| Clone Name | rbaet59d11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY612193.1| Hordeum vulgare beta-1,3-glucanase 2a mRNA, complete cds Length = 1249 Score = 412 bits (208), Expect = e-112 Identities = 211/212 (99%) Strand = Plus / Minus Query: 9 taatttgtctccattaaatagtttgagcttcttcaccatccatgcaaagcatgatgttcg 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1240 taatttgtctccattaaatagtttgagcttcttcaccatccatgcaaagcatgatgttcg 1181 Query: 69 cattctacagtatagagacaacttattcaagcccagttgaggacattaactataataagc 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1180 cattctacagtatagagacaacttattcaagcccagttgaggacattaactataataagc 1121 Query: 129 aagctaatgttgattatcttgctatatgtaaatgtaacgtatgaacgtatcgatgtgccc 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1120 aagctaatgttgattatcttgctatatgtaaatgtaacgtatgaacgtatcgatgtgccc 1061 Query: 189 ggtctagaaactgatggggtacgccggcgatt 220 ||||||||||||||||||||| |||||||||| Sbjct: 1060 ggtctagaaactgatggggtaggccggcgatt 1029
>gb|AF112967.1| Triticum aestivum beta-1,3-glucanase precursor (Glb3) mRNA, complete cds Length = 1439 Score = 65.9 bits (33), Expect = 5e-08 Identities = 36/37 (97%) Strand = Plus / Minus Query: 44 ccatccatgcaaagcatgatgttcgcattctacagta 80 ||||||||||||||||||||| ||||||||||||||| Sbjct: 1225 ccatccatgcaaagcatgatgctcgcattctacagta 1189 Score = 56.0 bits (28), Expect = 5e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 193 tagaaactgatggggtacgccggcgatt 220 |||||||||||||||||||||||||||| Sbjct: 1079 tagaaactgatggggtacgccggcgatt 1052
>gb|S82315.1| PRm 6b=1,3-beta-glucanase {clone CHEM 9} [Zea mays=maize, cv. INRA 258, mercuric chloride-treated, leaves, mRNA Partial, 1243 nt] Length = 1243 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1054 agaaattgatggggtacgccggcgatt 1028
>gb|AY111675.1| Zea mays CL1243_1 mRNA sequence Length = 1272 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1075 agaaattgatggggtacgccggcgatt 1049
>gb|DQ147119.1| Zea diploperennis isolate d8 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1178 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1134 agaaattgatggggtacgccggcgatt 1108
>gb|DQ147118.1| Zea diploperennis isolate d7 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1137 agaaattgatggggtacgccggcgatt 1111
>gb|DQ147116.1| Zea diploperennis isolate d5 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1137 agaaattgatggggtacgccggcgatt 1111
>gb|DQ147115.1| Zea diploperennis isolate d4 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1137 agaaattgatggggtacgccggcgatt 1111
>gb|DQ147114.1| Zea diploperennis isolate d3 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1137 agaaattgatggggtacgccggcgatt 1111
>gb|DQ147113.1| Zea diploperennis isolate d2 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1189 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1145 agaaattgatggggtacgccggcgatt 1119
>gb|DQ147112.1| Zea diploperennis isolate d1 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1137 agaaattgatggggtacgccggcgatt 1111
>gb|DQ147111.1| Zea mays subsp. parviglumis isolate p15 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1182 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1138 agaaattgatggggtacgccggcgatt 1112
>gb|DQ147110.1| Zea mays subsp. parviglumis isolate p14 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1137 agaaattgatggggtacgccggcgatt 1111
>gb|DQ147109.1| Zea mays subsp. parviglumis isolate p13 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1181 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1137 agaaattgatggggtacgccggcgatt 1111
>gb|DQ147108.1| Zea mays subsp. parviglumis isolate p12 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1141 agaaattgatggggtacgccggcgatt 1115
>gb|DQ147107.1| Zea mays subsp. parviglumis isolate p11 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1186 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1142 agaaattgatggggtacgccggcgatt 1116
>gb|DQ147105.1| Zea mays subsp. parviglumis isolate p9 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1141 agaaattgatggggtacgccggcgatt 1115
>gb|DQ147104.1| Zea mays subsp. parviglumis isolate p8 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1182 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1138 agaaattgatggggtacgccggcgatt 1112
>gb|DQ147103.1| Zea mays subsp. parviglumis isolate p6 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1182 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1138 agaaattgatggggtacgccggcgatt 1112
