RS7_MYCS5 (Q4A702) 30S ribosomal protein S7|
          Length = 156

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 109 ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVPT 258
           ++I+ + F LV++K     M + ++A E   PQ+  ++    G N QVPT
Sbjct: 40  QDILYSAFDLVKEKTKKDPMQVFTQAVENITPQLEIRTRRIGGTNYQVPT 89

>RS7_TREPA (O83272) 30S ribosomal protein S7|
          Length = 156

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = +1

Query: 34  ALWRTIISQKPIAGNLRVKKSPTAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVH 213
           A + +++  K I   +   K  TA   I+    + +QQ+  +  +P+ +KA E  +P V 
Sbjct: 16  ARYNSVVLAKFICRMMLAGKKATAV-GIMYDCLERIQQRTGEEPLPVFTKALENVKPAVE 74

Query: 214 RKSLSA*GANLQVP 255
            KS    G+  QVP
Sbjct: 75  VKSRRVGGSTYQVP 88

>RS7_TREDE (Q73NV4) 30S ribosomal protein S7|
          Length = 156

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +1

Query: 88  KKSPTAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 255
           KKS T K  I+  +F  +++K  +  + + SKA +  +P V  KS    GA  QVP
Sbjct: 35  KKSITTK--IMYDSFDKIKEKTGEEPLAVFSKALDNVKPVVEVKSRRVGGATYQVP 88

>RS7_MYCHJ (Q4AAQ5) 30S ribosomal protein S7|
          Length = 156

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 100 TAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 255
           T  +NI+ + F+LV++K+    + +  +A +   P    +S    G N QVP
Sbjct: 37  TTAQNILYSAFKLVEEKLQKDALEVFRQAVKNVTPLTEVRSRRIGGTNYQVP 88

>RS7_MYCH7 (Q4A8T6) 30S ribosomal protein S7|
          Length = 156

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 100 TAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 255
           T  +NI+ + F+LV++K+    + +  +A +   P    +S    G N QVP
Sbjct: 37  TTAQNILYSAFKLVEEKLQKDALEVFRQAVKNVTPLTEVRSRRIGGTNYQVP 88

>RS7_MYCH2 (Q601W7) 30S ribosomal protein S7|
          Length = 156

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 100 TAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 255
           T  +NI+ + F+LV++K+    + +  +A +   P    +S    G N QVP
Sbjct: 37  TTAQNILYSAFKLVEEKLQKDALEVFRQAVKNVTPLTEVRSRRIGGTNYQVP 88

>YI48_METSM (P22344) Insertion element ISM1 hypothetical 48.3 kDa protein|
           (ORFIS)
          Length = 401

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +3

Query: 21  CIICSFVEDNHFTEAYCWEPKGQKISNSQREHYYNNVSACSTKNHGRPNA 170
           CI   F   NH  + YC   +  KI+  QR+H Y N  A   KN  R N+
Sbjct: 263 CIFHLFQTINHKLKVYC---RRNKINGKQRDHIYEN--AQELKNCFRQNS 307

>PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (Protein let1)|
          Length = 403

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 106 KENIITTTFQLVQ---QKIMDAQMPMLSKAAEMRQPQVHRKSLSA 231
           K N++ +   +VQ   QKI DA++ +L K   +R+ +  R  L+A
Sbjct: 6   KTNVLQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNA 50

>RBM16_HUMAN (Q9UPN6) Putative RNA-binding protein 16 (RNA-binding motif protein|
           16)
          Length = 1271

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 40  WRTIISQKPIAGNLRVKKSPT--AKENIITTTFQLVQQKIMDAQMPM 174
           W T+ S +P+   ++  +SPT   KE ++TT  ++    +   Q+P+
Sbjct: 599 WETVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPV 645

>RS7_MESFL (Q6F0J3) 30S ribosomal protein S7|
          Length = 155

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 109 ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 255
           + II   F ++++K  +  + + +KA E  +P +  K     GAN QVP
Sbjct: 39  QTIIYDAFDIIKEKTGEEPIEIFNKAIENIKPHLELKVRRIGGANYQVP 87

>RS7_RALEJ (Q46WD9) 30S ribosomal protein S7|
          Length = 156

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
 Frame = +1

Query: 64  PIAGNLRVKK---------SPTAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHR 216
           P  GN+ V K           +  E I+   F  +++K   A + + S A    +P V  
Sbjct: 16  PKFGNVEVAKFMNVLMLDGKKSVAERIVYGAFDQIEKKAGKAPIEVFSVAINNVKPVVEV 75

Query: 217 KSLSA*GANLQVP 255
           KS    GAN QVP
Sbjct: 76  KSRRVGGANYQVP 88

>RS7_MYCPE (Q8EX20) 30S ribosomal protein S7|
          Length = 155

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 109 ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVPT 258
           + I+  +F L+++K  +  + +  KA E   P +  +     G+N QVPT
Sbjct: 39  QQIVYQSFDLIKKKTNEDGIEVFKKALENIMPSLELRVRRVAGSNFQVPT 88

>RS7_MYCMS (Q8VMU1) 30S ribosomal protein S7|
          Length = 155

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 109 ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 255
           ++II   F ++++K     + + +KA E  +P +  K     GAN QVP
Sbjct: 39  QSIIYDAFNIIKEKTNKEPIEVFNKAIENIKPHLELKVRRIGGANYQVP 87

