ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet59d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1NU3M_LOXAF (Q2I3F4) NADH-ubiquinone oxidoreductase chain 3 (EC 1... 28 5.0
2NU3M_MAMPR (Q38PR5) NADH-ubiquinone oxidoreductase chain 3 (EC 1... 28 6.5
3NU3M_ELEMA (Q2I3G7) NADH-ubiquinone oxidoreductase chain 3 (EC 1... 28 6.5 
>NU3M_LOXAF (Q2I3F4) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 3)
          Length = 115

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 93  IQAQLRTLTIISKLMLIILLYVNVTYERIDVPGLE 197
           IQA   +LT++   MLIILL + + YE +   GLE
Sbjct: 79  IQANNTSLTLLMSFMLIILLAIGLAYEWLQ-KGLE 112
to top
>NU3M_MAMPR (Q38PR5) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 3)
          Length = 115

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 93  IQAQLRTLTIISKLMLIILLYVNVTYERIDVPGLE 197
           IQA    LT++   MLIILL + + YE +   GLE
Sbjct: 79  IQANNTNLTLLMSFMLIILLAIGLAYEWLQ-KGLE 112
to top
>NU3M_ELEMA (Q2I3G7) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 3)
          Length = 115

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 93  IQAQLRTLTIISKLMLIILLYVNVTYERIDVPGLE 197
           IQA    LT++   MLIILL + + YE +   GLE
Sbjct: 79  IQANNTNLTLLMSFMLIILLAIGLAYEWLQ-KGLE 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,351,820
Number of Sequences: 219361
Number of extensions: 381435
Number of successful extensions: 888
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top