>gb|DQ147102.1| Zea mays subsp. parviglumis isolate p5 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1141 agaaattgatggggtacgccggcgatt 1115
>gb|DQ147101.1| Zea mays subsp. parviglumis isolate p4 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1141 agaaattgatggggtacgccggcgatt 1115
>gb|DQ147099.1| Zea mays subsp. parviglumis isolate p2 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1182 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1138 agaaattgatggggtacgccggcgatt 1112
>gb|DQ147098.1| Zea mays subsp. parviglumis isolate p1 pathogenesis-related protein 6 (pr6) gene, complete cds Length = 1185 Score = 46.1 bits (23), Expect = 0.045 Identities = 26/27 (96%) Strand = Plus / Minus Query: 194 agaaactgatggggtacgccggcgatt 220 ||||| ||||||||||||||||||||| Sbjct: 1141 agaaattgatggggtacgccggcgatt 1115
>emb|AL669937.11| Mouse DNA sequence from clone DN-358O3 on chromosome 3 Contains the Trim45 gene for tripartite motif-containing 45, the Ttf2 gene for transcription termination factor RNA polymerase II, the ortholog of human immunoglobulin superfamily member 2 IGSF2 (Gm1016 genemodel 1016 (NCBI)) and the 3' end of the Ptgfrn gene for prostaglandin F2 receptor negative regulator, complete sequence Length = 163674 Score = 42.1 bits (21), Expect = 0.71 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 agtttgagcttcttcaccatc 48 ||||||||||||||||||||| Sbjct: 66340 agtttgagcttcttcaccatc 66320
>gb|AC087350.3| Homo sapiens chromosome 8, clone RP11-367C15, complete sequence Length = 193364 Score = 42.1 bits (21), Expect = 0.71 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 attaaatagtttgagcttctt 41 ||||||||||||||||||||| Sbjct: 67647 attaaatagtttgagcttctt 67667
>gb|AC104391.5| Homo sapiens chromosome 8, clone CTD-3071K10, complete sequence Length = 148386 Score = 42.1 bits (21), Expect = 0.71 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 attaaatagtttgagcttctt 41 ||||||||||||||||||||| Sbjct: 104400 attaaatagtttgagcttctt 104420
>emb|AL669872.8| Mouse DNA sequence from clone RP23-357D5 on chromosome 3, complete sequence Length = 199673 Score = 42.1 bits (21), Expect = 0.71 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 agtttgagcttcttcaccatc 48 ||||||||||||||||||||| Sbjct: 121003 agtttgagcttcttcaccatc 120983
>dbj|AP004074.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1266F9, complete sequence Length = 156441 Score = 42.1 bits (21), Expect = 0.71 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 attaaatagtttgagcttctt 41 ||||||||||||||||||||| Sbjct: 52798 attaaatagtttgagcttctt 52778
>gb|AC118681.6| Mus musculus chromosome 16, clone RP23-473M11, complete sequence Length = 279112 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 attctacagtatagagacaa 89 |||||||||||||||||||| Sbjct: 3348 attctacagtatagagacaa 3367
>gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, complete sequence Length = 243771 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 attctacagtatagagacaa 89 |||||||||||||||||||| Sbjct: 56282 attctacagtatagagacaa 56263
>gb|AC005547.1|AC005547 Homo sapiens chromosome 19, cosmid R29228, complete sequence Length = 46127 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 ttgctatatgtaaatgtaacgtat 170 ||||||||| |||||||||||||| Sbjct: 43748 ttgctatatataaatgtaacgtat 43771
>gb|AC122293.3| Mus musculus BAC clone RP23-257O9 from 10, complete sequence Length = 209942 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tttgagcttcttcaccatcc 49 |||||||||||||||||||| Sbjct: 62928 tttgagcttcttcaccatcc 62909
>dbj|AP006689.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT27F14, TM0387, complete sequence Length = 96031 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cttgctatatgtaaatgtaa 165 |||||||||||||||||||| Sbjct: 33535 cttgctatatgtaaatgtaa 33554 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,849,497 Number of Sequences: 3902068 Number of extensions: 1849497 Number of successful extensions: 128299 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128251 Number of HSP's gapped (non-prelim): 48 length of query: 220 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 198 effective length of database: 17,147,199,772 effective search space: 3395145554856 effective search space used: 3395145554856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)