>HC2X_CHLTR (Q46397) Histone H1-like protein HC2 (HC2 nucleoprotein)|
          Length = 221

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 43  RTIISQKPIAGNLRVKKSPTAKENI-ITTTFQLVQQKIMDAQMPMLSKAAEMRQP 204
           +T+ ++KP+A     KK+P  K     T   + V +K + A+ P+  KA   + P
Sbjct: 88  KTVAARKPVAKKATAKKAPVRKVAAKKTVARKTVAKKTVAARKPVAKKATAKKAP 142



 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 43  RTIISQKPIAGNLRVKKSPTAKENI-ITTTFQLVQQKIMDAQMPMLSKAAEMRQP 204
           +T+ ++KP+A     KK+P  K     T   + V +K + A+ P+  KA   + P
Sbjct: 52  KTVAARKPVAKKATAKKAPVRKAVAKKTVARKTVAKKTVAARKPVAKKATAKKAP 106

>CFTR_MOUSE (P26361) Cystic fibrosis transmembrane conductance regulator (CFTR)|
           (cAMP-dependent chloride channel) (ATP-binding cassette
           transporter sub-family C member 7)
          Length = 1476

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 6   QMNSQCIICSFVEDNHFT-EAYCWEPKGQKISNSQRE 113
           ++N + +I S + DN ++ +AYCWE   +K+  + RE
Sbjct: 254 KINERLVITSEIIDNIYSVKAYCWESAMEKMIENLRE 290

>HC2D_CHLTR (Q06280) Histone-like protein HC2|
          Length = 201

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 43  RTIISQKPIAGNLRVKKSPTAKENI-ITTTFQLVQQKIMDAQMPMLSKAAEMRQP 204
           +T+ ++KP+A     KK+P  K     T   + V +K + A+ P+  KA   + P
Sbjct: 52  KTVAARKPVAKKATAKKAPVRKVAAKKTVARKTVAKKTVAARKPVAKKATAKKAP 106

>VIT1_CHICK (P87498) Vitellogenin-1 precursor (Vitellogenin I) (Minor|
            vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I)
            (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II)
            (LVII); YGP42]
          Length = 1912

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 96   SNSQREHYYNNVSACSTKNHGRPNAHAI*SS*NETAASTPKKP 224
            S+S+R H  ++ S+ S+  HG   AH+   S    AAS   +P
Sbjct: 1381 SSSRRSHMSDSSSSSSSHRHGEKAAHSSRRSPTSRAASAHHRP 1423

>HC2B_CHLTR (Q06281) Histone H1-like protein HC2 (HC2 nucleoprotein)|
          Length = 165

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 43  RTIISQKPIAGNLRVKKSPTAKENI-ITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRK 219
           +T+ ++KP+A     KK+P  K     T   + V +K + A+ P+  + A  ++  V  K
Sbjct: 52  KTVAARKPVAKKATAKKAPVRKVAAKKTVARKTVAKKTVAARKPVAKRVASTKKSSVAVK 111

Query: 220 S 222
           +
Sbjct: 112 A 112

>RS7_NEIG1 (Q5F5S2) 30S ribosomal protein S7|
          Length = 156

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 79  LRVKKSPTAKENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVP 255
           L +    +  E I+    + +++K   A + + ++A    +P V  KS    GAN QVP
Sbjct: 30  LMIDGKKSVAERIVYGALEQIEKKTGKAAIEVFNEAIANSKPIVEVKSRRVGGANYQVP 88

>DIP2_DROME (Q9W0S9) Disco-interacting protein 2|
          Length = 1773

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 75  EPKGQKISNSQREHYYNNVSACSTKNHGRPN 167
           +P+G K+ ++    YYN  +A ++ NHG  N
Sbjct: 46  KPEGDKVKSTPPPPYYNVKNANNSTNHGNIN 76

>SETD8_BOVIN (Q2YDJ8) Histone-lysine N-methyltransferase, H4 lysine-20 specific|
           (EC 2.1.1.43) (Histone H4-K20 methyltransferase)
           (H4-K20-HMTase) (SET domain containing lysine
           methyltransferase 8) (SET domain-containing protein 8)
          Length = 352

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 28  SVALWRTIISQKPIAGNLRVKKSPTAKENIITTTFQLVQQKIMDAQ----MPMLSKAAEM 195
           SVA +      KP+AG  R +       N I ++ +  +QKI DA+     P  ++ +E 
Sbjct: 75  SVAQYEVKCQGKPLAGIYRKRDEKRNSGNAIRSSMKAEEQKIKDARRGPLAPFPNQKSEA 134

Query: 196 RQP 204
            +P
Sbjct: 135 AEP 137

>RS7_MYCGE (P47334) 30S ribosomal protein S7|
          Length = 155

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +1

Query: 109 ENIITTTFQLVQQKIMDAQMPMLSKAAEMRQPQVHRKSLSA*GANLQVPT 258
           + I+   F++++++     + +  KA +   P++  K     G+N QVPT
Sbjct: 39  QRILYGAFEIIEKRTNQQPLTVFEKAVDNVMPRLELKVRRIAGSNYQVPT 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,732,850
Number of Sequences: 219361
Number of extensions: 619913
Number of successful extensions: 1750
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)